Wall clock time and date at job start Mon Mar 30 2020 05:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.47398 * 2 1 4 4 C 1.42896 * 114.00065 * 175.82770 * 3 2 1 5 5 C 1.50706 * 110.45813 * 59.68555 * 4 3 2 6 6 O 1.21280 * 120.00512 * 215.07299 * 5 4 3 7 7 N 1.34778 * 119.99770 * 35.33702 * 5 4 3 8 8 C 1.46499 * 120.00386 * 184.14868 * 7 5 4 9 9 H 1.09004 * 109.46738 * 35.00440 * 8 7 5 10 10 C 1.50697 * 109.47441 * 155.00114 * 8 7 5 11 11 H 1.07998 * 119.99916 * 0.02562 * 10 8 7 12 12 C 1.37876 * 120.00189 * 179.97438 * 10 8 7 13 13 N 1.31516 * 119.99811 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 120.00120 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47136 * 60.00396 * 14 12 10 16 16 H 1.48497 * 109.47078 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47228 * 300.00319 * 14 12 10 18 18 C 1.53003 * 109.47132 * 275.00610 * 8 7 5 19 19 C 1.53005 * 109.47032 * 64.99737 * 18 8 7 20 20 C 1.54506 * 110.51712 * 297.08029 * 4 3 2 21 21 C 1.54798 * 103.91562 * 241.18558 * 20 4 3 22 22 O 1.44425 * 104.85374 * 336.11716 * 21 20 4 23 23 C 1.44425 * 105.27776 * 40.46044 * 22 21 20 24 24 H 1.08997 * 109.46560 * 60.00132 * 1 2 3 25 25 H 1.08999 * 109.47076 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47072 * 300.00304 * 1 2 3 27 27 H 1.08994 * 109.47250 * 239.99515 * 2 1 3 28 28 H 1.09002 * 109.46970 * 120.00046 * 2 1 3 29 29 H 0.97005 * 120.00108 * 4.15511 * 7 5 4 30 30 H 0.96998 * 120.00285 * 179.97438 * 13 12 10 31 31 H 1.08999 * 109.46960 * 184.99608 * 18 8 7 32 32 H 1.08990 * 109.46793 * 304.99671 * 18 8 7 33 33 H 1.08997 * 109.47079 * 60.00049 * 19 18 8 34 34 H 1.09000 * 109.46483 * 180.02562 * 19 18 8 35 35 H 1.08999 * 109.47143 * 299.99759 * 19 18 8 36 36 H 1.09006 * 110.50808 * 359.86141 * 20 4 3 37 37 H 1.08999 * 110.51382 * 122.56948 * 20 4 3 38 38 H 1.08997 * 110.38737 * 217.24770 * 21 20 4 39 39 H 1.09002 * 110.39759 * 94.98701 * 21 20 4 40 40 H 1.09002 * 110.37525 * 200.66203 * 23 22 21 41 41 H 1.08996 * 110.36969 * 78.32129 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4276 1.4612 0.0950 5 6 4.0907 0.7634 -1.0646 6 8 5.1486 0.1924 -0.9044 7 7 3.5106 0.7784 -2.2811 8 6 4.1073 0.0247 -3.3866 9 1 4.5498 -0.8944 -3.0025 10 6 3.0414 -0.3147 -4.3963 11 1 2.0215 -0.0002 -4.2313 12 6 3.3683 -1.0260 -5.5313 13 7 4.6104 -1.4086 -5.7325 14 14 2.0471 -1.4461 -6.7832 15 1 1.4444 -0.1938 -7.3060 16 1 2.6520 -2.2102 -7.9037 17 1 0.9946 -2.2690 -6.1349 18 6 5.1916 0.8723 -4.0550 19 6 6.3338 1.1121 -3.0655 20 6 3.9292 0.8791 1.4355 21 6 4.5987 2.0853 2.1378 22 8 4.9619 2.9828 1.0661 23 6 3.8495 2.9464 0.1458 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.6980 1.2883 -2.4247 30 1 4.8404 -1.9093 -6.5308 31 1 5.5739 0.3483 -4.9310 32 1 4.7682 1.8292 -4.3600 33 1 6.7571 0.1552 -2.7605 34 1 7.1060 1.7163 -3.5416 35 1 5.9515 1.6361 -2.1895 36 1 3.0927 0.5066 2.0269 37 1 4.6566 0.0866 1.2595 38 1 5.4873 1.7632 2.6806 39 1 3.8951 2.5687 2.8156 40 1 4.1625 3.2859 -0.8416 41 1 3.0296 3.5612 0.5170 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401738331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:44 Heat of formation + Delta-G solvation = -131.463198 kcal Electronic energy + Delta-G solvation = -22783.194247 eV Core-core repulsion = 19470.333844 eV Total energy + Delta-G solvation = -3312.860403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.57882 -38.13082 -37.20181 -35.07980 -32.39027 -31.91373 -30.84843 -30.46354 -28.71425 -26.92619 -23.83596 -23.22388 -22.67433 -21.79758 -19.86833 -19.28324 -18.05867 -16.91717 -16.22028 -15.70895 -15.55413 -15.14117 -15.05964 -14.63005 -14.33102 -14.01279 -13.41471 -13.24645 -12.82019 -12.63257 -12.46508 -11.98127 -11.88251 -11.60794 -11.52006 -11.42192 -11.22454 -11.19648 -11.00982 -10.83551 -10.73034 -10.35603 -10.16646 -10.04867 -9.75998 -9.59443 -9.07480 -8.76953 -8.50231 -7.84597 -6.14329 -4.24190 3.14264 3.23671 3.29294 3.30135 3.46356 3.91460 4.01761 4.33566 4.55344 4.89591 5.04896 5.13405 5.16674 5.19008 5.28753 5.34390 5.49686 5.58235 5.62269 5.69720 5.79495 5.83736 6.03654 6.07821 6.16471 6.42011 6.49737 6.62848 6.68799 7.04817 7.09571 7.23049 7.36492 7.42722 7.60705 7.72356 7.87544 8.16366 8.62180 8.73497 9.05777 9.43098 10.90841 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020724 B = 0.006445 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.759025 B = 4343.412508 C = 5298.406810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 O -0.366 6.366 4 C 0.066 3.934 5 C 0.488 3.512 6 O -0.533 6.533 7 N -0.698 5.698 8 C 0.271 3.729 9 H 0.047 0.953 10 C -0.535 4.535 11 H 0.061 0.939 12 C 0.068 3.932 13 N -0.882 5.882 14 Si 0.901 3.099 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.277 1.277 18 C -0.128 4.128 19 C -0.137 4.137 20 C -0.173 4.173 21 C 0.051 3.949 22 O -0.362 6.362 23 C 0.069 3.931 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.392 0.608 30 H 0.265 0.735 31 H 0.099 0.901 32 H 0.031 0.969 33 H 0.048 0.952 34 H 0.021 0.979 35 H 0.041 0.959 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.102 0.898 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.419 5.277 12.265 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.031 4.031 3 O -0.285 6.285 4 C 0.022 3.978 5 C 0.271 3.729 6 O -0.412 6.412 7 N -0.346 5.346 8 C 0.170 3.830 9 H 0.065 0.935 10 C -0.573 4.573 11 H 0.079 0.921 12 C -0.136 4.136 13 N -0.519 5.519 14 Si 0.728 3.272 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.202 1.202 18 C -0.167 4.167 19 C -0.194 4.194 20 C -0.211 4.211 21 C -0.025 4.025 22 O -0.281 6.281 23 C -0.008 4.008 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.226 0.774 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.040 0.960 35 H 0.060 0.940 36 H 0.104 0.896 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.468 5.009 12.168 13.897 hybrid contribution -1.143 -0.402 -0.785 1.443 sum -5.610 4.607 11.384 13.501 Atomic orbital electron populations 1.21706 0.93420 1.02351 1.02848 1.22675 0.95546 0.83390 1.01491 1.87890 1.18553 1.27439 1.94642 1.23212 0.82054 0.97842 0.94670 1.20483 0.85960 0.81740 0.84752 1.90676 1.21643 1.44776 1.84075 1.46536 1.28292 1.49761 1.09975 1.18813 0.91770 0.90163 0.82298 0.93542 1.21183 0.94483 1.36439 1.05222 0.92116 1.24879 0.95625 0.95292 0.97791 1.69885 1.17091 1.37281 1.27661 0.86521 0.81490 0.78557 0.80616 1.20119 1.21128 1.20212 1.21939 0.95629 0.98824 1.00282 1.21865 0.98230 1.00447 0.98891 1.23535 1.02217 1.00490 0.94865 1.23389 0.99970 0.88936 0.90239 1.89194 1.39695 1.65177 1.33999 1.23201 0.90029 0.92073 0.95528 0.91533 0.91042 0.92279 0.91525 0.93247 0.77440 0.92482 0.88315 0.95025 0.93267 0.95953 0.93958 0.89578 0.88007 0.88775 0.92145 0.87943 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 37.16 0.38 -1.26 16 2 C 0.05 0.63 5.98 37.16 0.22 0.85 16 3 O -0.37 -5.36 9.45 -35.23 -0.33 -5.69 16 4 C 0.07 1.03 1.04 -90.20 -0.09 0.94 16 5 C 0.49 9.63 4.34 -10.98 -0.05 9.59 16 6 O -0.53 -12.23 12.37 5.56 0.07 -12.16 16 7 N -0.70 -14.43 4.17 -54.93 -0.23 -14.66 16 8 C 0.27 6.73 2.24 -69.08 -0.15 6.58 16 9 H 0.05 1.34 7.65 -51.93 -0.40 0.94 16 10 C -0.53 -13.90 8.73 -34.44 -0.30 -14.20 16 11 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 12 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 13 N -0.88 -24.49 11.29 55.43 0.63 -23.87 16 14 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 19 C -0.14 -3.13 8.47 37.16 0.31 -2.81 16 20 C -0.17 -2.39 5.80 -24.99 -0.14 -2.54 16 21 C 0.05 0.64 7.64 38.10 0.29 0.93 16 22 O -0.36 -5.61 11.65 -35.23 -0.41 -6.02 16 23 C 0.07 1.00 6.92 37.94 0.26 1.27 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.10 6.81 -51.93 -0.35 0.75 16 28 H 0.05 0.63 6.51 -51.93 -0.34 0.29 16 29 H 0.39 7.46 8.10 -40.82 -0.33 7.13 16 30 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 1.19 7.80 -51.93 -0.41 0.79 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.04 0.95 5.54 -51.93 -0.29 0.66 16 36 H 0.09 1.01 6.74 -51.93 -0.35 0.66 16 37 H 0.10 1.61 6.76 -51.93 -0.35 1.26 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.10 1.53 7.86 -51.93 -0.41 1.12 16 41 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 LS Contribution 322.82 15.07 4.86 4.86 Total: -1.00 -29.38 322.82 -6.39 -35.77 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -6.45 Total: 8.64 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 0.49 Total: -2.25 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.40 Total: -38.53 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.67 Total: -23.88 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.38 -6.39 -35.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401738331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.692 kcal (2) G-P(sol) polarization free energy of solvation -29.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds