Wall clock time and date at job start Mon Mar 30 2020 05:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47119 * 2 1 4 4 H 1.08998 * 109.47480 * 54.99824 * 3 2 1 5 5 C 1.50696 * 109.47377 * 174.99966 * 3 2 1 6 6 H 1.08008 * 120.00223 * 119.99386 * 5 3 2 7 7 C 1.37877 * 120.00092 * 299.99956 * 5 3 2 8 8 N 1.31514 * 120.00128 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00047 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47208 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47270 * 120.00359 * 9 7 5 12 12 H 1.48508 * 109.47077 * 239.99895 * 9 7 5 13 13 N 1.46505 * 109.47128 * 295.00102 * 3 2 1 14 14 C 1.34778 * 120.00009 * 84.99740 * 13 3 2 15 15 O 1.21274 * 120.00167 * 5.01573 * 14 13 3 16 16 C 1.50698 * 119.99757 * 185.01091 * 14 13 3 17 17 H 1.09005 * 109.47034 * 45.94554 * 16 14 13 18 18 O 1.42898 * 109.47152 * 165.94224 * 16 14 13 19 19 C 1.53003 * 109.47320 * 285.94278 * 16 14 13 20 20 C 1.53177 * 109.54049 * 184.83218 * 19 16 14 21 21 C 1.53091 * 109.16047 * 183.15505 * 20 19 16 22 22 O 1.42903 * 109.41915 * 57.60753 * 21 20 19 23 23 C 1.42902 * 114.09675 * 298.84669 * 22 21 20 24 24 C 1.53092 * 109.41941 * 61.15254 * 23 22 21 25 25 H 1.08998 * 109.47062 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47139 * 299.99940 * 1 2 3 27 27 H 1.08997 * 109.46826 * 59.99932 * 1 2 3 28 28 H 1.09001 * 109.47139 * 240.00059 * 2 1 3 29 29 H 1.09004 * 109.46763 * 119.99657 * 2 1 3 30 30 H 0.96989 * 120.00272 * 179.97438 * 8 7 5 31 31 H 0.97005 * 119.99729 * 265.00459 * 13 3 2 32 32 H 0.96704 * 113.99927 * 59.99826 * 18 16 14 33 33 H 1.08994 * 109.54219 * 305.00707 * 19 16 14 34 34 H 1.09002 * 109.52407 * 63.24822 * 20 19 16 35 35 H 1.09000 * 109.57778 * 303.08767 * 20 19 16 36 36 H 1.08996 * 109.48218 * 177.59256 * 21 20 19 37 37 H 1.09004 * 109.48282 * 297.62237 * 21 20 19 38 38 H 1.09009 * 109.47834 * 301.17222 * 23 22 21 39 39 H 1.09000 * 109.48557 * 181.13832 * 23 22 21 40 40 H 1.09002 * 109.52614 * 182.48841 * 24 23 22 41 41 H 1.09006 * 109.51896 * 62.29792 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6524 7 6 4.1433 0.8785 1.2280 8 7 3.4063 0.3375 2.1734 9 14 6.0050 0.8802 1.3811 10 1 6.5988 1.5443 0.1931 11 1 6.4000 1.6158 2.6091 12 1 6.4963 -0.5189 1.4627 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3045 2.7128 -0.4071 16 6 -0.0069 3.2381 -2.6885 17 1 0.2240 2.5323 -3.4865 18 8 -1.4154 3.4771 -2.6568 19 6 0.7283 4.5554 -2.9441 20 6 0.1934 5.2001 -4.2265 21 6 0.9880 6.4761 -4.5165 22 8 2.3763 6.1563 -4.6280 23 6 2.9425 5.5938 -3.4426 24 6 2.2264 4.2823 -3.1094 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.8293 -0.0609 2.9499 31 1 2.2720 2.1231 -1.9978 32 1 -1.6937 4.0973 -1.9691 33 1 0.5699 5.2304 -2.1031 34 1 -0.8601 5.4485 -4.0974 35 1 0.3044 4.5049 -5.0586 36 1 0.6403 6.9164 -5.4510 37 1 0.8431 7.1874 -3.7034 38 1 2.8231 6.2935 -2.6153 39 1 4.0027 5.3983 -3.6034 40 1 2.6269 3.8742 -2.1814 41 1 2.3794 3.5680 -3.9185 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545170782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:02 Heat of formation + Delta-G solvation = -152.731381 kcal Electronic energy + Delta-G solvation = -22377.817484 eV Core-core repulsion = 19064.034823 eV Total energy + Delta-G solvation = -3313.782661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.20622 -38.75218 -36.59198 -35.00746 -33.77647 -32.34693 -31.30245 -30.75660 -28.10160 -26.65307 -23.92332 -23.46976 -22.83622 -20.45089 -20.37599 -19.39983 -17.88246 -16.65973 -16.18134 -16.02841 -15.93411 -15.24900 -14.90175 -14.66998 -14.42121 -14.14470 -13.65341 -13.23958 -12.98455 -12.71364 -12.54061 -12.31369 -11.79859 -11.55907 -11.42884 -11.36449 -11.27106 -11.00573 -10.88676 -10.72252 -10.60943 -10.33627 -10.30608 -10.22663 -9.69207 -9.62668 -9.09430 -8.81852 -8.53967 -7.89140 -6.17022 -4.26892 3.19611 3.21242 3.28422 3.30264 3.80748 3.93551 4.30870 4.33343 4.63955 4.68390 4.83874 4.94904 5.13951 5.14961 5.24075 5.32807 5.46858 5.53924 5.58613 5.62003 5.75635 5.79393 6.00451 6.08478 6.21889 6.34594 6.40195 6.60596 6.98706 7.11173 7.13764 7.30812 7.37590 7.54595 7.60461 7.69069 7.84654 8.12928 8.57410 8.71684 9.02541 9.40632 10.88296 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018390 B = 0.006082 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.192707 B = 4602.775153 C = 5900.498920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.267 3.733 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.705 5.705 14 C 0.476 3.524 15 O -0.545 6.545 16 C 0.095 3.905 17 H 0.115 0.885 18 O -0.541 6.541 19 C -0.114 4.114 20 C -0.142 4.142 21 C 0.060 3.940 22 O -0.386 6.386 23 C 0.064 3.936 24 C -0.167 4.167 25 H 0.025 0.975 26 H 0.049 0.951 27 H 0.036 0.964 28 H 0.031 0.969 29 H 0.100 0.900 30 H 0.264 0.736 31 H 0.389 0.611 32 H 0.381 0.619 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.285 8.618 -11.466 14.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.166 3.834 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.356 5.356 14 C 0.260 3.740 15 O -0.424 6.424 16 C 0.032 3.968 17 H 0.132 0.868 18 O -0.346 6.346 19 C -0.133 4.133 20 C -0.180 4.180 21 C -0.017 4.017 22 O -0.305 6.305 23 C -0.012 4.012 24 C -0.205 4.205 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.223 0.777 32 H 0.229 0.771 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.688 8.140 -11.242 14.361 hybrid contribution 1.146 0.142 0.573 1.289 sum -2.542 8.282 -10.670 13.744 Atomic orbital electron populations 1.21823 0.98437 0.98298 1.01021 1.21944 0.92528 0.99854 1.02378 1.18818 0.94316 0.89151 0.81164 0.93226 1.21239 0.90610 1.39121 1.06270 0.92065 1.24885 0.98583 0.94771 0.95384 1.69897 1.35075 1.37550 1.09337 0.86421 0.84879 0.77839 0.78132 1.19712 1.20887 1.20851 1.46761 1.14500 1.55606 1.18733 1.21170 0.82985 0.79367 0.90467 1.90672 1.53687 1.58607 1.39411 1.21958 0.82325 0.96256 0.96288 0.86764 1.86521 1.20484 1.68968 1.58605 1.21786 0.95674 0.96966 0.98876 1.22137 1.00432 0.97975 0.97475 1.22582 0.81623 0.95674 1.01780 1.87917 1.23580 1.82261 1.36723 1.22552 0.97845 0.93377 0.87444 1.22487 0.94597 0.99301 1.04102 0.95607 0.93212 0.94469 0.94974 0.88197 0.92577 0.77667 0.77070 0.90336 0.90216 0.90828 0.88999 0.93351 0.93094 0.88489 0.88675 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.58 37.16 0.32 -2.77 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.49 2.25 -69.08 -0.16 6.34 16 4 H 0.05 1.41 7.51 -51.93 -0.39 1.02 16 5 C -0.53 -13.57 8.73 -34.44 -0.30 -13.87 16 6 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.22 11.29 55.43 0.63 -23.59 16 9 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.71 -13.78 4.06 -54.94 -0.22 -14.00 16 14 C 0.48 8.92 5.27 -10.99 -0.06 8.86 16 15 O -0.54 -12.25 13.86 -13.94 -0.19 -12.44 16 16 C 0.09 1.35 3.01 -27.88 -0.08 1.26 16 17 H 0.11 1.52 8.14 -51.93 -0.42 1.09 16 18 O -0.54 -7.81 12.27 -54.74 -0.67 -8.48 16 19 C -0.11 -1.36 2.01 -90.43 -0.18 -1.55 16 20 C -0.14 -1.45 5.17 -26.59 -0.14 -1.59 16 21 C 0.06 0.59 6.84 37.20 0.25 0.85 16 22 O -0.39 -4.67 10.77 -35.23 -0.38 -5.05 16 23 C 0.06 0.73 6.84 37.20 0.25 0.99 16 24 C -0.17 -2.00 4.37 -26.59 -0.12 -2.12 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 1.18 7.92 -51.93 -0.41 0.77 16 27 H 0.04 0.81 5.75 -51.93 -0.30 0.51 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.39 6.62 6.42 -40.82 -0.26 6.36 16 32 H 0.38 4.79 8.70 45.56 0.40 5.19 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 0.76 7.68 -51.93 -0.40 0.36 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 39 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.09 1.32 5.72 -51.93 -0.30 1.02 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 320.03 15.07 4.82 4.82 Total: -1.00 -29.85 320.03 -7.22 -37.08 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -5.74 Total: 11.71 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -0.45 Total: -5.15 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.40 Total: -37.60 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -1.24 Total: -25.97 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.85 -7.22 -37.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545170782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.654 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds