Wall clock time and date at job start Mon Mar 30 2020 05:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.45411 * 2 1 4 4 C 1.53033 * 109.46366 * 119.97853 * 2 1 3 5 5 H 1.09001 * 109.50388 * 59.25419 * 4 2 1 6 6 C 1.50695 * 109.50445 * 299.13531 * 4 2 1 7 7 O 1.20827 * 120.00008 * 0.19256 * 6 4 2 8 8 O 1.34225 * 120.00291 * 180.20114 * 6 4 2 9 9 C 1.53120 * 109.27975 * 179.19104 * 4 2 1 10 10 C 1.53113 * 109.16410 * 302.34684 * 9 4 2 11 11 C 1.53039 * 109.27666 * 57.65239 * 10 9 4 12 12 N 1.46845 * 109.52330 * 300.81811 * 11 10 9 13 13 C 1.46901 * 111.00127 * 185.83893 * 12 11 10 14 14 C 1.52998 * 109.47036 * 67.70735 * 13 12 11 15 15 O 1.42895 * 109.47241 * 64.99839 * 14 13 12 16 16 C 1.42901 * 113.99979 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47289 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99665 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00490 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00253 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99717 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47117 * 90.00082 * 21 19 17 23 23 H 1.48500 * 109.47279 * 209.99988 * 21 19 17 24 24 H 1.48506 * 109.47480 * 330.00462 * 21 19 17 25 25 H 1.08991 * 109.47059 * 171.97947 * 1 2 3 26 26 H 1.09000 * 109.46587 * 291.97436 * 1 2 3 27 27 H 1.09001 * 109.47008 * 51.97558 * 1 2 3 28 28 H 0.96698 * 117.00620 * 179.97438 * 8 6 4 29 29 H 1.09000 * 109.52719 * 182.44018 * 9 4 2 30 30 H 1.09006 * 109.52158 * 62.25489 * 9 4 2 31 31 H 1.09004 * 109.50755 * 297.71218 * 10 9 4 32 32 H 1.09004 * 109.50815 * 177.59070 * 10 9 4 33 33 H 1.09007 * 109.46448 * 180.81055 * 11 10 9 34 34 H 1.08997 * 109.45642 * 60.83189 * 11 10 9 35 35 H 1.09000 * 109.47421 * 307.70410 * 13 12 11 36 36 H 1.09004 * 109.47362 * 187.70536 * 13 12 11 37 37 H 1.09004 * 109.47100 * 304.99690 * 14 13 12 38 38 H 1.08999 * 109.47245 * 184.99927 * 14 13 12 39 39 H 1.09003 * 109.46816 * 299.99795 * 16 15 14 40 40 H 1.08997 * 109.47644 * 59.99894 * 16 15 14 41 41 H 0.96996 * 120.00008 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7210 1.2498 5 1 1.6660 -1.7448 1.2574 6 6 1.5555 0.0016 2.4803 7 8 0.8694 0.9900 2.3697 8 8 1.8864 -0.4526 3.6993 9 6 3.5710 -0.7362 1.2354 10 6 4.0548 -1.4188 -0.0469 11 6 3.4865 -0.6776 -1.2592 12 7 2.0193 -0.6917 -1.1995 13 6 1.4373 -0.1104 -2.4166 14 6 1.7260 -1.0263 -3.6076 15 8 1.0519 -2.2728 -3.4244 16 6 1.2572 -3.2063 -4.4867 17 6 0.5044 -4.4778 -4.1907 18 1 -0.0735 -4.5641 -3.2824 19 6 0.5523 -5.5304 -5.0799 20 7 -0.1051 -6.6398 -4.8218 21 14 1.5501 -5.3802 -6.6519 22 1 2.9370 -5.8500 -6.4047 23 1 0.9281 -6.2108 -7.7143 24 1 1.5785 -3.9605 -7.0866 25 1 -0.3633 -1.0175 -0.1434 26 1 -0.3632 0.3846 0.9530 27 1 -0.3633 0.6330 -0.8095 28 1 1.5525 0.0443 4.4586 29 1 3.9381 -1.2865 2.1018 30 1 3.9458 0.2869 1.2672 31 1 3.7125 -2.4537 -0.0598 32 1 5.1440 -1.3947 -0.0834 33 1 3.8174 -1.1698 -2.1738 34 1 3.8403 0.3533 -1.2530 35 1 1.8774 0.8703 -2.5973 36 1 0.3595 -0.0072 -2.2905 37 1 2.7995 -1.2009 -3.6799 38 1 1.3724 -0.5533 -4.5238 39 1 0.8942 -2.7787 -5.4213 40 1 2.3210 -3.4262 -4.5767 41 1 -0.0710 -7.3804 -5.4472 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385288114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:28 Heat of formation + Delta-G solvation = -135.728344 kcal Electronic energy + Delta-G solvation = -21736.450271 eV Core-core repulsion = 18423.404917 eV Total energy + Delta-G solvation = -3313.045354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.90841 -38.97697 -36.76943 -36.31191 -33.99850 -32.62858 -32.41061 -29.37613 -27.67969 -27.00126 -24.92178 -23.01351 -21.78417 -21.36103 -20.77637 -19.71964 -18.20852 -17.02795 -16.78161 -15.94284 -15.66684 -15.63109 -15.23996 -14.58364 -14.38340 -14.15247 -13.98306 -13.80203 -13.18302 -12.71998 -12.66594 -12.34607 -12.20591 -12.13275 -11.98059 -11.62374 -11.41604 -11.25200 -10.95934 -10.91872 -10.81411 -10.72674 -10.43701 -10.23357 -10.12093 -9.81316 -9.11477 -8.77395 -8.39400 -8.12353 -6.07170 -4.05279 2.02515 2.78944 3.26826 3.33819 3.35330 3.99203 4.38990 4.42023 4.57466 4.67863 4.78416 5.04516 5.17744 5.20347 5.24292 5.35540 5.36817 5.46582 5.54825 5.61879 5.68375 5.75374 5.81038 5.87992 5.91776 5.96998 6.02415 6.13404 6.24132 6.25135 6.29907 6.53088 6.65801 7.05335 7.19977 7.23687 7.65540 7.72139 8.11041 8.74174 9.06306 9.52867 11.06087 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026585 B = 0.004044 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.978880 B = 6922.021103 C = 7021.248641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.103 3.897 3 H 0.043 0.957 4 C -0.075 4.075 5 H 0.123 0.877 6 C 0.487 3.513 7 O -0.512 6.512 8 O -0.515 6.515 9 C -0.109 4.109 10 C -0.116 4.116 11 C 0.050 3.950 12 N -0.518 5.518 13 C 0.058 3.942 14 C 0.063 3.937 15 O -0.363 6.363 16 C 0.168 3.832 17 C -0.514 4.514 18 H 0.083 0.917 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.875 3.125 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.267 1.267 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.407 0.593 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.028 0.972 35 H 0.039 0.961 36 H 0.090 0.910 37 H 0.037 0.963 38 H 0.040 0.960 39 H -0.001 1.001 40 H -0.004 1.004 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.164 15.262 12.607 21.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.005 4.005 3 H 0.061 0.939 4 C -0.094 4.094 5 H 0.141 0.859 6 C 0.329 3.671 7 O -0.400 6.400 8 O -0.326 6.326 9 C -0.147 4.147 10 C -0.154 4.154 11 C -0.078 4.078 12 N -0.243 5.243 13 C -0.070 4.070 14 C -0.015 4.015 15 O -0.282 6.282 16 C 0.092 3.908 17 C -0.552 4.552 18 H 0.101 0.899 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.702 3.298 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.192 1.192 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.266 0.734 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.046 0.954 35 H 0.058 0.942 36 H 0.109 0.891 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.017 0.983 40 H 0.013 0.987 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.810 14.594 12.340 20.646 hybrid contribution 0.717 1.165 -0.706 1.539 sum 8.527 15.759 11.634 21.363 Atomic orbital electron populations 1.22163 0.93463 1.03261 1.02954 1.21285 0.96347 0.94452 0.88414 0.93884 1.21115 0.97851 1.01878 0.88570 0.85932 1.23516 0.76399 0.82491 0.84709 1.90674 1.36052 1.26220 1.87097 1.84556 1.72583 1.58657 1.16844 1.21566 0.91974 1.01455 0.99689 1.21588 0.99902 1.01066 0.92815 1.22196 0.87667 0.98340 0.99598 1.61758 1.06528 1.54921 1.01120 1.22207 1.01395 0.94281 0.89076 1.22343 0.96101 0.87627 0.95445 1.88010 1.70966 1.23045 1.46176 1.20574 0.95130 0.88977 0.86085 1.20898 1.30154 0.95648 1.08458 0.89920 1.24761 0.95446 0.94941 0.97839 1.69876 1.42282 1.04485 1.36949 0.86869 0.80734 0.78549 0.83671 1.20001 1.20872 1.19182 0.91119 0.90589 0.92336 0.73407 0.90344 0.92002 0.89942 0.91002 0.89864 0.95388 0.94249 0.89144 0.94475 0.94184 0.98318 0.98656 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 8.28 37.16 0.31 -1.87 16 2 C 0.10 1.34 1.60 -67.72 -0.11 1.23 16 3 H 0.04 0.56 8.08 -51.93 -0.42 0.14 16 4 C -0.07 -0.85 2.32 -91.69 -0.21 -1.07 16 5 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 6 C 0.49 5.38 7.29 36.00 0.26 5.64 16 7 O -0.51 -6.86 14.51 -18.75 -0.27 -7.13 16 8 O -0.51 -4.33 13.35 -39.24 -0.52 -4.85 16 9 C -0.11 -1.07 5.21 -26.61 -0.14 -1.20 16 10 C -0.12 -1.24 6.09 -26.65 -0.16 -1.41 16 11 C 0.05 0.62 5.30 -3.83 -0.02 0.60 16 12 N -0.52 -7.49 4.43 -226.68 -1.00 -8.49 16 13 C 0.06 0.85 5.09 -3.82 -0.02 0.83 16 14 C 0.06 1.10 6.03 37.16 0.22 1.32 16 15 O -0.36 -8.48 10.27 -35.23 -0.36 -8.85 16 16 C 0.17 4.30 4.76 36.01 0.17 4.47 16 17 C -0.51 -15.40 9.99 -34.44 -0.34 -15.74 16 18 H 0.08 2.72 8.06 -52.49 -0.42 2.30 16 19 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 20 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 21 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.08 1.03 5.46 -51.93 -0.28 0.74 16 27 H 0.06 0.76 6.56 -51.93 -0.34 0.42 16 28 H 0.41 1.67 9.10 45.56 0.41 2.08 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.11 6.21 -51.92 -0.32 0.79 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.04 0.49 8.10 -51.93 -0.42 0.07 16 36 H 0.09 1.36 5.74 -51.93 -0.30 1.06 16 37 H 0.04 0.61 6.30 -51.93 -0.33 0.29 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 40 H 0.00 -0.10 7.57 -51.93 -0.39 -0.50 16 41 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 324.00 15.07 4.88 4.88 Total: -1.00 -34.03 324.00 -7.05 -41.08 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.74 Total: -1.21 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -0.14 Total: -5.18 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.23 Total: -35.60 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -1.16 Total: -20.83 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.03 -7.05 -41.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385288114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.651 kcal (2) G-P(sol) polarization free energy of solvation -34.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds