Wall clock time and date at job start Mon Mar 30 2020 05:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.45411 * 2 1 4 4 C 1.53033 * 109.46366 * 119.97853 * 2 1 3 5 5 H 1.09001 * 109.50388 * 59.25419 * 4 2 1 6 6 C 1.50695 * 109.50445 * 299.13531 * 4 2 1 7 7 O 1.20827 * 120.00008 * 0.19256 * 6 4 2 8 8 O 1.34225 * 120.00291 * 180.20114 * 6 4 2 9 9 C 1.53120 * 109.27975 * 179.19104 * 4 2 1 10 10 C 1.53113 * 109.16410 * 302.34684 * 9 4 2 11 11 C 1.53039 * 109.27666 * 57.65239 * 10 9 4 12 12 N 1.46845 * 109.52330 * 300.81811 * 11 10 9 13 13 C 1.46901 * 111.00127 * 185.83893 * 12 11 10 14 14 C 1.52998 * 109.47036 * 67.70735 * 13 12 11 15 15 O 1.42895 * 109.47241 * 64.99839 * 14 13 12 16 16 C 1.42901 * 113.99979 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47289 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99665 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00490 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00253 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99717 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47117 * 90.00082 * 21 19 17 23 23 H 1.48500 * 109.47279 * 209.99988 * 21 19 17 24 24 H 1.48506 * 109.47480 * 330.00462 * 21 19 17 25 25 H 1.08991 * 109.47059 * 171.97947 * 1 2 3 26 26 H 1.09000 * 109.46587 * 291.97436 * 1 2 3 27 27 H 1.09001 * 109.47008 * 51.97558 * 1 2 3 28 28 H 0.96698 * 117.00620 * 179.97438 * 8 6 4 29 29 H 1.09000 * 109.52719 * 182.44018 * 9 4 2 30 30 H 1.09006 * 109.52158 * 62.25489 * 9 4 2 31 31 H 1.09004 * 109.50755 * 297.71218 * 10 9 4 32 32 H 1.09004 * 109.50815 * 177.59070 * 10 9 4 33 33 H 1.09007 * 109.46448 * 180.81055 * 11 10 9 34 34 H 1.08997 * 109.45642 * 60.83189 * 11 10 9 35 35 H 1.09000 * 109.47421 * 307.70410 * 13 12 11 36 36 H 1.09004 * 109.47362 * 187.70536 * 13 12 11 37 37 H 1.09004 * 109.47100 * 304.99690 * 14 13 12 38 38 H 1.08999 * 109.47245 * 184.99927 * 14 13 12 39 39 H 1.09003 * 109.46816 * 299.99795 * 16 15 14 40 40 H 1.08997 * 109.47644 * 59.99894 * 16 15 14 41 41 H 0.96996 * 120.00008 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7210 1.2498 5 1 1.6660 -1.7448 1.2574 6 6 1.5555 0.0016 2.4803 7 8 0.8694 0.9900 2.3697 8 8 1.8864 -0.4526 3.6993 9 6 3.5710 -0.7362 1.2354 10 6 4.0548 -1.4188 -0.0469 11 6 3.4865 -0.6776 -1.2592 12 7 2.0193 -0.6917 -1.1995 13 6 1.4373 -0.1104 -2.4166 14 6 1.7260 -1.0263 -3.6076 15 8 1.0519 -2.2728 -3.4244 16 6 1.2572 -3.2063 -4.4867 17 6 0.5044 -4.4778 -4.1907 18 1 -0.0735 -4.5641 -3.2824 19 6 0.5523 -5.5304 -5.0799 20 7 -0.1051 -6.6398 -4.8218 21 14 1.5501 -5.3802 -6.6519 22 1 2.9370 -5.8500 -6.4047 23 1 0.9281 -6.2108 -7.7143 24 1 1.5785 -3.9605 -7.0866 25 1 -0.3633 -1.0175 -0.1434 26 1 -0.3632 0.3846 0.9530 27 1 -0.3633 0.6330 -0.8095 28 1 1.5525 0.0443 4.4586 29 1 3.9381 -1.2865 2.1018 30 1 3.9458 0.2869 1.2672 31 1 3.7125 -2.4537 -0.0598 32 1 5.1440 -1.3947 -0.0834 33 1 3.8174 -1.1698 -2.1738 34 1 3.8403 0.3533 -1.2530 35 1 1.8774 0.8703 -2.5973 36 1 0.3595 -0.0072 -2.2905 37 1 2.7995 -1.2009 -3.6799 38 1 1.3724 -0.5533 -4.5238 39 1 0.8942 -2.7787 -5.4213 40 1 2.3210 -3.4262 -4.5767 41 1 -0.0710 -7.3804 -5.4472 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385288114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:28 Heat of formation + Delta-G solvation = -161.418176 kcal Electronic energy + Delta-G solvation = -21737.564266 eV Core-core repulsion = 18423.404917 eV Total energy + Delta-G solvation = -3314.159349 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.80480 -39.98441 -38.38458 -37.15216 -35.21442 -34.61213 -33.49823 -30.90757 -29.30029 -28.23968 -25.88202 -24.15443 -23.84828 -22.28849 -21.85666 -20.67732 -19.07066 -18.98816 -17.92548 -17.39651 -16.91856 -16.71290 -16.56603 -16.06132 -15.70776 -15.51976 -14.97014 -14.84843 -14.60455 -14.19787 -14.05275 -13.73032 -13.30209 -13.20358 -13.06025 -13.02945 -12.74440 -12.53596 -12.36276 -12.31076 -11.98451 -11.87257 -11.73460 -11.67083 -11.27965 -11.21450 -11.07279 -10.88557 -10.23739 -9.16583 -8.34262 -6.41438 1.16137 1.34364 1.37716 1.48520 1.99590 2.31607 2.97848 2.98606 3.18036 3.50579 3.67600 3.93022 4.06104 4.18375 4.26771 4.30215 4.36799 4.45506 4.52471 4.54972 4.60591 4.63886 4.70385 4.77446 4.82981 4.90506 4.94824 5.02296 5.05823 5.12639 5.19562 5.28336 5.40697 5.48326 5.64705 5.97657 6.15277 6.23471 6.63116 6.85196 6.99718 7.23429 8.83197 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026585 B = 0.004044 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.978880 B = 6922.021103 C = 7021.248641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.108 3.892 3 H 0.048 0.952 4 C -0.078 4.078 5 H 0.110 0.890 6 C 0.495 3.505 7 O -0.538 6.538 8 O -0.508 6.508 9 C -0.101 4.101 10 C -0.113 4.113 11 C 0.047 3.953 12 N -0.543 5.543 13 C 0.061 3.939 14 C 0.055 3.945 15 O -0.391 6.391 16 C 0.180 3.820 17 C -0.541 4.541 18 H 0.028 0.972 19 C 0.013 3.987 20 N -0.944 5.944 21 Si 0.956 3.044 22 H -0.259 1.259 23 H -0.274 1.274 24 H -0.246 1.246 25 H 0.046 0.954 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.428 0.572 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.008 0.992 40 H 0.008 0.992 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.487 16.864 11.952 23.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.000 4.000 3 H 0.066 0.934 4 C -0.097 4.097 5 H 0.128 0.872 6 C 0.339 3.661 7 O -0.429 6.429 8 O -0.321 6.321 9 C -0.139 4.139 10 C -0.151 4.151 11 C -0.080 4.080 12 N -0.269 5.269 13 C -0.066 4.066 14 C -0.022 4.022 15 O -0.310 6.310 16 C 0.104 3.896 17 C -0.578 4.578 18 H 0.046 0.954 19 C -0.185 4.185 20 N -0.584 5.584 21 Si 0.777 3.223 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.169 1.169 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.290 0.710 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.139 16.215 11.730 22.434 hybrid contribution -0.070 0.657 -0.355 0.750 sum 10.069 16.872 11.375 22.703 Atomic orbital electron populations 1.22098 0.94460 1.01736 1.03008 1.21226 0.95521 0.94710 0.88583 0.93396 1.21082 0.99262 1.00939 0.88428 0.87243 1.23309 0.75733 0.81819 0.85286 1.90668 1.37251 1.27410 1.87570 1.84501 1.72181 1.58682 1.16781 1.21540 0.90382 1.02256 0.99673 1.21577 1.01228 0.99590 0.92703 1.22258 0.86421 0.99483 0.99832 1.61722 1.07984 1.55787 1.01417 1.22153 1.01191 0.94842 0.88416 1.22687 0.96454 0.85554 0.97511 1.87969 1.72260 1.25085 1.45725 1.20268 0.94775 0.87724 0.86845 1.21162 1.30894 0.98680 1.07106 0.95389 1.25833 0.96508 0.93965 1.02194 1.70038 1.43876 1.05634 1.38868 0.85609 0.79050 0.79840 0.77818 1.18346 1.19949 1.16933 0.93449 0.90594 0.92075 0.71016 0.88966 0.90773 0.92167 0.88634 0.90970 0.93527 0.91199 0.90172 0.93146 0.92695 0.97410 0.97437 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.30 8.28 71.98 0.60 -3.70 16 2 C 0.11 2.72 1.60 44.94 0.07 2.79 16 3 H 0.05 1.17 8.08 -2.39 -0.02 1.16 16 4 C -0.08 -1.71 2.32 -11.49 -0.03 -1.74 16 5 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 6 C 0.50 10.35 7.29 71.23 0.52 10.87 16 7 O -0.54 -13.91 14.51 21.96 0.32 -13.59 16 8 O -0.51 -7.57 13.35 -51.37 -0.69 -8.25 16 9 C -0.10 -1.76 5.21 30.67 0.16 -1.60 16 10 C -0.11 -2.24 6.09 30.64 0.19 -2.06 16 11 C 0.05 1.09 5.30 86.33 0.46 1.55 16 12 N -0.54 -15.33 4.43 -871.08 -3.86 -19.19 16 13 C 0.06 1.72 5.09 86.30 0.44 2.16 16 14 C 0.06 1.85 6.03 71.98 0.43 2.28 16 15 O -0.39 -18.42 10.27 -148.98 -1.53 -19.95 16 16 C 0.18 9.14 4.76 71.24 0.34 9.48 16 17 C -0.54 -33.47 9.99 25.60 0.26 -33.21 16 18 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 19 C 0.01 0.75 5.47 84.66 0.46 1.21 16 20 N -0.94 -60.17 13.96 21.45 0.30 -59.87 16 21 Si 0.96 43.69 27.47 68.60 1.88 45.58 16 22 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.25 -10.35 6.54 99.48 0.65 -9.69 16 25 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 26 H 0.08 2.08 5.46 -2.39 -0.01 2.07 16 27 H 0.06 1.60 6.56 -2.39 -0.02 1.59 16 28 H 0.43 2.57 9.10 -74.06 -0.67 1.89 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.81 6.21 -2.38 -0.01 1.79 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 36 H 0.08 2.40 5.74 -2.39 -0.01 2.38 16 37 H 0.05 1.56 6.30 -2.38 -0.02 1.55 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.01 0.40 7.20 -2.39 -0.02 0.38 16 40 H 0.01 0.38 7.57 -2.39 -0.02 0.36 16 41 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -75.60 324.00 0.62 -74.98 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.30 Total: 12.26 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 3.90 Total: -11.96 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -3.56 Total: -79.06 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -1.90 Total: -41.79 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.58 kcal Total: -75.60 0.62 -74.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385288114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.440 kcal (2) G-P(sol) polarization free energy of solvation -75.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds