Wall clock time and date at job start Mon Mar 30 2020 05:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09011 * 109.99489 * 2 1 4 4 N 1.47021 * 109.88430 * 238.90405 * 2 1 3 5 5 C 1.34775 * 125.64920 * 59.48637 * 4 2 1 6 6 O 1.21505 * 120.00119 * 359.72438 * 5 4 2 7 7 O 1.34638 * 119.99861 * 180.02562 * 5 4 2 8 8 C 1.45192 * 117.00084 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47079 * 60.00038 * 8 7 5 10 10 C 1.53005 * 109.47375 * 179.97438 * 8 7 5 11 11 C 1.52999 * 109.47272 * 300.00166 * 8 7 5 12 12 C 1.47433 * 108.69939 * 239.74768 * 4 2 1 13 13 C 1.54683 * 104.94156 * 23.80993 * 12 4 2 14 14 C 1.54323 * 109.88473 * 121.09276 * 2 1 3 15 15 O 1.42901 * 110.72147 * 215.77403 * 14 2 1 16 16 C 1.50697 * 110.71737 * 338.86317 * 14 2 1 17 17 H 1.08003 * 120.00150 * 95.30444 * 16 14 2 18 18 C 1.37875 * 120.00408 * 275.30075 * 16 14 2 19 19 N 1.31519 * 119.99679 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00316 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47213 * 89.99938 * 20 18 16 22 22 H 1.48498 * 109.46830 * 209.99734 * 20 18 16 23 23 H 1.48494 * 109.47239 * 329.99918 * 20 18 16 24 24 H 1.09001 * 109.46748 * 186.92394 * 1 2 3 25 25 H 1.08993 * 109.47704 * 306.92956 * 1 2 3 26 26 H 1.09000 * 109.46991 * 66.93431 * 1 2 3 27 27 H 1.08993 * 109.47414 * 59.99827 * 9 8 7 28 28 H 1.09007 * 109.47147 * 180.02562 * 9 8 7 29 29 H 1.09002 * 109.47259 * 299.99774 * 9 8 7 30 30 H 1.08997 * 109.46867 * 60.00115 * 10 8 7 31 31 H 1.08997 * 109.47140 * 180.02562 * 10 8 7 32 32 H 1.09001 * 109.46676 * 299.99664 * 10 8 7 33 33 H 1.08994 * 109.47111 * 59.99826 * 11 8 7 34 34 H 1.09007 * 109.47295 * 179.97438 * 11 8 7 35 35 H 1.09003 * 109.46663 * 299.99762 * 11 8 7 36 36 H 1.08991 * 110.36257 * 142.74268 * 12 4 2 37 37 H 1.09005 * 110.36123 * 265.05830 * 12 4 2 38 38 H 1.08996 * 111.10267 * 205.10976 * 13 12 4 39 39 H 1.08998 * 110.85166 * 81.33153 * 13 12 4 40 40 H 0.96697 * 114.00314 * 180.02562 * 15 14 2 41 41 H 0.97008 * 119.99569 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 7 2.0300 -0.7141 -1.1839 5 6 1.7743 -0.3853 -2.4657 6 8 1.0712 0.5729 -2.7184 7 8 2.2928 -1.1223 -3.4660 8 6 1.9751 -0.7103 -4.8215 9 6 2.4835 0.7140 -5.0540 10 6 2.6485 -1.6600 -5.8143 11 6 0.4592 -0.7502 -5.0246 12 6 2.8524 -1.8530 -0.7366 13 6 2.3519 -2.1694 0.6925 14 6 2.0549 -0.7494 1.2427 15 8 3.2466 -0.1354 1.7375 16 6 0.9999 -0.8040 2.3174 17 1 0.3603 -1.6701 2.4029 18 6 0.8510 0.2517 3.1917 19 7 1.6302 1.3061 3.0880 20 14 -0.4563 0.1837 4.5243 21 1 0.1177 -0.4273 5.7501 22 1 -0.9240 1.5596 4.8295 23 1 -1.6017 -0.6353 4.0528 24 1 -0.3633 -1.0202 0.1239 25 1 -0.3634 0.6174 0.8214 26 1 -0.3633 0.4026 -0.9455 27 1 3.5634 0.7425 -4.9093 28 1 2.2446 1.0235 -6.0715 29 1 2.0041 1.3909 -4.3467 30 1 2.2867 -2.6748 -5.6488 31 1 2.4103 -1.3504 -6.8319 32 1 3.7284 -1.6310 -5.6695 33 1 -0.0201 -0.0734 -4.3174 34 1 0.2207 -0.4404 -6.0422 35 1 0.0971 -1.7649 -4.8590 36 1 2.6999 -2.7111 -1.3911 37 1 3.9060 -1.5744 -0.7141 38 1 3.1271 -2.6616 1.2797 39 1 1.4454 -2.7738 0.6611 40 1 3.6174 -0.5689 2.5183 41 1 1.5257 2.0487 3.7034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259926341.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:11 Heat of formation + Delta-G solvation = -124.926984 kcal Electronic energy + Delta-G solvation = -22761.184393 eV Core-core repulsion = 19448.607422 eV Total energy + Delta-G solvation = -3312.576972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.34950 -38.48946 -36.24150 -34.37839 -33.62860 -32.27127 -30.17692 -29.87531 -27.33805 -27.25231 -25.71200 -23.89797 -22.88148 -21.13622 -19.27677 -18.73674 -17.30160 -16.72129 -16.17917 -15.81910 -14.81589 -14.67188 -14.57662 -14.29409 -14.05386 -13.56423 -13.06865 -12.91652 -12.42719 -12.33437 -12.07282 -11.79494 -11.75996 -11.72172 -11.69108 -11.35291 -11.09918 -11.02094 -10.95289 -10.84592 -10.69209 -10.41447 -10.27801 -10.07413 -9.97512 -9.47427 -8.90874 -8.67316 -8.22107 -7.97193 -6.03594 -4.23313 2.64126 3.23553 3.32601 3.34697 3.42200 4.31602 4.43273 4.83735 4.86572 5.01789 5.13471 5.44412 5.49554 5.54952 5.59159 5.68420 5.73611 5.80761 5.86709 5.96528 5.96992 6.02122 6.21376 6.42547 6.42966 6.46200 6.55695 6.64809 6.69883 6.77588 6.85467 7.09152 7.28840 7.40053 7.47170 7.75721 8.04842 8.24684 8.70699 8.94284 9.29722 9.51543 10.94201 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.034029 B = 0.005213 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.637879 B = 5369.656459 C = 5623.565406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.171 3.829 3 H 0.072 0.928 4 N -0.593 5.593 5 C 0.661 3.339 6 O -0.575 6.575 7 O -0.368 6.368 8 C 0.135 3.865 9 C -0.182 4.182 10 C -0.138 4.138 11 C -0.182 4.182 12 C 0.108 3.892 13 C -0.160 4.160 14 C 0.256 3.744 15 O -0.541 6.541 16 C -0.555 4.555 17 H 0.063 0.937 18 C 0.080 3.920 19 N -0.845 5.845 20 Si 0.884 3.116 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 H 0.046 0.954 25 H 0.072 0.928 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.358 0.642 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.991 -5.875 -11.856 13.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.071 3.929 3 H 0.090 0.910 4 N -0.333 5.333 5 C 0.416 3.584 6 O -0.465 6.465 7 O -0.284 6.284 8 C 0.098 3.902 9 C -0.240 4.240 10 C -0.196 4.196 11 C -0.239 4.239 12 C -0.015 4.015 13 C -0.198 4.198 14 C 0.215 3.785 15 O -0.343 6.343 16 C -0.593 4.593 17 H 0.081 0.919 18 C -0.127 4.127 19 N -0.479 5.479 20 Si 0.711 3.289 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 H 0.065 0.935 25 H 0.091 0.909 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.203 0.797 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.707 -4.950 -12.524 13.574 hybrid contribution -0.607 -0.365 1.126 1.330 sum 1.100 -5.315 -11.398 12.624 Atomic orbital electron populations 1.21765 0.94390 1.01519 1.00556 1.21787 0.94318 0.96184 0.80646 0.90985 1.47716 1.51768 1.31634 1.02210 1.17590 0.79077 0.80965 0.80803 1.90828 1.42404 1.30386 1.82905 1.86295 1.70953 1.55724 1.15392 1.21929 0.95486 0.94978 0.77816 1.22506 1.01671 0.96601 1.03186 1.21830 1.01226 0.99268 0.97238 1.22506 0.94881 1.03289 1.03252 1.22194 0.94714 0.88039 0.96521 1.23492 1.00785 1.01489 0.94068 1.19475 0.84824 0.84630 0.89604 1.86383 1.41711 1.58793 1.47462 1.21296 1.19199 1.04051 1.14716 0.91930 1.25043 0.95422 0.95140 0.97130 1.70174 1.36126 1.05814 1.35748 0.86736 0.82361 0.77496 0.82295 1.20546 1.21107 1.19711 0.93535 0.90873 0.93888 0.92393 0.91635 0.89173 0.91689 0.90543 0.91670 0.89125 0.91658 0.92430 0.91935 0.91988 0.90976 0.91132 0.79688 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 8.18 37.16 0.30 -2.55 16 2 C 0.17 4.04 3.20 -66.96 -0.21 3.83 16 3 H 0.07 1.95 8.07 -51.92 -0.42 1.53 16 4 N -0.59 -12.51 3.08 -168.89 -0.52 -13.03 16 5 C 0.66 13.54 7.70 54.05 0.42 13.96 16 6 O -0.57 -12.62 10.68 -19.28 -0.21 -12.82 16 7 O -0.37 -6.48 9.42 -40.32 -0.38 -6.86 16 8 C 0.14 1.90 1.13 -90.62 -0.10 1.80 16 9 C -0.18 -2.52 8.37 37.16 0.31 -2.21 16 10 C -0.14 -1.45 8.85 37.16 0.33 -1.12 16 11 C -0.18 -2.48 8.37 37.16 0.31 -2.17 16 12 C 0.11 1.99 6.91 -2.65 -0.02 1.97 16 13 C -0.16 -3.07 6.24 -24.71 -0.15 -3.23 16 14 C 0.26 5.93 0.85 -89.94 -0.08 5.86 16 15 O -0.54 -13.09 11.32 -35.23 -0.40 -13.49 16 16 C -0.55 -13.80 6.09 -34.44 -0.21 -14.01 16 17 H 0.06 1.55 7.73 -52.48 -0.41 1.15 16 18 C 0.08 2.05 4.91 -17.82 -0.09 1.96 16 19 N -0.84 -22.93 11.94 55.43 0.66 -22.27 16 20 Si 0.88 19.98 29.54 -169.99 -5.02 14.96 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 24 H 0.05 1.03 7.83 -51.93 -0.41 0.62 16 25 H 0.07 1.78 7.09 -51.93 -0.37 1.41 16 26 H 0.04 0.97 6.53 -51.93 -0.34 0.63 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 29 H 0.09 1.52 5.89 -51.93 -0.31 1.22 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.51 5.87 -51.93 -0.30 1.20 16 34 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.02 8.04 -51.93 -0.42 0.61 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.34 7.98 -51.93 -0.41 0.93 16 40 H 0.36 7.86 9.07 45.56 0.41 8.27 16 41 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 323.77 15.07 4.88 4.88 Total: -1.00 -28.67 323.77 -6.08 -34.75 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -5.91 Total: 9.79 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 0.81 Total: 4.09 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.14 Total: -35.30 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.98 Total: -33.17 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.67 -6.08 -34.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259926341.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.178 kcal (2) G-P(sol) polarization free energy of solvation -28.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds