Wall clock time and date at job start Mon Mar 30 2020 05:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09011 * 109.99489 * 2 1 4 4 N 1.47021 * 109.88430 * 238.90405 * 2 1 3 5 5 C 1.34775 * 125.64920 * 59.48637 * 4 2 1 6 6 O 1.21505 * 120.00119 * 359.72438 * 5 4 2 7 7 O 1.34638 * 119.99861 * 180.02562 * 5 4 2 8 8 C 1.45192 * 117.00084 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47079 * 60.00038 * 8 7 5 10 10 C 1.53005 * 109.47375 * 179.97438 * 8 7 5 11 11 C 1.52999 * 109.47272 * 300.00166 * 8 7 5 12 12 C 1.47433 * 108.69939 * 239.74768 * 4 2 1 13 13 C 1.54683 * 104.94156 * 23.80993 * 12 4 2 14 14 C 1.54323 * 109.88473 * 121.09276 * 2 1 3 15 15 O 1.42901 * 110.72147 * 215.77403 * 14 2 1 16 16 C 1.50697 * 110.71737 * 338.86317 * 14 2 1 17 17 H 1.08003 * 120.00150 * 95.30444 * 16 14 2 18 18 C 1.37875 * 120.00408 * 275.30075 * 16 14 2 19 19 N 1.31519 * 119.99679 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00316 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47213 * 89.99938 * 20 18 16 22 22 H 1.48498 * 109.46830 * 209.99734 * 20 18 16 23 23 H 1.48494 * 109.47239 * 329.99918 * 20 18 16 24 24 H 1.09001 * 109.46748 * 186.92394 * 1 2 3 25 25 H 1.08993 * 109.47704 * 306.92956 * 1 2 3 26 26 H 1.09000 * 109.46991 * 66.93431 * 1 2 3 27 27 H 1.08993 * 109.47414 * 59.99827 * 9 8 7 28 28 H 1.09007 * 109.47147 * 180.02562 * 9 8 7 29 29 H 1.09002 * 109.47259 * 299.99774 * 9 8 7 30 30 H 1.08997 * 109.46867 * 60.00115 * 10 8 7 31 31 H 1.08997 * 109.47140 * 180.02562 * 10 8 7 32 32 H 1.09001 * 109.46676 * 299.99664 * 10 8 7 33 33 H 1.08994 * 109.47111 * 59.99826 * 11 8 7 34 34 H 1.09007 * 109.47295 * 179.97438 * 11 8 7 35 35 H 1.09003 * 109.46663 * 299.99762 * 11 8 7 36 36 H 1.08991 * 110.36257 * 142.74268 * 12 4 2 37 37 H 1.09005 * 110.36123 * 265.05830 * 12 4 2 38 38 H 1.08996 * 111.10267 * 205.10976 * 13 12 4 39 39 H 1.08998 * 110.85166 * 81.33153 * 13 12 4 40 40 H 0.96697 * 114.00314 * 180.02562 * 15 14 2 41 41 H 0.97008 * 119.99569 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 7 2.0300 -0.7141 -1.1839 5 6 1.7743 -0.3853 -2.4657 6 8 1.0712 0.5729 -2.7184 7 8 2.2928 -1.1223 -3.4660 8 6 1.9751 -0.7103 -4.8215 9 6 2.4835 0.7140 -5.0540 10 6 2.6485 -1.6600 -5.8143 11 6 0.4592 -0.7502 -5.0246 12 6 2.8524 -1.8530 -0.7366 13 6 2.3519 -2.1694 0.6925 14 6 2.0549 -0.7494 1.2427 15 8 3.2466 -0.1354 1.7375 16 6 0.9999 -0.8040 2.3174 17 1 0.3603 -1.6701 2.4029 18 6 0.8510 0.2517 3.1917 19 7 1.6302 1.3061 3.0880 20 14 -0.4563 0.1837 4.5243 21 1 0.1177 -0.4273 5.7501 22 1 -0.9240 1.5596 4.8295 23 1 -1.6017 -0.6353 4.0528 24 1 -0.3633 -1.0202 0.1239 25 1 -0.3634 0.6174 0.8214 26 1 -0.3633 0.4026 -0.9455 27 1 3.5634 0.7425 -4.9093 28 1 2.2446 1.0235 -6.0715 29 1 2.0041 1.3909 -4.3467 30 1 2.2867 -2.6748 -5.6488 31 1 2.4103 -1.3504 -6.8319 32 1 3.7284 -1.6310 -5.6695 33 1 -0.0201 -0.0734 -4.3174 34 1 0.2207 -0.4404 -6.0422 35 1 0.0971 -1.7649 -4.8590 36 1 2.6999 -2.7111 -1.3911 37 1 3.9060 -1.5744 -0.7141 38 1 3.1271 -2.6616 1.2797 39 1 1.4454 -2.7738 0.6611 40 1 3.6174 -0.5689 2.5183 41 1 1.5257 2.0487 3.7034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259926341.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:10 Heat of formation + Delta-G solvation = -144.160354 kcal Electronic energy + Delta-G solvation = -22762.018415 eV Core-core repulsion = 19448.607422 eV Total energy + Delta-G solvation = -3313.410993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.84472 -40.09373 -37.75537 -36.10956 -34.91436 -34.21658 -31.97735 -31.52295 -28.33969 -28.25419 -27.60056 -25.69850 -24.46666 -22.57632 -20.90518 -20.28800 -18.92978 -18.56657 -17.51025 -17.32376 -16.65456 -16.28484 -16.14184 -15.89853 -15.38867 -14.88890 -14.71428 -14.39255 -14.06551 -13.51648 -13.41105 -13.28701 -13.17133 -12.98419 -12.85659 -12.82746 -12.82675 -12.65147 -12.52161 -12.40862 -12.20156 -12.16063 -11.99977 -11.79112 -11.34303 -11.01947 -10.75494 -10.62420 -10.06428 -9.64858 -7.99959 -6.24291 1.17497 1.44075 1.48099 1.55077 1.83332 2.44274 3.01930 3.18905 3.76242 3.80554 3.83813 3.91805 3.98528 4.27111 4.34403 4.54838 4.60468 4.61806 4.63497 4.74484 4.78208 4.83590 4.85780 4.89320 4.90692 4.93399 5.14237 5.24563 5.27638 5.31842 5.38614 5.45991 5.49067 5.54366 5.63133 5.76590 6.13962 6.63952 6.75972 7.36673 7.40003 7.64637 8.97320 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.034029 B = 0.005213 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.637879 B = 5369.656459 C = 5623.565406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.177 3.823 3 H 0.025 0.975 4 N -0.602 5.602 5 C 0.659 3.341 6 O -0.596 6.596 7 O -0.366 6.366 8 C 0.119 3.881 9 C -0.179 4.179 10 C -0.131 4.131 11 C -0.178 4.178 12 C 0.111 3.889 13 C -0.148 4.148 14 C 0.244 3.756 15 O -0.556 6.556 16 C -0.555 4.555 17 H 0.064 0.936 18 C 0.039 3.961 19 N -0.879 5.879 20 Si 0.940 3.060 21 H -0.272 1.272 22 H -0.293 1.293 23 H -0.268 1.268 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.365 0.635 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.134 -7.974 -13.311 15.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.075 3.925 3 H 0.043 0.957 4 N -0.342 5.342 5 C 0.414 3.586 6 O -0.488 6.488 7 O -0.281 6.281 8 C 0.083 3.917 9 C -0.237 4.237 10 C -0.188 4.188 11 C -0.235 4.235 12 C -0.011 4.011 13 C -0.186 4.186 14 C 0.203 3.797 15 O -0.361 6.361 16 C -0.593 4.593 17 H 0.082 0.918 18 C -0.165 4.165 19 N -0.515 5.515 20 Si 0.766 3.234 21 H -0.198 1.198 22 H -0.219 1.219 23 H -0.193 1.193 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.211 0.789 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.860 -7.086 -13.997 15.799 hybrid contribution -0.645 0.309 1.467 1.632 sum 1.215 -6.778 -12.530 14.297 Atomic orbital electron populations 1.21582 0.94262 1.01424 0.99438 1.21486 0.94331 0.94189 0.82486 0.95698 1.47680 1.52295 1.32216 1.02029 1.17692 0.78818 0.80860 0.81186 1.90829 1.43254 1.31338 1.83382 1.86307 1.70433 1.55086 1.16293 1.22483 0.96356 0.96189 0.76648 1.22469 1.01319 0.95884 1.03994 1.21858 1.01040 0.98562 0.97299 1.22458 0.94309 1.02702 1.04055 1.22318 0.94405 0.87928 0.96435 1.23380 1.01835 0.98858 0.94511 1.19575 0.84282 0.86891 0.88978 1.86362 1.42011 1.59756 1.47938 1.21561 1.19286 1.03694 1.14784 0.91763 1.25647 0.96918 0.94872 0.99032 1.70306 1.37938 1.06494 1.36718 0.85857 0.80337 0.76967 0.80275 1.19787 1.21873 1.19251 0.92610 0.92907 0.94289 0.92241 0.88516 0.92854 0.91061 0.87560 0.91299 0.92668 0.88635 0.91938 0.89169 0.91574 0.88669 0.90647 0.78900 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.11 8.18 71.98 0.59 -4.52 16 2 C 0.18 8.55 3.20 45.34 0.15 8.69 16 3 H 0.02 1.42 8.07 -2.38 -0.02 1.40 16 4 N -0.60 -25.27 3.08 -918.66 -2.83 -28.10 16 5 C 0.66 27.01 7.70 129.79 1.00 28.01 16 6 O -0.60 -26.89 10.68 19.83 0.21 -26.68 16 7 O -0.37 -12.37 9.42 -55.47 -0.52 -12.89 16 8 C 0.12 3.12 1.13 -10.79 -0.01 3.11 16 9 C -0.18 -4.72 8.37 71.98 0.60 -4.12 16 10 C -0.13 -2.25 8.85 71.98 0.64 -1.61 16 11 C -0.18 -4.54 8.37 71.98 0.60 -3.94 16 12 C 0.11 3.86 6.91 86.77 0.60 4.46 16 13 C -0.15 -5.38 6.24 31.91 0.20 -5.18 16 14 C 0.24 11.28 0.85 -10.35 -0.01 11.27 16 15 O -0.56 -27.23 11.32 -148.98 -1.69 -28.92 16 16 C -0.56 -27.47 6.09 25.60 0.16 -27.31 16 17 H 0.06 3.11 7.73 -2.91 -0.02 3.09 16 18 C 0.04 2.02 4.91 84.65 0.42 2.44 16 19 N -0.88 -48.81 11.94 21.45 0.26 -48.55 16 20 Si 0.94 41.11 29.54 68.60 2.03 43.14 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 H 0.05 2.46 7.83 -2.39 -0.02 2.44 16 25 H 0.05 2.65 7.09 -2.39 -0.02 2.63 16 26 H 0.04 1.81 6.53 -2.39 -0.02 1.80 16 27 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.10 1.88 8.14 -2.38 -0.02 1.87 16 29 H 0.05 1.82 5.89 -2.39 -0.01 1.80 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.83 5.87 -2.39 -0.01 1.81 16 34 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 2.66 8.04 -2.39 -0.02 2.64 16 37 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 39 H 0.07 2.68 7.98 -2.39 -0.02 2.66 16 40 H 0.37 16.07 9.07 -74.06 -0.67 15.40 16 41 H 0.26 13.82 8.31 -92.70 -0.77 13.05 16 Total: -1.00 -63.27 323.77 2.72 -60.55 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.34 Total: 30.17 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 4.93 Total: 11.28 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -2.58 Total: -76.65 kcal Atomic # 8 Polarization: -66.49 SS G_CDS: -2.00 Total: -68.49 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -63.27 2.72 -60.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259926341.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.609 kcal (2) G-P(sol) polarization free energy of solvation -63.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds