Wall clock time and date at job start Mon Mar 30 2020 05:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47119 * 2 1 4 4 H 1.08998 * 109.47480 * 54.99824 * 3 2 1 5 5 C 1.50696 * 109.47377 * 174.99966 * 3 2 1 6 6 H 1.08008 * 120.00223 * 119.99386 * 5 3 2 7 7 C 1.37877 * 120.00092 * 299.99956 * 5 3 2 8 8 N 1.31514 * 120.00128 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00047 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47208 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47270 * 120.00359 * 9 7 5 12 12 H 1.48508 * 109.47077 * 239.99895 * 9 7 5 13 13 N 1.46505 * 109.47128 * 295.00102 * 3 2 1 14 14 C 1.34778 * 120.00009 * 84.99740 * 13 3 2 15 15 O 1.21274 * 120.00167 * 5.01573 * 14 13 3 16 16 C 1.50698 * 119.99757 * 185.01091 * 14 13 3 17 17 H 1.09005 * 109.47034 * 45.94554 * 16 14 13 18 18 O 1.42898 * 109.47152 * 165.94224 * 16 14 13 19 19 C 1.53003 * 109.47320 * 285.94278 * 16 14 13 20 20 C 1.53177 * 109.54049 * 184.83218 * 19 16 14 21 21 C 1.53091 * 109.16047 * 183.15505 * 20 19 16 22 22 O 1.42903 * 109.41915 * 57.60753 * 21 20 19 23 23 C 1.42902 * 114.09675 * 298.84669 * 22 21 20 24 24 C 1.53092 * 109.41941 * 61.15254 * 23 22 21 25 25 H 1.08998 * 109.47062 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47139 * 299.99940 * 1 2 3 27 27 H 1.08997 * 109.46826 * 59.99932 * 1 2 3 28 28 H 1.09001 * 109.47139 * 240.00059 * 2 1 3 29 29 H 1.09004 * 109.46763 * 119.99657 * 2 1 3 30 30 H 0.96989 * 120.00272 * 179.97438 * 8 7 5 31 31 H 0.97005 * 119.99729 * 265.00459 * 13 3 2 32 32 H 0.96704 * 113.99927 * 59.99826 * 18 16 14 33 33 H 1.08994 * 109.54219 * 305.00707 * 19 16 14 34 34 H 1.09002 * 109.52407 * 63.24822 * 20 19 16 35 35 H 1.09000 * 109.57778 * 303.08767 * 20 19 16 36 36 H 1.08996 * 109.48218 * 177.59256 * 21 20 19 37 37 H 1.09004 * 109.48282 * 297.62237 * 21 20 19 38 38 H 1.09009 * 109.47834 * 301.17222 * 23 22 21 39 39 H 1.09000 * 109.48557 * 181.13832 * 23 22 21 40 40 H 1.09002 * 109.52614 * 182.48841 * 24 23 22 41 41 H 1.09006 * 109.51896 * 62.29792 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6524 7 6 4.1433 0.8785 1.2280 8 7 3.4063 0.3375 2.1734 9 14 6.0050 0.8802 1.3811 10 1 6.5988 1.5443 0.1931 11 1 6.4000 1.6158 2.6091 12 1 6.4963 -0.5189 1.4627 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3045 2.7128 -0.4071 16 6 -0.0069 3.2381 -2.6885 17 1 0.2240 2.5323 -3.4865 18 8 -1.4154 3.4771 -2.6568 19 6 0.7283 4.5554 -2.9441 20 6 0.1934 5.2001 -4.2265 21 6 0.9880 6.4761 -4.5165 22 8 2.3763 6.1563 -4.6280 23 6 2.9425 5.5938 -3.4426 24 6 2.2264 4.2823 -3.1094 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.8293 -0.0609 2.9499 31 1 2.2720 2.1231 -1.9978 32 1 -1.6937 4.0973 -1.9691 33 1 0.5699 5.2304 -2.1031 34 1 -0.8601 5.4485 -4.0974 35 1 0.3044 4.5049 -5.0586 36 1 0.6403 6.9164 -5.4510 37 1 0.8431 7.1874 -3.7034 38 1 2.8231 6.2935 -2.6153 39 1 4.0027 5.3983 -3.6034 40 1 2.6269 3.8742 -2.1814 41 1 2.3794 3.5680 -3.9185 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545170782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:01 Heat of formation + Delta-G solvation = -173.911335 kcal Electronic energy + Delta-G solvation = -22378.735916 eV Core-core repulsion = 19064.034823 eV Total energy + Delta-G solvation = -3314.701093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.47353 -39.92310 -37.91137 -36.71383 -34.96543 -34.07826 -32.80658 -31.90048 -29.58219 -28.24749 -25.30978 -24.42125 -24.37249 -22.10537 -21.43301 -20.99748 -19.41619 -17.97321 -17.67038 -17.29475 -16.93824 -16.83975 -16.13738 -16.01846 -15.82259 -15.28414 -15.03998 -14.62337 -14.35889 -14.14559 -14.04959 -13.50648 -13.28112 -13.17973 -13.03002 -12.86366 -12.70985 -12.45796 -12.25565 -12.13150 -12.08346 -11.72113 -11.62800 -11.57344 -11.24264 -11.04778 -10.65042 -10.56150 -10.18893 -9.64174 -8.16200 -6.33291 1.43651 1.45649 1.56535 1.72282 2.33450 2.57008 2.99105 3.13733 3.24533 3.58270 3.71626 3.87978 3.99463 4.14850 4.26848 4.32724 4.44695 4.46806 4.53142 4.64070 4.67794 4.72399 4.83243 4.83594 4.92372 5.03613 5.13622 5.17096 5.22914 5.32990 5.40281 5.53857 5.61320 5.77048 5.89526 6.15882 6.28121 6.52979 6.75006 6.94467 7.32975 7.52248 8.89329 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018390 B = 0.006082 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.192707 B = 4602.775153 C = 5900.498920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.123 4.123 3 C 0.275 3.725 4 H -0.001 1.001 5 C -0.543 4.543 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.258 1.258 11 H -0.286 1.286 12 H -0.281 1.281 13 N -0.699 5.699 14 C 0.472 3.528 15 O -0.586 6.586 16 C 0.109 3.891 17 H 0.133 0.867 18 O -0.545 6.545 19 C -0.107 4.107 20 C -0.134 4.134 21 C 0.056 3.944 22 O -0.399 6.399 23 C 0.065 3.935 24 C -0.165 4.165 25 H 0.047 0.953 26 H 0.025 0.975 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.264 0.736 31 H 0.404 0.596 32 H 0.388 0.612 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.106 0.894 40 H 0.074 0.926 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.680 9.241 -13.686 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.162 4.162 3 C 0.172 3.828 4 H 0.017 0.983 5 C -0.582 4.582 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.182 1.182 11 H -0.212 1.212 12 H -0.207 1.207 13 N -0.351 5.351 14 C 0.259 3.741 15 O -0.467 6.467 16 C 0.047 3.953 17 H 0.150 0.850 18 O -0.351 6.351 19 C -0.126 4.126 20 C -0.172 4.172 21 C -0.020 4.020 22 O -0.318 6.318 23 C -0.012 4.012 24 C -0.203 4.203 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.241 0.759 32 H 0.238 0.762 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.130 0.870 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.124 0.876 40 H 0.092 0.908 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.083 8.783 -13.507 16.404 hybrid contribution 0.893 -0.016 1.279 1.560 sum -2.189 8.767 -12.228 15.205 Atomic orbital electron populations 1.21663 0.97212 0.99341 0.99964 1.21807 0.93536 0.99406 1.01427 1.18384 0.93790 0.89012 0.81636 0.98329 1.21583 0.91282 1.38718 1.06568 0.90845 1.25742 1.03081 0.94455 0.95103 1.70048 1.36958 1.38491 1.09916 0.85374 0.79424 0.77764 0.78251 1.18202 1.21193 1.20667 1.46518 1.15431 1.55490 1.17646 1.22074 0.81954 0.78275 0.91815 1.90656 1.54689 1.59962 1.41440 1.21934 0.82468 0.97506 0.93422 0.84997 1.86506 1.20432 1.69338 1.58809 1.21726 0.95546 0.95527 0.99804 1.22090 1.00913 0.98044 0.96135 1.22753 0.80564 0.95558 1.03122 1.87906 1.24744 1.82273 1.36877 1.22560 0.98288 0.92884 0.87422 1.22446 0.94447 1.00004 1.03397 0.93407 0.95620 0.94066 0.93927 0.90937 0.92677 0.75946 0.76186 0.91149 0.89261 0.90484 0.86997 0.92866 0.93183 0.87640 0.90761 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.58 71.98 0.62 -4.97 16 2 C -0.12 -5.96 5.45 30.59 0.17 -5.80 16 3 C 0.28 13.68 2.25 44.24 0.10 13.78 16 4 H 0.00 -0.07 7.51 -2.39 -0.02 -0.09 16 5 C -0.54 -27.71 8.73 25.60 0.22 -27.48 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.85 5.29 84.65 0.45 1.30 16 8 N -0.92 -51.60 11.29 21.45 0.24 -51.36 16 9 Si 0.97 41.11 29.54 68.60 2.03 43.14 16 10 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 11 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 13 N -0.70 -27.23 4.06 -446.11 -1.81 -29.04 16 14 C 0.47 17.60 5.27 87.66 0.46 18.06 16 15 O -0.59 -26.88 13.86 15.64 0.22 -26.67 16 16 C 0.11 2.92 3.01 29.85 0.09 3.01 16 17 H 0.13 3.12 8.14 -2.38 -0.02 3.10 16 18 O -0.55 -14.74 12.27 -130.33 -1.60 -16.34 16 19 C -0.11 -2.36 2.01 -10.67 -0.02 -2.38 16 20 C -0.13 -2.35 5.17 30.68 0.16 -2.20 16 21 C 0.06 0.95 6.84 72.01 0.49 1.45 16 22 O -0.40 -8.65 10.77 -148.98 -1.60 -10.26 16 23 C 0.07 1.36 6.84 72.01 0.49 1.85 16 24 C -0.17 -3.66 4.37 30.68 0.13 -3.52 16 25 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.02 1.23 7.92 -2.39 -0.02 1.22 16 27 H 0.04 1.78 5.75 -2.39 -0.01 1.77 16 28 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.07 3.96 5.95 -2.38 -0.01 3.94 16 30 H 0.26 14.12 8.31 -92.72 -0.77 13.35 16 31 H 0.40 13.32 6.42 -92.70 -0.60 12.73 16 32 H 0.39 9.30 8.70 -74.05 -0.64 8.66 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 1.43 7.68 -2.39 -0.02 1.41 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.07 1.98 5.72 -2.39 -0.01 1.96 16 41 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -64.96 320.03 0.63 -64.32 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.20 Total: 33.09 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 3.36 Total: -6.90 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -1.57 Total: -80.40 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -2.99 Total: -53.26 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -64.96 0.63 -64.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545170782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.587 kcal (2) G-P(sol) polarization free energy of solvation -64.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds