Wall clock time and date at job start Mon Mar 30 2020 05:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47007 * 2 1 4 4 C 1.52997 * 109.47314 * 239.99883 * 2 1 3 5 5 O 1.45201 * 109.47346 * 120.00147 * 2 1 3 6 6 C 1.34638 * 116.99819 * 59.99666 * 5 2 1 7 7 O 1.21513 * 120.00208 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99834 * 179.72501 * 6 5 2 9 9 C 1.46931 * 120.63086 * 0.02562 * 8 6 5 10 10 C 1.53624 * 108.54401 * 126.36316 * 9 8 6 11 11 C 1.53046 * 109.23994 * 54.85914 * 10 9 8 12 12 H 1.08996 * 109.46059 * 58.52520 * 11 10 9 13 13 C 1.50696 * 109.45755 * 178.49020 * 11 10 9 14 14 H 1.08006 * 120.00056 * 120.06719 * 13 11 10 15 15 C 1.37877 * 119.99866 * 300.06111 * 13 11 10 16 16 N 1.31512 * 120.00427 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99909 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47160 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47216 * 120.00197 * 17 15 13 20 20 H 1.48498 * 109.47128 * 240.00562 * 17 15 13 21 21 C 1.53046 * 109.53506 * 298.50814 * 11 10 9 22 22 H 1.08997 * 109.49431 * 301.41221 * 21 11 10 23 23 O 1.42897 * 109.49607 * 181.32088 * 21 11 10 24 24 C 1.46925 * 120.62933 * 180.27332 * 8 6 5 25 25 H 1.08997 * 109.47392 * 299.99655 * 1 2 3 26 26 H 1.08999 * 109.47056 * 59.99890 * 1 2 3 27 27 H 1.08999 * 109.47175 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47042 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47303 * 299.99959 * 3 2 1 30 30 H 1.09003 * 109.46990 * 60.00348 * 3 2 1 31 31 H 1.08999 * 109.47400 * 300.00352 * 4 2 1 32 32 H 1.09013 * 109.46945 * 59.99983 * 4 2 1 33 33 H 1.08997 * 109.47343 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.58052 * 246.19939 * 9 8 6 35 35 H 1.09004 * 109.58526 * 6.62070 * 9 8 6 36 36 H 1.08994 * 109.63475 * 294.86504 * 10 9 8 37 37 H 1.08997 * 109.45553 * 174.73780 * 10 9 8 38 38 H 0.96999 * 120.00130 * 179.97438 * 16 15 13 39 39 H 0.96701 * 114.00314 * 180.16430 * 23 21 11 40 40 H 1.08993 * 109.58778 * 353.38141 * 24 8 6 41 41 H 1.09005 * 109.58031 * 113.65781 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5035 8 7 2.0722 -2.6672 2.4140 9 6 2.9248 -2.0330 3.4288 10 6 2.2694 -2.2223 4.8052 11 6 2.0142 -3.7127 5.0416 12 1 2.9573 -4.2562 4.9840 13 6 1.4052 -3.9075 6.4062 14 1 0.4310 -4.3639 6.5026 15 6 2.0916 -3.5032 7.5315 16 7 3.2775 -2.9471 7.4141 17 14 1.3369 -3.7453 9.2231 18 1 0.0058 -4.3888 9.0838 19 1 2.2225 -4.6128 10.0407 20 1 1.1826 -2.4272 9.8895 21 6 1.0541 -4.2432 3.9743 22 1 0.1198 -3.6834 4.0150 23 8 0.7923 -5.6274 4.2138 24 6 1.6907 -4.0749 2.5915 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1393 33 1 3.1300 -0.7209 -1.2494 34 1 3.9095 -2.5003 3.4224 35 1 3.0215 -0.9692 3.2117 36 1 1.3236 -1.6816 4.8380 37 1 2.9342 -1.8398 5.5796 38 1 3.7602 -2.6624 8.2058 39 1 0.1917 -6.0309 3.5724 40 1 0.9729 -4.3588 1.8220 41 1 2.5763 -4.7058 2.5156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258368469.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:22 Heat of formation + Delta-G solvation = -157.164276 kcal Electronic energy + Delta-G solvation = -22359.695116 eV Core-core repulsion = 19045.720230 eV Total energy + Delta-G solvation = -3313.974886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.92809 -39.90163 -37.90951 -36.72417 -35.40327 -34.80132 -32.48806 -30.86663 -28.32171 -28.25244 -28.14402 -25.19087 -23.90871 -22.93543 -21.20326 -20.16352 -19.03279 -18.39564 -17.91635 -17.68549 -17.16787 -16.65222 -16.21633 -15.66040 -15.39898 -15.17524 -14.91519 -14.46496 -14.33589 -13.98497 -13.60557 -13.30213 -13.16733 -13.06219 -12.90210 -12.83231 -12.82797 -12.79285 -12.49178 -12.43002 -12.26803 -12.12977 -11.74975 -11.35443 -11.18427 -11.07262 -11.01432 -10.84351 -10.40445 -9.65945 -8.07476 -6.18039 1.14664 1.40652 1.43358 1.54355 1.74477 2.45593 2.82630 3.18026 3.64006 3.79576 3.84472 3.90278 3.99381 4.07929 4.28119 4.34932 4.41821 4.55392 4.62732 4.65341 4.73860 4.80261 4.81821 4.86970 4.90272 4.91446 5.12006 5.14567 5.24958 5.32510 5.37319 5.42461 5.49806 5.64998 5.89916 6.02139 6.34225 6.38281 6.87363 7.07787 7.27253 7.48471 8.97109 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.028186 B = 0.004915 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.168644 B = 5695.294762 C = 6201.622779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.119 3.881 3 C -0.135 4.135 4 C -0.177 4.177 5 O -0.367 6.367 6 C 0.652 3.348 7 O -0.593 6.593 8 N -0.588 5.588 9 C 0.119 3.881 10 C -0.111 4.111 11 C 0.051 3.949 12 H 0.005 0.995 13 C -0.518 4.518 14 H 0.045 0.955 15 C 0.015 3.985 16 N -0.915 5.915 17 Si 0.950 3.050 18 H -0.274 1.274 19 H -0.281 1.281 20 H -0.277 1.277 21 C 0.110 3.890 22 H 0.037 0.963 23 O -0.564 6.564 24 C 0.108 3.892 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.033 0.967 37 H 0.088 0.912 38 H 0.262 0.738 39 H 0.381 0.619 40 H 0.097 0.903 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.971 7.266 -15.278 17.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.083 3.917 3 C -0.192 4.192 4 C -0.234 4.234 5 O -0.282 6.282 6 C 0.407 3.593 7 O -0.485 6.485 8 N -0.329 5.329 9 C -0.003 4.003 10 C -0.150 4.150 11 C 0.033 3.967 12 H 0.023 0.977 13 C -0.556 4.556 14 H 0.063 0.937 15 C -0.184 4.184 16 N -0.555 5.555 17 Si 0.777 3.223 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.203 1.203 21 C 0.050 3.950 22 H 0.055 0.945 23 O -0.369 6.369 24 C -0.014 4.014 25 H 0.075 0.925 26 H 0.114 0.886 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.125 0.875 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.052 0.948 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.229 0.771 40 H 0.115 0.885 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.647 7.347 -14.959 16.747 hybrid contribution -0.661 -0.464 0.749 1.101 sum -2.308 6.883 -14.210 15.957 Atomic orbital electron populations 1.22470 0.94108 1.03592 1.03476 1.22489 0.94645 0.92879 0.81652 1.21881 1.02438 0.90579 1.04277 1.22454 1.01573 1.02177 0.97207 1.86336 1.71510 1.22794 1.47542 1.18010 0.78498 0.80979 0.81770 1.90827 1.42716 1.71039 1.43962 1.47032 1.52282 1.11963 1.21588 1.21959 0.92887 0.98359 0.87051 1.21873 0.99784 0.98022 0.95337 1.18641 0.93422 0.92347 0.92300 0.97683 1.21369 1.03552 1.38556 0.92110 0.93692 1.25622 0.95376 0.95115 1.02256 1.69937 1.13432 1.42198 1.29955 0.85621 0.78490 0.77795 0.80413 1.19911 1.20740 1.20314 1.22101 0.97238 0.82087 0.93562 0.94540 1.86701 1.70018 1.23807 1.56353 1.22319 1.01267 0.79634 0.98206 0.92509 0.88607 0.92110 0.91203 0.87536 0.91604 0.92048 0.88700 0.92032 0.91253 0.88637 0.94827 0.89349 0.92887 0.77085 0.88467 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.14 8.37 71.98 0.60 -3.54 16 2 C 0.12 2.80 1.13 -10.80 -0.01 2.79 16 3 C -0.13 -2.22 8.85 71.98 0.64 -1.59 16 4 C -0.18 -3.85 8.37 71.98 0.60 -3.25 16 5 O -0.37 -11.33 8.53 -55.48 -0.47 -11.80 16 6 C 0.65 22.79 7.74 129.79 1.00 23.79 16 7 O -0.59 -21.77 11.29 19.80 0.22 -21.55 16 8 N -0.59 -21.18 2.97 -948.47 -2.81 -23.99 16 9 C 0.12 4.39 6.47 86.51 0.56 4.95 16 10 C -0.11 -5.04 5.17 30.82 0.16 -4.88 16 11 C 0.05 2.55 1.82 -11.51 -0.02 2.53 16 12 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 13 C -0.52 -28.90 8.21 25.60 0.21 -28.69 16 14 H 0.04 2.57 7.66 -2.91 -0.02 2.55 16 15 C 0.01 0.80 5.30 84.65 0.45 1.25 16 16 N -0.92 -51.46 11.30 21.45 0.24 -51.21 16 17 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 18 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 C 0.11 4.56 3.02 30.66 0.09 4.66 16 22 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 23 O -0.56 -22.50 12.85 -148.98 -1.91 -24.41 16 24 C 0.11 3.82 6.05 86.35 0.52 4.34 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16 27 H 0.06 1.76 5.88 -2.39 -0.01 1.75 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.69 5.88 -2.39 -0.01 1.68 16 32 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 34 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.10 3.18 6.93 -2.38 -0.02 3.17 16 36 H 0.03 1.53 8.14 -2.39 -0.02 1.52 16 37 H 0.09 4.45 6.03 -2.39 -0.01 4.44 16 38 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 39 H 0.38 10.58 9.08 -74.06 -0.67 9.90 16 40 H 0.10 3.18 7.00 -2.39 -0.02 3.17 16 41 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 Total: -1.00 -65.47 322.78 2.44 -63.03 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.35 Total: 21.46 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 4.81 Total: 2.36 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -2.57 Total: -75.21 kcal Atomic # 8 Polarization: -55.59 SS G_CDS: -2.16 Total: -57.76 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -65.47 2.44 -63.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258368469.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.137 kcal (2) G-P(sol) polarization free energy of solvation -65.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds