Wall clock time and date at job start Mon Mar 30 2020 05:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47241 * 2 1 4 4 H 1.09006 * 109.86511 * 58.38087 * 3 2 1 5 5 O 1.43744 * 109.88142 * 297.37767 * 3 2 1 6 6 C 1.44378 * 106.97648 * 214.05945 * 5 3 2 7 7 C 1.55003 * 103.48837 * 40.05703 * 6 5 3 8 8 C 1.54193 * 109.87627 * 179.53006 * 3 2 1 9 9 H 1.09004 * 110.50325 * 240.11305 * 8 3 2 10 10 C 1.50699 * 110.51859 * 2.79050 * 8 3 2 11 11 O 1.21295 * 119.99570 * 85.62398 * 10 8 3 12 12 N 1.34773 * 120.00049 * 265.62556 * 10 8 3 13 13 C 1.37095 * 120.00139 * 4.78245 * 12 10 8 14 14 H 1.08006 * 119.99552 * 314.42473 * 13 12 10 15 15 C 1.38954 * 120.00344 * 134.42389 * 13 12 10 16 16 N 1.31412 * 119.99870 * 4.03376 * 15 13 12 17 17 Si 1.86794 * 120.00070 * 184.03396 * 15 13 12 18 18 H 1.48507 * 109.47266 * 59.99835 * 17 15 13 19 19 H 1.48502 * 109.47075 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47357 * 299.99955 * 17 15 13 21 21 C 1.46499 * 119.99774 * 184.77858 * 12 10 8 22 22 C 1.53000 * 109.47233 * 90.00518 * 21 12 10 23 23 O 1.42895 * 109.47141 * 64.99296 * 22 21 12 24 24 C 1.42900 * 113.99883 * 179.97438 * 23 22 21 25 25 H 1.09004 * 109.47008 * 59.99524 * 1 2 3 26 26 H 1.09000 * 109.47079 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47007 * 300.00053 * 1 2 3 28 28 H 1.08999 * 109.47120 * 240.00469 * 2 1 3 29 29 H 1.08998 * 109.47174 * 120.00054 * 2 1 3 30 30 H 1.08996 * 110.61824 * 281.56434 * 6 5 3 31 31 H 1.08998 * 110.62028 * 158.55778 * 6 5 3 32 32 H 1.09007 * 110.90326 * 81.17794 * 7 6 5 33 33 H 1.08995 * 110.90686 * 204.74225 * 7 6 5 34 34 H 0.96993 * 119.99795 * 185.00616 * 16 15 13 35 35 H 1.09009 * 109.46974 * 210.00351 * 21 12 10 36 36 H 1.09002 * 109.47462 * 329.99765 * 21 12 10 37 37 H 1.08992 * 109.46992 * 185.00041 * 22 21 12 38 38 H 1.09000 * 109.46632 * 304.99467 * 22 21 12 39 39 H 1.09002 * 109.46746 * 60.00359 * 24 23 22 40 40 H 1.08997 * 109.47366 * 180.02562 * 24 23 22 41 41 H 1.09003 * 109.47329 * 300.00637 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6568 1.9709 0.8730 5 8 1.6169 2.1106 -1.2004 6 6 2.6676 3.0323 -1.5625 7 6 3.9644 2.2360 -1.2679 8 6 3.5819 1.4534 0.0119 9 1 3.9532 1.9673 0.8986 10 6 4.1205 0.0473 -0.0488 11 8 4.2701 -0.4990 -1.1214 12 7 4.4359 -0.6032 1.0886 13 6 4.1757 -0.0246 2.3039 14 1 4.4293 1.0114 2.4741 15 6 3.5857 -0.7709 3.3167 16 7 3.3496 -2.0511 3.1373 17 14 3.1280 0.0456 4.9332 18 1 2.1542 1.1374 4.6781 19 1 2.5189 -0.9598 5.8406 20 1 4.3477 0.6084 5.5663 21 6 5.0568 -1.9286 1.0263 22 6 6.5790 -1.7778 0.9928 23 8 7.0283 -1.2072 2.2234 24 6 8.4436 -1.0234 2.2963 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.6201 3.9299 -0.9462 31 1 2.6062 3.2879 -2.6203 32 1 4.1965 1.5541 -2.0861 33 1 4.7996 2.9098 -1.0768 34 1 2.8727 -2.5559 3.8144 35 1 4.7683 -2.5067 1.9043 36 1 4.7228 -2.4444 0.1260 37 1 7.0382 -2.7569 0.8571 38 1 6.8613 -1.1263 0.1657 39 1 8.7650 -0.3565 1.4963 40 1 8.7041 -0.5868 3.2604 41 1 8.9412 -1.9871 2.1879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316555325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:09 Heat of formation + Delta-G solvation = -142.813252 kcal Electronic energy + Delta-G solvation = -23015.577223 eV Core-core repulsion = 19702.224645 eV Total energy + Delta-G solvation = -3313.352579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.45287 -39.50365 -38.39976 -36.53385 -34.41843 -33.40747 -33.12850 -30.89247 -29.07276 -27.26819 -26.49633 -24.96711 -23.96976 -22.44735 -22.15647 -20.64902 -18.46068 -18.11382 -17.33310 -17.03161 -16.89114 -16.62642 -16.40257 -16.01851 -15.87411 -15.50833 -14.99168 -14.51255 -14.36470 -14.15985 -13.59406 -13.45310 -13.27598 -13.04819 -12.86537 -12.67636 -12.57935 -12.41564 -12.33335 -12.25876 -12.07474 -11.78060 -11.74219 -11.64179 -11.43519 -10.89178 -10.62097 -10.50484 -10.19339 -9.29819 -8.09558 -6.01074 1.49736 1.52275 1.58655 2.04025 2.39403 2.91478 3.01436 3.09435 3.20444 3.72724 3.86840 4.11847 4.16948 4.26934 4.31044 4.37856 4.44610 4.51646 4.53956 4.55325 4.64426 4.66316 4.68488 4.79694 4.84551 4.85921 4.91056 4.97452 5.09144 5.20504 5.24960 5.31832 5.44637 5.51189 5.73294 6.03614 6.17629 6.45742 6.54109 7.25772 7.67264 8.09423 8.88085 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.008780 C = 0.006800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.537664 B = 3188.130300 C = 4116.678395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 C 0.110 3.890 4 H 0.081 0.919 5 O -0.390 6.390 6 C 0.050 3.950 7 C -0.141 4.141 8 C -0.127 4.127 9 H 0.104 0.896 10 C 0.486 3.514 11 O -0.633 6.633 12 N -0.439 5.439 13 C -0.322 4.322 14 H 0.086 0.914 15 C 0.015 3.985 16 N -0.899 5.899 17 Si 0.970 3.030 18 H -0.261 1.261 19 H -0.288 1.288 20 H -0.272 1.272 21 C 0.094 3.906 22 C 0.067 3.933 23 O -0.392 6.392 24 C 0.025 3.975 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.268 0.732 35 H 0.119 0.881 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.025 0.975 39 H 0.038 0.962 40 H 0.093 0.907 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.951 7.071 -1.477 7.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.164 4.164 3 C 0.052 3.948 4 H 0.099 0.901 5 O -0.309 6.309 6 C -0.026 4.026 7 C -0.179 4.179 8 C -0.149 4.149 9 H 0.122 0.878 10 C 0.276 3.724 11 O -0.522 6.522 12 N -0.156 5.156 13 C -0.450 4.450 14 H 0.104 0.896 15 C -0.186 4.186 16 N -0.538 5.538 17 Si 0.794 3.206 18 H -0.186 1.186 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.029 4.029 22 C -0.011 4.011 23 O -0.311 6.311 24 C -0.071 4.071 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.127 0.873 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.136 0.864 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.057 0.943 40 H 0.111 0.889 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.693 6.612 -1.781 7.054 hybrid contribution 0.491 -0.294 0.691 0.897 sum 2.184 6.318 -1.090 6.773 Atomic orbital electron populations 1.21587 0.94046 1.01335 1.02045 1.21718 0.97635 0.95394 1.01615 1.22409 0.91024 0.93379 0.88000 0.90105 1.88806 1.42522 1.56091 1.43522 1.23707 0.84332 0.92217 1.02315 1.23131 0.99828 0.98714 0.96239 1.22569 0.96980 0.94294 1.01026 0.87790 1.20561 0.79141 0.89149 0.83576 1.90477 1.60709 1.70351 1.30633 1.43452 1.51508 1.15668 1.05002 1.19373 1.39392 0.96987 0.89217 0.89614 1.26047 0.95261 0.95409 1.01892 1.69605 1.39683 1.07551 1.36914 0.85343 0.78760 0.78203 0.78254 1.18580 1.21342 1.19688 1.21779 0.89578 0.88152 1.03417 1.22793 0.96203 0.96382 0.85694 1.88103 1.22710 1.83569 1.36700 1.22874 0.81365 1.00366 1.02534 0.92104 0.93064 0.92101 0.94160 0.91312 0.89897 0.87258 0.91570 0.88405 0.92210 0.86399 0.93299 0.92202 0.95663 0.94290 0.88857 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 9.79 71.98 0.71 -3.95 16 2 C -0.13 -5.35 4.50 30.60 0.14 -5.22 16 3 C 0.11 4.20 3.45 31.00 0.11 4.31 16 4 H 0.08 2.88 8.14 -2.38 -0.02 2.86 16 5 O -0.39 -13.88 10.65 -148.98 -1.59 -15.46 16 6 C 0.05 1.39 7.72 72.67 0.56 1.95 16 7 C -0.14 -4.65 6.65 31.90 0.21 -4.44 16 8 C -0.13 -5.04 2.80 -10.52 -0.03 -5.07 16 9 H 0.10 3.95 6.42 -2.39 -0.02 3.93 16 10 C 0.49 23.36 4.59 87.66 0.40 23.77 16 11 O -0.63 -33.69 14.51 -3.08 -0.04 -33.74 16 12 N -0.44 -21.80 2.19 -635.52 -1.39 -23.19 16 13 C -0.32 -15.80 7.39 84.04 0.62 -15.18 16 14 H 0.09 4.05 6.59 -2.91 -0.02 4.03 16 15 C 0.02 0.76 5.40 84.93 0.46 1.21 16 16 N -0.90 -46.77 10.73 21.66 0.23 -46.54 16 17 Si 0.97 39.32 29.56 68.60 2.03 41.34 16 18 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 19 H -0.29 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 21 C 0.09 4.64 5.48 86.38 0.47 5.12 16 22 C 0.07 2.83 6.28 71.98 0.45 3.28 16 23 O -0.39 -16.66 10.18 -148.98 -1.52 -18.17 16 24 C 0.02 0.76 11.01 113.37 1.25 2.01 16 25 H 0.06 2.02 7.77 -2.38 -0.02 2.00 16 26 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.04 1.93 6.92 -2.39 -0.02 1.91 16 29 H 0.07 3.35 6.72 -2.39 -0.02 3.34 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 31 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.07 2.53 6.91 -2.38 -0.02 2.52 16 33 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.27 13.39 8.32 -92.71 -0.77 12.62 16 35 H 0.12 6.28 5.16 -2.38 -0.01 6.27 16 36 H 0.05 2.49 7.36 -2.39 -0.02 2.47 16 37 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -61.90 325.91 4.08 -57.82 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 1.00 Total: 30.14 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 5.35 Total: 7.80 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -1.16 Total: -69.74 kcal Atomic # 8 Polarization: -64.22 SS G_CDS: -3.15 Total: -67.37 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.34 kcal Total: -61.90 4.08 -57.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316555325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.994 kcal (2) G-P(sol) polarization free energy of solvation -61.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds