Wall clock time and date at job start Mon Mar 30 2020 06:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46693 * 2 1 4 4 C 1.50695 * 109.46918 * 239.99618 * 2 1 3 5 5 H 1.08001 * 120.00119 * 275.10235 * 4 2 1 6 6 C 1.37877 * 120.00250 * 95.10692 * 4 2 1 7 7 N 1.31507 * 120.00706 * 184.90733 * 6 4 2 8 8 Si 1.86807 * 119.99617 * 4.90415 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.82552 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.82178 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.82491 * 8 6 4 12 12 C 1.50699 * 109.47040 * 119.99474 * 2 1 3 13 13 O 1.21283 * 120.00049 * 119.99996 * 12 2 1 14 14 N 1.34779 * 120.00366 * 300.00135 * 12 2 1 15 15 C 1.46497 * 119.99999 * 180.02562 * 14 12 2 16 16 C 1.53007 * 109.46754 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.46870 * 179.97438 * 16 15 14 18 18 O 1.42896 * 109.46772 * 179.97438 * 17 16 15 19 19 C 1.42903 * 113.99844 * 180.02562 * 18 17 16 20 20 H 1.09001 * 110.45675 * 330.70604 * 19 18 17 21 21 C 1.54507 * 110.51460 * 208.09945 * 19 18 17 22 22 C 1.54479 * 104.06440 * 241.35798 * 21 19 18 23 23 O 1.44429 * 104.80068 * 23.97333 * 22 21 19 24 24 C 1.44781 * 105.29925 * 319.45707 * 23 22 21 25 25 H 1.08997 * 109.46947 * 55.07979 * 1 2 3 26 26 H 1.08995 * 109.46913 * 295.07456 * 1 2 3 27 27 H 1.08998 * 109.46708 * 175.07670 * 1 2 3 28 28 H 0.96994 * 120.00587 * 179.97438 * 7 6 4 29 29 H 0.96999 * 119.99239 * 359.97438 * 14 12 2 30 30 H 1.09001 * 109.47003 * 299.99624 * 15 14 12 31 31 H 1.08998 * 109.47407 * 60.00328 * 15 14 12 32 32 H 1.08993 * 109.47354 * 299.99989 * 16 15 14 33 33 H 1.08998 * 109.46731 * 60.00116 * 16 15 14 34 34 H 1.08993 * 109.47380 * 300.00288 * 17 16 15 35 35 H 1.09000 * 109.46477 * 60.00217 * 17 16 15 36 36 H 1.09000 * 110.50788 * 359.97438 * 21 19 18 37 37 H 1.08997 * 110.51582 * 122.71035 * 21 19 18 38 38 H 1.09000 * 110.37831 * 142.80465 * 22 21 19 39 39 H 1.09006 * 110.36920 * 265.14592 * 22 21 19 40 40 H 1.09006 * 110.42361 * 281.77873 * 24 23 22 41 41 H 1.09000 * 110.49095 * 159.32492 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1339 -1.7857 -1.2295 6 6 2.3623 0.0121 -2.3573 7 7 2.7081 -0.6129 -3.4615 8 14 2.3181 1.8792 -2.3158 9 1 3.6038 2.3929 -1.7788 10 1 2.1126 2.4002 -3.6911 11 1 1.2029 2.3287 -1.4443 12 6 2.0324 -0.7103 1.2305 13 8 2.7296 -1.6964 1.1194 14 7 1.7068 -0.2498 2.4546 15 6 2.1956 -0.9400 3.6508 16 6 1.6860 -0.2183 4.9000 17 6 2.1959 -0.9396 6.1493 18 8 1.7205 -0.2652 7.3160 19 6 2.1426 -0.8611 8.5443 20 1 2.2886 -1.9337 8.4170 21 6 1.1131 -0.5838 9.6626 22 6 1.9090 0.2200 10.7147 23 8 2.9914 0.8258 9.9748 24 6 3.4408 -0.1945 9.0511 25 1 -0.3633 0.5883 -0.8426 26 1 -0.3633 0.4355 0.9308 27 1 -0.3633 -1.0239 -0.0882 28 1 2.9399 -0.1046 -4.2544 29 1 1.1494 0.5391 2.5435 30 1 1.8326 -1.9678 3.6510 31 1 3.2856 -0.9395 3.6507 32 1 2.0492 0.8093 4.8996 33 1 0.5960 -0.2184 4.9003 34 1 1.8324 -1.9671 6.1496 35 1 3.2859 -0.9398 6.1491 36 1 0.2823 0.0082 9.2786 37 1 0.7519 -1.5192 10.0898 38 1 1.2784 0.9884 11.1619 39 1 2.3009 -0.4456 11.4838 40 1 4.0663 -0.9243 9.5654 41 1 3.9854 0.2554 8.2210 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597371449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:51 Heat of formation + Delta-G solvation = -141.171279 kcal Electronic energy + Delta-G solvation = -20412.904088 eV Core-core repulsion = 17099.622711 eV Total energy + Delta-G solvation = -3313.281377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.01392 -38.92607 -37.57474 -35.01714 -33.62936 -32.25748 -31.43140 -30.62754 -28.99522 -25.62398 -25.23075 -23.30381 -22.36292 -21.79146 -21.29576 -19.21043 -17.61997 -17.03087 -16.86345 -16.41846 -15.92276 -15.80918 -15.53178 -15.08521 -14.56100 -14.20431 -13.85403 -13.68402 -13.15572 -12.92091 -12.53173 -12.48955 -12.28010 -12.04208 -11.92389 -11.76878 -11.56516 -11.41314 -11.17295 -11.12969 -11.03502 -10.73989 -10.39477 -10.24684 -9.80138 -9.73272 -9.15873 -8.69128 -8.54518 -8.48753 -6.05278 -4.04482 3.11211 3.26058 3.32294 3.34982 3.53004 3.65673 3.91510 4.12299 4.39611 4.39680 4.56366 4.65418 4.76108 4.84286 4.90113 5.05411 5.07688 5.22707 5.25821 5.29526 5.30206 5.39069 5.45163 5.55941 5.64870 5.88356 6.03069 6.15474 6.17154 6.29770 6.41047 6.54548 6.84702 6.87639 7.01632 7.19712 7.57333 8.17170 8.56188 9.10211 9.17443 9.54406 11.08071 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.042009 B = 0.002699 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.357677 B =10370.370031 C =10493.278932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.005 4.005 3 H 0.054 0.946 4 C -0.494 4.494 5 H 0.085 0.915 6 C 0.070 3.930 7 N -0.896 5.896 8 Si 0.872 3.128 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.264 1.264 12 C 0.519 3.481 13 O -0.531 6.531 14 N -0.749 5.749 15 C 0.123 3.877 16 C -0.129 4.129 17 C 0.063 3.937 18 O -0.372 6.372 19 C 0.056 3.944 20 H 0.078 0.922 21 C -0.155 4.155 22 C 0.044 3.956 23 O -0.370 6.370 24 C 0.023 3.977 25 H 0.054 0.946 26 H 0.026 0.974 27 H 0.051 0.949 28 H 0.264 0.736 29 H 0.395 0.605 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.671 1.838 27.081 27.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.027 4.027 3 H 0.072 0.928 4 C -0.533 4.533 5 H 0.103 0.897 6 C -0.131 4.131 7 N -0.533 5.533 8 Si 0.699 3.301 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.189 1.189 12 C 0.307 3.693 13 O -0.405 6.405 14 N -0.405 5.405 15 C -0.002 4.002 16 C -0.167 4.167 17 C -0.014 4.014 18 O -0.291 6.291 19 C -0.003 4.003 20 H 0.096 0.904 21 C -0.192 4.192 22 C -0.032 4.032 23 O -0.289 6.289 24 C -0.055 4.055 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.229 0.771 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.111 1.493 26.784 27.005 hybrid contribution -0.104 0.913 -0.028 0.920 sum -3.215 2.407 26.755 27.055 Atomic orbital electron populations 1.21947 0.96779 1.01350 0.99060 1.19348 0.94074 0.96966 0.92303 0.92789 1.20747 1.42931 0.96174 0.93400 0.89653 1.25038 0.94684 0.98048 0.95351 1.69878 1.46098 1.35695 1.01672 0.86952 0.79001 0.86692 0.77444 1.20131 1.21271 1.18912 1.21778 0.78998 0.84565 0.83966 1.90579 1.36988 1.26346 1.86567 1.46309 1.55756 1.32787 1.05613 1.21021 0.99185 0.96252 0.83700 1.21683 1.02292 1.00653 0.92043 1.22482 0.98352 0.95692 0.84879 1.87980 1.74165 1.54156 1.12819 1.23498 0.94014 0.97133 0.85642 0.90389 1.23084 0.99429 1.01763 0.94957 1.23427 0.88594 0.97183 0.94045 1.89229 1.50978 1.36202 1.52481 1.24057 0.96244 0.91527 0.93628 0.92714 0.95477 0.92936 0.92552 0.77136 0.91967 0.91958 0.90422 0.90465 0.92750 0.92852 0.89048 0.89574 0.88767 0.92155 0.91412 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.12 37.16 0.34 -2.32 16 2 C -0.01 -0.12 2.30 -92.92 -0.21 -0.33 16 3 H 0.05 1.22 5.29 -51.93 -0.27 0.95 16 4 C -0.49 -14.30 8.36 -34.44 -0.29 -14.58 16 5 H 0.09 2.80 7.61 -52.49 -0.40 2.40 16 6 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 7 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 8 Si 0.87 21.04 26.99 -169.99 -4.59 16.45 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.26 -5.86 6.82 56.52 0.39 -5.48 16 12 C 0.52 11.51 7.15 -10.99 -0.08 11.43 16 13 O -0.53 -13.98 15.77 5.55 0.09 -13.89 16 14 N -0.75 -12.29 5.42 -60.29 -0.33 -12.62 16 15 C 0.12 1.68 5.67 -4.04 -0.02 1.66 16 16 C -0.13 -1.34 5.70 -26.73 -0.15 -1.49 16 17 C 0.06 0.58 5.79 37.16 0.22 0.80 16 18 O -0.37 -3.83 9.98 -35.23 -0.35 -4.18 16 19 C 0.06 0.44 3.59 -25.16 -0.09 0.35 16 20 H 0.08 0.48 7.84 -51.93 -0.41 0.07 16 21 C -0.15 -1.02 6.90 -25.16 -0.17 -1.20 16 22 C 0.04 0.30 7.63 37.93 0.29 0.59 16 23 O -0.37 -3.80 11.66 -35.23 -0.41 -4.21 16 24 C 0.02 0.18 7.40 37.93 0.28 0.47 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 26 H 0.03 0.43 7.43 -51.93 -0.39 0.04 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.40 5.38 7.83 -40.82 -0.32 5.06 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.46 8.11 -51.93 -0.42 0.03 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.68 8.00 -51.93 -0.42 0.27 16 37 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.84 8.09 -51.93 -0.42 0.42 16 LS Contribution 337.94 15.07 5.09 5.09 Total: -1.00 -35.06 337.94 -6.56 -41.62 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.84 Total: 1.38 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 0.01 Total: -2.68 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.45 Total: -39.59 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.67 Total: -22.27 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.59 Total: 16.45 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.06 -6.56 -41.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597371449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.550 kcal (2) G-P(sol) polarization free energy of solvation -35.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds