Wall clock time and date at job start Mon Mar 30 2020 05:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47007 * 2 1 4 4 C 1.52997 * 109.47314 * 239.99883 * 2 1 3 5 5 O 1.45201 * 109.47346 * 120.00147 * 2 1 3 6 6 C 1.34638 * 116.99819 * 59.99666 * 5 2 1 7 7 O 1.21513 * 120.00208 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99834 * 179.72501 * 6 5 2 9 9 C 1.46931 * 120.63086 * 0.02562 * 8 6 5 10 10 C 1.53624 * 108.54401 * 126.36316 * 9 8 6 11 11 C 1.53046 * 109.23994 * 54.85914 * 10 9 8 12 12 H 1.08996 * 109.46059 * 58.52520 * 11 10 9 13 13 C 1.50696 * 109.45755 * 178.49020 * 11 10 9 14 14 H 1.08006 * 120.00056 * 120.06719 * 13 11 10 15 15 C 1.37877 * 119.99866 * 300.06111 * 13 11 10 16 16 N 1.31512 * 120.00427 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99909 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47160 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47216 * 120.00197 * 17 15 13 20 20 H 1.48498 * 109.47128 * 240.00562 * 17 15 13 21 21 C 1.53046 * 109.53506 * 298.50814 * 11 10 9 22 22 H 1.08997 * 109.49431 * 301.41221 * 21 11 10 23 23 O 1.42897 * 109.49607 * 181.32088 * 21 11 10 24 24 C 1.46925 * 120.62933 * 180.27332 * 8 6 5 25 25 H 1.08997 * 109.47392 * 299.99655 * 1 2 3 26 26 H 1.08999 * 109.47056 * 59.99890 * 1 2 3 27 27 H 1.08999 * 109.47175 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47042 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47303 * 299.99959 * 3 2 1 30 30 H 1.09003 * 109.46990 * 60.00348 * 3 2 1 31 31 H 1.08999 * 109.47400 * 300.00352 * 4 2 1 32 32 H 1.09013 * 109.46945 * 59.99983 * 4 2 1 33 33 H 1.08997 * 109.47343 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.58052 * 246.19939 * 9 8 6 35 35 H 1.09004 * 109.58526 * 6.62070 * 9 8 6 36 36 H 1.08994 * 109.63475 * 294.86504 * 10 9 8 37 37 H 1.08997 * 109.45553 * 174.73780 * 10 9 8 38 38 H 0.96999 * 120.00130 * 179.97438 * 16 15 13 39 39 H 0.96701 * 114.00314 * 180.16430 * 23 21 11 40 40 H 1.08993 * 109.58778 * 353.38141 * 24 8 6 41 41 H 1.09005 * 109.58031 * 113.65781 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5035 8 7 2.0722 -2.6672 2.4140 9 6 2.9248 -2.0330 3.4288 10 6 2.2694 -2.2223 4.8052 11 6 2.0142 -3.7127 5.0416 12 1 2.9573 -4.2562 4.9840 13 6 1.4052 -3.9075 6.4062 14 1 0.4310 -4.3639 6.5026 15 6 2.0916 -3.5032 7.5315 16 7 3.2775 -2.9471 7.4141 17 14 1.3369 -3.7453 9.2231 18 1 0.0058 -4.3888 9.0838 19 1 2.2225 -4.6128 10.0407 20 1 1.1826 -2.4272 9.8895 21 6 1.0541 -4.2432 3.9743 22 1 0.1198 -3.6834 4.0150 23 8 0.7923 -5.6274 4.2138 24 6 1.6907 -4.0749 2.5915 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1393 33 1 3.1300 -0.7209 -1.2494 34 1 3.9095 -2.5003 3.4224 35 1 3.0215 -0.9692 3.2117 36 1 1.3236 -1.6816 4.8380 37 1 2.9342 -1.8398 5.5796 38 1 3.7602 -2.6624 8.2058 39 1 0.1917 -6.0309 3.5724 40 1 0.9729 -4.3588 1.8220 41 1 2.5763 -4.7058 2.5156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258368469.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:23 Heat of formation + Delta-G solvation = -136.679203 kcal Electronic energy + Delta-G solvation = -22358.806816 eV Core-core repulsion = 19045.720230 eV Total energy + Delta-G solvation = -3313.086586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.60685 -38.41258 -36.54062 -35.18028 -33.89569 -33.29357 -30.63912 -29.28834 -27.42395 -27.37001 -26.32905 -23.46457 -22.27205 -21.53982 -19.70329 -18.76899 -17.55382 -16.55377 -16.42360 -16.21085 -15.83670 -15.06667 -14.57973 -14.37616 -14.21913 -13.50353 -13.43448 -13.21472 -12.80957 -12.53400 -12.36019 -12.12843 -11.93878 -11.87658 -11.77967 -11.42416 -11.33213 -11.24184 -11.04718 -10.91926 -10.55207 -10.30154 -10.25983 -9.97218 -9.69402 -9.52666 -9.19080 -8.98877 -8.36109 -8.09140 -5.99910 -4.03084 2.43179 3.13464 3.31256 3.39340 3.44771 4.12568 4.45494 4.72839 4.76662 4.90811 5.08824 5.33813 5.36826 5.42259 5.50359 5.62166 5.65157 5.65897 5.73626 5.80667 5.85417 5.92738 5.95217 6.05401 6.24939 6.28995 6.34237 6.40814 6.52557 6.63107 6.85773 7.01751 7.14470 7.64168 7.79720 7.81413 8.01864 8.34691 8.48976 8.65096 8.99423 9.60416 11.06652 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.028186 B = 0.004915 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.168644 B = 5695.294762 C = 6201.622779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.134 3.866 3 C -0.140 4.140 4 C -0.182 4.182 5 O -0.360 6.360 6 C 0.651 3.349 7 O -0.585 6.585 8 N -0.582 5.582 9 C 0.105 3.895 10 C -0.123 4.123 11 C 0.055 3.945 12 H 0.035 0.965 13 C -0.495 4.495 14 H 0.059 0.941 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.285 1.285 21 C 0.100 3.900 22 H 0.046 0.954 23 O -0.545 6.545 24 C 0.097 3.903 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.113 0.887 38 H 0.260 0.740 39 H 0.356 0.644 40 H 0.083 0.917 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.707 6.211 -14.023 15.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.097 3.903 3 C -0.197 4.197 4 C -0.239 4.239 5 O -0.275 6.275 6 C 0.406 3.594 7 O -0.476 6.476 8 N -0.322 5.322 9 C -0.016 4.016 10 C -0.161 4.161 11 C 0.037 3.963 12 H 0.053 0.947 13 C -0.533 4.533 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.536 5.536 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.212 1.212 21 C 0.040 3.960 22 H 0.064 0.936 23 O -0.347 6.347 24 C -0.025 4.025 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.131 0.869 38 H 0.069 0.931 39 H 0.200 0.800 40 H 0.101 0.899 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.371 6.288 -13.676 15.114 hybrid contribution -0.707 -0.135 0.407 0.827 sum -2.078 6.153 -13.268 14.772 Atomic orbital electron populations 1.22506 0.94226 1.05079 1.02174 1.21990 0.94290 0.91502 0.82491 1.21843 1.02188 0.92774 1.02912 1.22505 1.01425 1.03567 0.96406 1.86326 1.71466 1.23907 1.45795 1.17971 0.78848 0.80388 0.82173 1.90822 1.42462 1.70577 1.43750 1.47045 1.52042 1.11802 1.21318 1.22177 0.93218 0.97172 0.89054 1.22133 1.00607 0.99681 0.93687 1.18688 0.94217 0.91279 0.92153 0.94651 1.21115 1.03847 1.38241 0.90138 0.92268 1.24948 0.94895 0.95307 0.99106 1.69830 1.12720 1.41979 1.29105 0.86512 0.79393 0.77657 0.84301 1.19835 1.21090 1.21174 1.22409 0.98431 0.81880 0.93252 0.93645 1.86779 1.68975 1.24196 1.54717 1.22481 1.00921 0.79393 0.99720 0.92165 0.91525 0.89347 0.91543 0.90454 0.91425 0.89357 0.91509 0.92327 0.91689 0.90352 0.93901 0.86888 0.93059 0.80044 0.89871 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 8.37 37.16 0.31 -1.97 16 2 C 0.13 1.72 1.13 -90.62 -0.10 1.62 16 3 C -0.14 -1.37 8.85 37.16 0.33 -1.04 16 4 C -0.18 -2.19 8.37 37.16 0.31 -1.87 16 5 O -0.36 -5.82 8.53 -40.32 -0.34 -6.16 16 6 C 0.65 11.72 7.74 54.06 0.42 12.14 16 7 O -0.58 -10.98 11.29 -19.28 -0.22 -11.20 16 8 N -0.58 -10.69 2.97 -178.31 -0.53 -11.22 16 9 C 0.11 1.96 6.47 -3.48 -0.02 1.94 16 10 C -0.12 -2.72 5.17 -26.38 -0.14 -2.86 16 11 C 0.06 1.34 1.82 -91.73 -0.17 1.17 16 12 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 13 C -0.50 -13.53 8.21 -34.44 -0.28 -13.81 16 14 H 0.06 1.66 7.66 -52.48 -0.40 1.26 16 15 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 16 N -0.90 -24.85 11.30 55.43 0.63 -24.22 16 17 Si 0.89 21.35 29.54 -169.99 -5.02 16.32 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 21 C 0.10 2.07 3.02 -26.63 -0.08 1.99 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 O -0.55 -10.94 12.85 -35.23 -0.45 -11.39 16 24 C 0.10 1.75 6.05 -3.73 -0.02 1.73 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 1.33 5.88 -51.93 -0.31 1.02 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.28 5.88 -51.93 -0.31 0.97 16 32 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.35 6.93 -51.93 -0.36 0.99 16 36 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.11 2.78 6.03 -51.93 -0.31 2.46 16 38 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.36 5.12 9.08 45.56 0.41 5.54 16 40 H 0.08 1.42 7.00 -51.93 -0.36 1.05 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 322.78 15.07 4.86 4.86 Total: -1.00 -30.25 322.78 -6.46 -36.70 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.84 Total: 5.82 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 0.46 Total: 0.49 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.10 Total: -35.44 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -1.01 Total: -28.76 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.25 -6.46 -36.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258368469.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.978 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds