Wall clock time and date at job start Mon Mar 30 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.46913 * 2 1 4 4 C 1.46502 * 119.99355 * 83.58225 * 3 2 1 5 5 C 1.50704 * 109.47108 * 90.00008 * 4 3 2 6 6 H 1.08006 * 119.99634 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99960 * 180.26728 * 5 4 3 8 8 N 1.31511 * 120.00305 * 359.73206 * 7 5 4 9 9 Si 1.86804 * 119.99786 * 179.72284 * 7 5 4 10 10 H 1.48500 * 109.47073 * 60.00471 * 9 7 5 11 11 H 1.48498 * 109.46731 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47272 * 300.00659 * 9 7 5 13 13 C 1.34775 * 120.00081 * 263.58261 * 3 2 1 14 14 O 1.21286 * 119.99394 * 185.12447 * 13 3 2 15 15 C 1.50692 * 120.00179 * 5.12851 * 13 3 2 16 16 H 1.09006 * 109.47133 * 152.95166 * 15 13 3 17 17 O 1.42898 * 109.47257 * 32.94618 * 15 13 3 18 18 C 1.42906 * 113.99868 * 149.99855 * 17 15 13 19 19 C 1.53004 * 109.46945 * 272.95012 * 15 13 3 20 20 H 1.09000 * 110.75204 * 69.15120 * 19 15 13 21 21 C 1.55307 * 110.84529 * 192.62196 * 19 15 13 22 22 C 1.55206 * 100.82466 * 152.17843 * 21 19 15 23 23 O 1.43649 * 105.26124 * 323.81603 * 22 21 19 24 24 C 1.43234 * 109.97091 * 24.28428 * 23 22 21 25 25 H 1.08997 * 109.46967 * 292.73810 * 1 2 3 26 26 H 1.08999 * 109.47037 * 52.73952 * 1 2 3 27 27 H 1.08997 * 109.46837 * 172.73749 * 1 2 3 28 28 H 1.09003 * 109.46908 * 240.00822 * 2 1 3 29 29 H 1.08994 * 109.47099 * 120.00549 * 2 1 3 30 30 H 1.08994 * 109.47284 * 330.00142 * 4 3 2 31 31 H 1.09002 * 109.46932 * 209.99753 * 4 3 2 32 32 H 0.96998 * 120.00312 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.47240 * 300.00406 * 18 17 15 34 34 H 1.08996 * 109.47088 * 60.00204 * 18 17 15 35 35 H 1.09000 * 109.47212 * 180.02562 * 18 17 15 36 36 H 1.08997 * 111.12420 * 270.23946 * 21 19 15 37 37 H 1.09001 * 111.12773 * 34.40375 * 21 19 15 38 38 H 1.09001 * 110.37415 * 204.79931 * 22 21 19 39 39 H 1.09000 * 110.21456 * 82.75245 * 22 21 19 40 40 H 1.08999 * 109.83120 * 238.77409 * 24 23 22 41 41 H 1.08997 * 109.90672 * 117.84581 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1287 2.1190 1.2609 5 6 3.4978 1.9014 1.8520 6 1 4.2141 1.2764 1.3395 7 6 3.8340 2.4961 3.0496 8 7 2.9620 3.2576 3.6734 9 14 5.5284 2.2201 3.7862 10 1 6.5646 2.7070 2.8404 11 1 5.6382 2.9633 5.0671 12 1 5.7290 0.7702 4.0367 13 6 2.3659 1.9732 -1.1599 14 8 2.8571 3.0821 -1.1513 15 6 2.1443 1.2572 -2.4672 16 1 2.0149 1.9889 -3.2648 17 8 0.9732 0.4438 -2.3723 18 6 0.2844 0.2698 -3.6122 19 6 3.3548 0.3741 -2.7766 20 1 3.4096 -0.4635 -2.0813 21 6 3.3111 -0.1287 -4.2454 22 6 4.8245 -0.3155 -4.5347 23 8 5.4783 0.7544 -3.8339 24 6 4.6591 1.1996 -2.7465 25 1 -0.3633 0.3972 0.9478 26 1 -0.3633 0.6222 -0.8179 27 1 -0.3633 -1.0194 -0.1299 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.3709 1.7621 1.9583 31 1 1.9785 3.1824 1.0740 32 1 3.1984 3.6757 4.5161 33 1 -0.0290 1.2417 -3.9933 34 1 0.9489 -0.2060 -4.3334 35 1 -0.5923 -0.3586 -3.4557 36 1 2.7738 -1.0740 -4.3212 37 1 2.8761 0.6223 -4.9050 38 1 5.0183 -0.2409 -5.6048 39 1 5.1642 -1.2794 -4.1557 40 1 4.4295 2.2584 -2.8658 41 1 5.1772 1.0380 -1.8012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596890296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:45 Heat of formation + Delta-G solvation = -120.308616 kcal Electronic energy + Delta-G solvation = -22745.361050 eV Core-core repulsion = 19432.984345 eV Total energy + Delta-G solvation = -3312.376704 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.34577 -38.60724 -37.31713 -35.23606 -32.81285 -32.56921 -30.05353 -29.92281 -27.94182 -26.69968 -25.14799 -22.99418 -22.90105 -22.22141 -20.93406 -18.60787 -17.43925 -16.64934 -16.28710 -16.22906 -16.10502 -14.98251 -14.87818 -14.60969 -14.35239 -13.99055 -13.85403 -13.30324 -13.18032 -12.96888 -12.39935 -12.31560 -11.95196 -11.78691 -11.66277 -11.41326 -11.33174 -11.15077 -11.03753 -10.93593 -10.77180 -10.57389 -10.41281 -10.09316 -9.65991 -9.59186 -9.44270 -8.85686 -8.40051 -7.60830 -6.01077 -4.05624 3.18499 3.34474 3.38594 3.42288 3.66868 3.87512 3.97488 4.34729 4.48333 4.66519 4.84619 4.99774 5.12548 5.16277 5.24826 5.26824 5.32120 5.35135 5.52675 5.55991 5.60908 5.65012 5.68706 5.80706 5.95157 6.02852 6.08383 6.18387 6.36108 6.48123 6.83657 6.95515 7.02290 7.13569 7.46109 7.58621 7.94839 8.26381 8.45491 8.89910 9.06374 9.59102 11.06980 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.006646 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.509037 B = 4211.861674 C = 5210.473761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.114 3.886 3 N -0.580 5.580 4 C 0.245 3.755 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.510 3.490 14 O -0.537 6.537 15 C 0.081 3.919 16 H 0.090 0.910 17 O -0.357 6.357 18 C 0.015 3.985 19 C -0.138 4.138 20 H 0.099 0.901 21 C -0.150 4.150 22 C 0.051 3.949 23 O -0.384 6.384 24 C 0.055 3.945 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.263 0.737 33 H 0.041 0.959 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.466 -10.150 -15.606 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.010 4.010 3 N -0.310 5.310 4 C 0.126 3.874 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.295 3.705 14 O -0.415 6.415 15 C 0.020 3.980 16 H 0.107 0.893 17 O -0.276 6.276 18 C -0.081 4.081 19 C -0.157 4.157 20 H 0.117 0.883 21 C -0.188 4.188 22 C -0.025 4.025 23 O -0.304 6.304 24 C -0.022 4.022 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.103 0.897 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.108 -9.446 -15.259 18.411 hybrid contribution 0.662 -0.242 0.338 0.782 sum -3.446 -9.689 -14.921 18.121 Atomic orbital electron populations 1.22149 0.96502 1.00945 1.01787 1.21473 0.94231 0.83407 1.01856 1.48216 1.61088 1.13709 1.08004 1.19289 0.96953 0.92638 0.78505 1.21371 0.99045 1.30230 1.05623 0.92545 1.24920 0.97319 0.94957 0.96848 1.69920 1.34776 1.31829 1.16924 0.86585 0.84502 0.78171 0.78342 1.20133 1.21187 1.20282 1.20009 0.79597 0.86182 0.84760 1.90727 1.44380 1.19771 1.86644 1.22449 0.85590 0.92240 0.97765 0.89263 1.88325 1.38763 1.70298 1.30165 1.22971 0.96995 1.00776 0.87358 1.23236 0.95210 0.99496 0.97787 0.88293 1.23464 0.97433 1.02276 0.95604 1.23384 0.90858 0.91104 0.97203 1.88412 1.44411 1.52499 1.45032 1.23225 0.89293 0.99211 0.90430 0.93381 0.91511 0.93071 0.90339 0.91306 0.94872 0.94126 0.92702 0.94043 0.93642 0.89580 0.89527 0.90331 0.89929 0.92262 0.89703 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.44 37.16 0.35 -1.97 16 2 C 0.11 1.95 5.58 -4.04 -0.02 1.92 16 3 N -0.58 -12.43 2.46 -175.05 -0.43 -12.86 16 4 C 0.25 6.48 5.14 -5.19 -0.03 6.45 16 5 C -0.52 -14.95 9.39 -34.44 -0.32 -15.27 16 6 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 9 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.51 10.57 6.13 -10.99 -0.07 10.50 16 14 O -0.54 -13.40 15.84 5.55 0.09 -13.31 16 15 C 0.08 1.21 1.85 -27.88 -0.05 1.16 16 16 H 0.09 1.26 7.62 -51.93 -0.40 0.86 16 17 O -0.36 -4.58 4.60 -35.23 -0.16 -4.74 16 18 C 0.02 0.14 10.68 101.05 1.08 1.22 16 19 C -0.14 -1.85 2.63 -88.67 -0.23 -2.09 16 20 H 0.10 1.34 6.79 -51.93 -0.35 0.99 16 21 C -0.15 -1.48 4.94 -24.34 -0.12 -1.60 16 22 C 0.05 0.55 7.78 38.33 0.30 0.85 16 23 O -0.38 -5.87 11.36 -35.23 -0.40 -6.27 16 24 C 0.05 0.88 6.62 37.88 0.25 1.13 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.07 1.00 6.29 -51.93 -0.33 0.68 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.18 4.30 -51.93 -0.22 0.96 16 29 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 30 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 31 H 0.04 1.21 7.50 -51.93 -0.39 0.82 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 34 H 0.05 0.34 5.46 -51.93 -0.28 0.06 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.68 7.48 -51.93 -0.39 0.29 16 37 H 0.08 0.72 7.70 -51.93 -0.40 0.32 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 1.50 6.95 -51.93 -0.36 1.14 16 41 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 323.36 15.07 4.87 4.87 Total: -1.00 -32.94 323.36 -5.74 -38.69 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.46 Total: -1.35 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 1.04 Total: 3.98 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.31 Total: -38.96 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.47 Total: -24.32 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.94 -5.74 -38.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596890296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.622 kcal (2) G-P(sol) polarization free energy of solvation -32.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds