Wall clock time and date at job start Mon Mar 30 2020 05:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47241 * 2 1 4 4 H 1.09006 * 109.86511 * 58.38087 * 3 2 1 5 5 O 1.43744 * 109.88142 * 297.37767 * 3 2 1 6 6 C 1.44378 * 106.97648 * 214.05945 * 5 3 2 7 7 C 1.55003 * 103.48837 * 40.05703 * 6 5 3 8 8 C 1.54193 * 109.87627 * 179.53006 * 3 2 1 9 9 H 1.09004 * 110.50325 * 240.11305 * 8 3 2 10 10 C 1.50699 * 110.51859 * 2.79050 * 8 3 2 11 11 O 1.21295 * 119.99570 * 85.62398 * 10 8 3 12 12 N 1.34773 * 120.00049 * 265.62556 * 10 8 3 13 13 C 1.37095 * 120.00139 * 4.78245 * 12 10 8 14 14 H 1.08006 * 119.99552 * 314.42473 * 13 12 10 15 15 C 1.38954 * 120.00344 * 134.42389 * 13 12 10 16 16 N 1.31412 * 119.99870 * 4.03376 * 15 13 12 17 17 Si 1.86794 * 120.00070 * 184.03396 * 15 13 12 18 18 H 1.48507 * 109.47266 * 59.99835 * 17 15 13 19 19 H 1.48502 * 109.47075 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47357 * 299.99955 * 17 15 13 21 21 C 1.46499 * 119.99774 * 184.77858 * 12 10 8 22 22 C 1.53000 * 109.47233 * 90.00518 * 21 12 10 23 23 O 1.42895 * 109.47141 * 64.99296 * 22 21 12 24 24 C 1.42900 * 113.99883 * 179.97438 * 23 22 21 25 25 H 1.09004 * 109.47008 * 59.99524 * 1 2 3 26 26 H 1.09000 * 109.47079 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47007 * 300.00053 * 1 2 3 28 28 H 1.08999 * 109.47120 * 240.00469 * 2 1 3 29 29 H 1.08998 * 109.47174 * 120.00054 * 2 1 3 30 30 H 1.08996 * 110.61824 * 281.56434 * 6 5 3 31 31 H 1.08998 * 110.62028 * 158.55778 * 6 5 3 32 32 H 1.09007 * 110.90326 * 81.17794 * 7 6 5 33 33 H 1.08995 * 110.90686 * 204.74225 * 7 6 5 34 34 H 0.96993 * 119.99795 * 185.00616 * 16 15 13 35 35 H 1.09009 * 109.46974 * 210.00351 * 21 12 10 36 36 H 1.09002 * 109.47462 * 329.99765 * 21 12 10 37 37 H 1.08992 * 109.46992 * 185.00041 * 22 21 12 38 38 H 1.09000 * 109.46632 * 304.99467 * 22 21 12 39 39 H 1.09002 * 109.46746 * 60.00359 * 24 23 22 40 40 H 1.08997 * 109.47366 * 180.02562 * 24 23 22 41 41 H 1.09003 * 109.47329 * 300.00637 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6568 1.9709 0.8730 5 8 1.6169 2.1106 -1.2004 6 6 2.6676 3.0323 -1.5625 7 6 3.9644 2.2360 -1.2679 8 6 3.5819 1.4534 0.0119 9 1 3.9532 1.9673 0.8986 10 6 4.1205 0.0473 -0.0488 11 8 4.2701 -0.4990 -1.1214 12 7 4.4359 -0.6032 1.0886 13 6 4.1757 -0.0246 2.3039 14 1 4.4293 1.0114 2.4741 15 6 3.5857 -0.7709 3.3167 16 7 3.3496 -2.0511 3.1373 17 14 3.1280 0.0456 4.9332 18 1 2.1542 1.1374 4.6781 19 1 2.5189 -0.9598 5.8406 20 1 4.3477 0.6084 5.5663 21 6 5.0568 -1.9286 1.0263 22 6 6.5790 -1.7778 0.9928 23 8 7.0283 -1.2072 2.2234 24 6 8.4436 -1.0234 2.2963 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.6201 3.9299 -0.9462 31 1 2.6062 3.2879 -2.6203 32 1 4.1965 1.5541 -2.0861 33 1 4.7996 2.9098 -1.0768 34 1 2.8727 -2.5559 3.8144 35 1 4.7683 -2.5067 1.9043 36 1 4.7228 -2.4444 0.1260 37 1 7.0382 -2.7569 0.8571 38 1 6.8613 -1.1263 0.1657 39 1 8.7650 -0.3565 1.4963 40 1 8.7041 -0.5868 3.2604 41 1 8.9412 -1.9871 2.1879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316555325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:10 Heat of formation + Delta-G solvation = -125.269671 kcal Electronic energy + Delta-G solvation = -23014.816476 eV Core-core repulsion = 19702.224645 eV Total energy + Delta-G solvation = -3312.591832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.81154 -37.86404 -36.77597 -34.66443 -32.87202 -31.60059 -31.51621 -29.22171 -27.62192 -25.78804 -24.67216 -23.41540 -22.40472 -20.95853 -20.45342 -18.82420 -16.72015 -16.42179 -15.79383 -15.33693 -15.30538 -15.14920 -14.77666 -14.35276 -14.26868 -13.86168 -13.35238 -12.89641 -12.79447 -12.66892 -12.06084 -11.86124 -11.56101 -11.40416 -11.21699 -11.05755 -11.00481 -10.92375 -10.73403 -10.63179 -10.40661 -10.22375 -10.08797 -9.98402 -9.87919 -9.23773 -8.97108 -8.91441 -8.37443 -7.39636 -6.22256 -4.08687 3.18681 3.25021 3.25892 3.83633 4.16107 4.39682 4.55469 4.75434 5.02798 5.20152 5.41740 5.51047 5.58637 5.68775 5.73762 5.79133 5.90510 5.95459 6.00602 6.04655 6.06550 6.10495 6.20729 6.24022 6.34232 6.42221 6.46171 6.54464 6.68141 6.71850 6.84425 6.92294 7.18288 7.36450 7.47368 7.65667 7.89954 8.12738 8.44888 9.15362 9.53412 9.95570 10.75387 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.008780 C = 0.006800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.537664 B = 3188.130300 C = 4116.678395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.132 4.132 3 C 0.105 3.895 4 H 0.068 0.932 5 O -0.376 6.376 6 C 0.049 3.951 7 C -0.145 4.145 8 C -0.124 4.124 9 H 0.098 0.902 10 C 0.493 3.507 11 O -0.603 6.603 12 N -0.432 5.432 13 C -0.316 4.316 14 H 0.081 0.919 15 C 0.054 3.946 16 N -0.873 5.873 17 Si 0.912 3.088 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.274 1.274 21 C 0.097 3.903 22 C 0.055 3.945 23 O -0.360 6.360 24 C 0.031 3.969 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.269 0.731 35 H 0.137 0.863 36 H 0.066 0.934 37 H 0.036 0.964 38 H 0.032 0.968 39 H 0.029 0.971 40 H 0.076 0.924 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.882 4.972 -2.079 5.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.170 4.170 3 C 0.047 3.953 4 H 0.086 0.914 5 O -0.296 6.296 6 C -0.028 4.028 7 C -0.183 4.183 8 C -0.146 4.146 9 H 0.116 0.884 10 C 0.282 3.718 11 O -0.489 6.489 12 N -0.150 5.150 13 C -0.444 4.444 14 H 0.099 0.901 15 C -0.151 4.151 16 N -0.511 5.511 17 Si 0.739 3.261 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.026 4.026 22 C -0.023 4.023 23 O -0.278 6.278 24 C -0.067 4.067 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.154 0.846 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.095 0.905 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.611 4.497 -2.381 5.337 hybrid contribution 0.438 0.399 0.914 1.089 sum 2.049 4.896 -1.467 5.506 Atomic orbital electron populations 1.21650 0.96450 1.00695 1.01012 1.21894 0.95531 0.94726 1.04814 1.22500 0.91592 0.94186 0.86999 0.91444 1.88833 1.41405 1.55347 1.43991 1.23443 0.86744 0.92427 1.00150 1.23136 0.97618 0.98859 0.98691 1.22510 0.96466 0.96374 0.99237 0.88368 1.19984 0.79703 0.87838 0.84308 1.90508 1.59489 1.69241 1.29689 1.43287 1.51422 1.15673 1.04588 1.19187 1.39354 0.96782 0.89115 0.90098 1.25355 0.95425 0.95088 0.99200 1.69463 1.39115 1.06428 1.36090 0.86236 0.78947 0.78975 0.81967 1.19838 1.20963 1.19892 1.21882 0.87335 0.88151 1.05224 1.23031 0.98141 0.95300 0.85800 1.88177 1.19436 1.83297 1.36870 1.22635 0.84035 0.98822 1.01192 0.92972 0.93406 0.93469 0.90997 0.88159 0.92846 0.89666 0.89048 0.91059 0.91993 0.84611 0.91600 0.94545 0.94940 0.95226 0.90517 0.95278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.79 37.16 0.36 -2.16 16 2 C -0.13 -2.78 4.50 -26.73 -0.12 -2.90 16 3 C 0.11 2.07 3.45 -26.10 -0.09 1.98 16 4 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 5 O -0.38 -7.09 10.65 -35.23 -0.38 -7.46 16 6 C 0.05 0.76 7.72 38.22 0.29 1.05 16 7 C -0.15 -2.51 6.65 -24.72 -0.16 -2.68 16 8 C -0.12 -2.51 2.80 -90.19 -0.25 -2.76 16 9 H 0.10 1.93 6.42 -51.93 -0.33 1.60 16 10 C 0.49 11.61 4.59 -10.99 -0.05 11.56 16 11 O -0.60 -15.48 14.51 5.54 0.08 -15.40 16 12 N -0.43 -10.49 2.19 -114.81 -0.25 -10.74 16 13 C -0.32 -7.74 7.39 -14.93 -0.11 -7.85 16 14 H 0.08 1.94 6.59 -52.48 -0.35 1.60 16 15 C 0.05 1.31 5.40 -17.47 -0.09 1.22 16 16 N -0.87 -22.25 10.73 55.50 0.60 -21.66 16 17 Si 0.91 19.46 29.56 -169.99 -5.02 14.43 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 C 0.10 2.31 5.48 -4.04 -0.02 2.29 16 22 C 0.06 1.16 6.28 37.16 0.23 1.39 16 23 O -0.36 -7.74 10.18 -35.23 -0.36 -8.10 16 24 C 0.03 0.49 11.01 101.05 1.11 1.61 16 25 H 0.05 0.90 7.77 -51.93 -0.40 0.49 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.66 6.92 -51.93 -0.36 1.30 16 29 H 0.10 2.38 6.72 -51.93 -0.35 2.03 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.76 6.91 -51.93 -0.36 1.41 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.27 6.61 8.32 -40.82 -0.34 6.27 16 35 H 0.14 3.48 5.16 -51.92 -0.27 3.21 16 36 H 0.07 1.59 7.36 -51.93 -0.38 1.20 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 325.91 15.07 4.91 4.91 Total: -1.00 -28.21 325.91 -5.91 -34.12 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.59 Total: 7.13 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 1.10 Total: 2.76 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.34 Total: -32.40 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.65 Total: -30.96 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.21 -5.91 -34.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316555325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.149 kcal (2) G-P(sol) polarization free energy of solvation -28.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds