Wall clock time and date at job start Mon Mar 30 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.46913 * 2 1 4 4 C 1.46502 * 119.99355 * 83.58225 * 3 2 1 5 5 C 1.50704 * 109.47108 * 90.00008 * 4 3 2 6 6 H 1.08006 * 119.99634 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99960 * 180.26728 * 5 4 3 8 8 N 1.31511 * 120.00305 * 359.73206 * 7 5 4 9 9 Si 1.86804 * 119.99786 * 179.72284 * 7 5 4 10 10 H 1.48500 * 109.47073 * 60.00471 * 9 7 5 11 11 H 1.48498 * 109.46731 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47272 * 300.00659 * 9 7 5 13 13 C 1.34775 * 120.00081 * 263.58261 * 3 2 1 14 14 O 1.21286 * 119.99394 * 185.12447 * 13 3 2 15 15 C 1.50692 * 120.00179 * 5.12851 * 13 3 2 16 16 H 1.09006 * 109.47133 * 152.95166 * 15 13 3 17 17 O 1.42898 * 109.47257 * 32.94618 * 15 13 3 18 18 C 1.42906 * 113.99868 * 149.99855 * 17 15 13 19 19 C 1.53004 * 109.46945 * 272.95012 * 15 13 3 20 20 H 1.09000 * 110.75204 * 69.15120 * 19 15 13 21 21 C 1.55307 * 110.84529 * 192.62196 * 19 15 13 22 22 C 1.55206 * 100.82466 * 152.17843 * 21 19 15 23 23 O 1.43649 * 105.26124 * 323.81603 * 22 21 19 24 24 C 1.43234 * 109.97091 * 24.28428 * 23 22 21 25 25 H 1.08997 * 109.46967 * 292.73810 * 1 2 3 26 26 H 1.08999 * 109.47037 * 52.73952 * 1 2 3 27 27 H 1.08997 * 109.46837 * 172.73749 * 1 2 3 28 28 H 1.09003 * 109.46908 * 240.00822 * 2 1 3 29 29 H 1.08994 * 109.47099 * 120.00549 * 2 1 3 30 30 H 1.08994 * 109.47284 * 330.00142 * 4 3 2 31 31 H 1.09002 * 109.46932 * 209.99753 * 4 3 2 32 32 H 0.96998 * 120.00312 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.47240 * 300.00406 * 18 17 15 34 34 H 1.08996 * 109.47088 * 60.00204 * 18 17 15 35 35 H 1.09000 * 109.47212 * 180.02562 * 18 17 15 36 36 H 1.08997 * 111.12420 * 270.23946 * 21 19 15 37 37 H 1.09001 * 111.12773 * 34.40375 * 21 19 15 38 38 H 1.09001 * 110.37415 * 204.79931 * 22 21 19 39 39 H 1.09000 * 110.21456 * 82.75245 * 22 21 19 40 40 H 1.08999 * 109.83120 * 238.77409 * 24 23 22 41 41 H 1.08997 * 109.90672 * 117.84581 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1287 2.1190 1.2609 5 6 3.4978 1.9014 1.8520 6 1 4.2141 1.2764 1.3395 7 6 3.8340 2.4961 3.0496 8 7 2.9620 3.2576 3.6734 9 14 5.5284 2.2201 3.7862 10 1 6.5646 2.7070 2.8404 11 1 5.6382 2.9633 5.0671 12 1 5.7290 0.7702 4.0367 13 6 2.3659 1.9732 -1.1599 14 8 2.8571 3.0821 -1.1513 15 6 2.1443 1.2572 -2.4672 16 1 2.0149 1.9889 -3.2648 17 8 0.9732 0.4438 -2.3723 18 6 0.2844 0.2698 -3.6122 19 6 3.3548 0.3741 -2.7766 20 1 3.4096 -0.4635 -2.0813 21 6 3.3111 -0.1287 -4.2454 22 6 4.8245 -0.3155 -4.5347 23 8 5.4783 0.7544 -3.8339 24 6 4.6591 1.1996 -2.7465 25 1 -0.3633 0.3972 0.9478 26 1 -0.3633 0.6222 -0.8179 27 1 -0.3633 -1.0194 -0.1299 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.3709 1.7621 1.9583 31 1 1.9785 3.1824 1.0740 32 1 3.1984 3.6757 4.5161 33 1 -0.0290 1.2417 -3.9933 34 1 0.9489 -0.2060 -4.3334 35 1 -0.5923 -0.3586 -3.4557 36 1 2.7738 -1.0740 -4.3212 37 1 2.8761 0.6223 -4.9050 38 1 5.0183 -0.2409 -5.6048 39 1 5.1642 -1.2794 -4.1557 40 1 4.4295 2.2584 -2.8658 41 1 5.1772 1.0380 -1.8012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596890296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:44 Heat of formation + Delta-G solvation = -143.490829 kcal Electronic energy + Delta-G solvation = -22746.366306 eV Core-core repulsion = 19432.984345 eV Total energy + Delta-G solvation = -3313.381960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.64173 -39.93454 -38.50753 -36.95897 -34.84811 -33.75819 -31.53094 -31.07718 -29.42771 -28.09573 -26.32038 -24.89405 -24.22867 -23.32607 -22.06513 -20.19920 -18.63989 -18.54873 -17.75845 -17.52221 -17.33972 -16.64661 -16.06642 -15.98786 -15.59226 -15.48150 -15.22570 -14.71357 -14.33128 -14.26103 -14.09605 -13.53389 -13.31841 -13.22350 -13.08040 -12.83501 -12.76298 -12.59895 -12.44200 -12.30810 -12.13367 -12.00391 -11.90464 -11.73426 -11.58554 -10.81007 -10.65127 -10.57097 -10.35505 -9.42930 -8.22869 -6.37505 1.34560 1.39048 1.46106 1.63952 2.26345 2.41951 2.64873 2.86684 3.06295 3.25354 3.63556 3.77503 3.89151 4.01448 4.17262 4.26228 4.35105 4.40070 4.59075 4.61736 4.68260 4.76366 4.78091 4.82155 4.87451 4.91239 4.97620 5.01858 5.09914 5.12259 5.18315 5.22426 5.58428 5.61008 5.84542 5.96926 6.03424 6.06846 6.68408 6.79114 7.24995 7.41283 8.84093 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.006646 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.509037 B = 4211.861674 C = 5210.473761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.111 3.889 3 N -0.586 5.586 4 C 0.261 3.739 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.964 3.036 10 H -0.279 1.279 11 H -0.276 1.276 12 H -0.260 1.260 13 C 0.499 3.501 14 O -0.592 6.592 15 C 0.103 3.897 16 H 0.100 0.900 17 O -0.366 6.366 18 C 0.007 3.993 19 C -0.133 4.133 20 H 0.101 0.899 21 C -0.134 4.134 22 C 0.040 3.960 23 O -0.406 6.406 24 C 0.058 3.942 25 H 0.026 0.974 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.056 0.944 30 H 0.022 0.978 31 H -0.005 1.005 32 H 0.267 0.733 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.809 -12.924 -17.653 22.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.011 4.011 3 N -0.316 5.316 4 C 0.140 3.860 5 C -0.579 4.579 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.788 3.212 10 H -0.204 1.204 11 H -0.201 1.201 12 H -0.185 1.185 13 C 0.286 3.714 14 O -0.474 6.474 15 C 0.042 3.958 16 H 0.118 0.882 17 O -0.285 6.285 18 C -0.088 4.088 19 C -0.152 4.152 20 H 0.119 0.881 21 C -0.171 4.171 22 C -0.035 4.035 23 O -0.326 6.326 24 C -0.019 4.019 25 H 0.045 0.955 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.125 0.875 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.013 0.987 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.126 0.874 36 H 0.139 0.861 37 H 0.110 0.890 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.482 -12.276 -17.335 21.709 hybrid contribution 0.719 0.612 0.910 1.311 sum -3.763 -11.665 -16.424 20.493 Atomic orbital electron populations 1.22063 0.94491 1.03068 1.00703 1.21747 0.95833 0.80863 1.02656 1.48250 1.61439 1.15191 1.06716 1.18724 0.95895 0.90732 0.80661 1.21637 0.99830 1.30391 1.06073 0.93022 1.25831 1.01443 0.94474 0.97266 1.70039 1.36837 1.32517 1.17367 0.85522 0.79115 0.79018 0.77508 1.20427 1.20116 1.18475 1.21114 0.77996 0.85820 0.86462 1.90684 1.46509 1.22433 1.87781 1.22012 0.87401 0.92770 0.93642 0.88247 1.88270 1.37922 1.69446 1.32833 1.23274 0.97792 1.01673 0.86073 1.23182 0.92663 0.98523 1.00840 0.88127 1.23480 0.97176 1.04084 0.92361 1.23738 0.91336 0.90266 0.98206 1.88392 1.45264 1.54072 1.44856 1.22983 0.90736 0.98561 0.89659 0.95503 0.91329 0.89444 0.87485 0.92515 0.96009 0.98673 0.92380 0.93853 0.91300 0.87405 0.86131 0.89029 0.87456 0.91088 0.92188 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.44 71.98 0.68 -3.42 16 2 C 0.11 3.71 5.58 86.38 0.48 4.19 16 3 N -0.59 -25.98 2.46 -826.14 -2.03 -28.01 16 4 C 0.26 14.62 5.14 85.63 0.44 15.06 16 5 C -0.54 -32.13 9.39 25.60 0.24 -31.89 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.52 5.46 84.65 0.46 0.99 16 8 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 9 Si 0.96 46.12 29.54 68.60 2.03 48.15 16 10 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 12 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 13 C 0.50 21.34 6.13 87.65 0.54 21.88 16 14 O -0.59 -31.42 15.84 -3.05 -0.05 -31.46 16 15 C 0.10 2.94 1.85 29.85 0.06 3.00 16 16 H 0.10 2.65 7.62 -2.38 -0.02 2.63 16 17 O -0.37 -8.25 4.60 -148.98 -0.69 -8.94 16 18 C 0.01 0.10 10.68 113.37 1.21 1.31 16 19 C -0.13 -3.32 2.63 -9.53 -0.03 -3.34 16 20 H 0.10 2.49 6.79 -2.39 -0.02 2.48 16 21 C -0.13 -2.07 4.94 32.14 0.16 -1.91 16 22 C 0.04 0.74 7.78 72.74 0.57 1.30 16 23 O -0.41 -12.07 11.36 -148.98 -1.69 -13.76 16 24 C 0.06 1.89 6.62 72.45 0.48 2.37 16 25 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 1.92 6.29 -2.39 -0.02 1.91 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.11 2.96 4.30 -2.39 -0.01 2.95 16 29 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 30 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 31 H 0.00 -0.31 7.50 -2.39 -0.02 -0.33 16 32 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 33 H 0.04 0.60 8.08 -2.39 -0.02 0.58 16 34 H 0.07 0.63 5.46 -2.39 -0.01 0.62 16 35 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.12 1.13 7.48 -2.39 -0.02 1.11 16 37 H 0.09 1.24 7.70 -2.39 -0.02 1.22 16 38 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 2.24 6.95 -2.39 -0.02 2.23 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -76.99 323.36 4.15 -72.84 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 1.01 Total: 8.74 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 5.29 Total: 9.53 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -1.75 Total: -85.10 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -2.43 Total: -54.16 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -76.99 4.15 -72.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596890296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.649 kcal (2) G-P(sol) polarization free energy of solvation -76.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds