Wall clock time and date at job start Mon Mar 30 2020 06:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46693 * 2 1 4 4 C 1.50695 * 109.46918 * 239.99618 * 2 1 3 5 5 H 1.08001 * 120.00119 * 275.10235 * 4 2 1 6 6 C 1.37877 * 120.00250 * 95.10692 * 4 2 1 7 7 N 1.31507 * 120.00706 * 184.90733 * 6 4 2 8 8 Si 1.86807 * 119.99617 * 4.90415 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.82552 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.82178 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.82491 * 8 6 4 12 12 C 1.50699 * 109.47040 * 119.99474 * 2 1 3 13 13 O 1.21283 * 120.00049 * 119.99996 * 12 2 1 14 14 N 1.34779 * 120.00366 * 300.00135 * 12 2 1 15 15 C 1.46497 * 119.99999 * 180.02562 * 14 12 2 16 16 C 1.53007 * 109.46754 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.46870 * 179.97438 * 16 15 14 18 18 O 1.42896 * 109.46772 * 179.97438 * 17 16 15 19 19 C 1.42903 * 113.99844 * 180.02562 * 18 17 16 20 20 H 1.09001 * 110.45675 * 330.70604 * 19 18 17 21 21 C 1.54507 * 110.51460 * 208.09945 * 19 18 17 22 22 C 1.54479 * 104.06440 * 241.35798 * 21 19 18 23 23 O 1.44429 * 104.80068 * 23.97333 * 22 21 19 24 24 C 1.44781 * 105.29925 * 319.45707 * 23 22 21 25 25 H 1.08997 * 109.46947 * 55.07979 * 1 2 3 26 26 H 1.08995 * 109.46913 * 295.07456 * 1 2 3 27 27 H 1.08998 * 109.46708 * 175.07670 * 1 2 3 28 28 H 0.96994 * 120.00587 * 179.97438 * 7 6 4 29 29 H 0.96999 * 119.99239 * 359.97438 * 14 12 2 30 30 H 1.09001 * 109.47003 * 299.99624 * 15 14 12 31 31 H 1.08998 * 109.47407 * 60.00328 * 15 14 12 32 32 H 1.08993 * 109.47354 * 299.99989 * 16 15 14 33 33 H 1.08998 * 109.46731 * 60.00116 * 16 15 14 34 34 H 1.08993 * 109.47380 * 300.00288 * 17 16 15 35 35 H 1.09000 * 109.46477 * 60.00217 * 17 16 15 36 36 H 1.09000 * 110.50788 * 359.97438 * 21 19 18 37 37 H 1.08997 * 110.51582 * 122.71035 * 21 19 18 38 38 H 1.09000 * 110.37831 * 142.80465 * 22 21 19 39 39 H 1.09006 * 110.36920 * 265.14592 * 22 21 19 40 40 H 1.09006 * 110.42361 * 281.77873 * 24 23 22 41 41 H 1.09000 * 110.49095 * 159.32492 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1339 -1.7857 -1.2295 6 6 2.3623 0.0121 -2.3573 7 7 2.7081 -0.6129 -3.4615 8 14 2.3181 1.8792 -2.3158 9 1 3.6038 2.3929 -1.7788 10 1 2.1126 2.4002 -3.6911 11 1 1.2029 2.3287 -1.4443 12 6 2.0324 -0.7103 1.2305 13 8 2.7296 -1.6964 1.1194 14 7 1.7068 -0.2498 2.4546 15 6 2.1956 -0.9400 3.6508 16 6 1.6860 -0.2183 4.9000 17 6 2.1959 -0.9396 6.1493 18 8 1.7205 -0.2652 7.3160 19 6 2.1426 -0.8611 8.5443 20 1 2.2886 -1.9337 8.4170 21 6 1.1131 -0.5838 9.6626 22 6 1.9090 0.2200 10.7147 23 8 2.9914 0.8258 9.9748 24 6 3.4408 -0.1945 9.0511 25 1 -0.3633 0.5883 -0.8426 26 1 -0.3633 0.4355 0.9308 27 1 -0.3633 -1.0239 -0.0882 28 1 2.9399 -0.1046 -4.2544 29 1 1.1494 0.5391 2.5435 30 1 1.8326 -1.9678 3.6510 31 1 3.2856 -0.9395 3.6507 32 1 2.0492 0.8093 4.8996 33 1 0.5960 -0.2184 4.9003 34 1 1.8324 -1.9671 6.1496 35 1 3.2859 -0.9398 6.1491 36 1 0.2823 0.0082 9.2786 37 1 0.7519 -1.5192 10.0898 38 1 1.2784 0.9884 11.1619 39 1 2.3009 -0.4456 11.4838 40 1 4.0663 -0.9243 9.5654 41 1 3.9854 0.2554 8.2210 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597371449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:50 Heat of formation + Delta-G solvation = -168.644659 kcal Electronic energy + Delta-G solvation = -20414.095423 eV Core-core repulsion = 17099.622711 eV Total energy + Delta-G solvation = -3314.472712 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.69650 -40.52293 -38.32034 -36.31682 -35.62128 -33.64524 -32.77727 -31.67559 -29.58665 -27.25726 -26.69093 -24.15351 -23.63916 -22.72644 -22.02076 -20.88835 -19.13022 -18.29112 -17.71767 -17.37720 -17.18576 -16.82665 -16.60529 -16.10846 -15.92028 -15.67312 -15.04171 -14.73018 -14.61914 -14.32799 -13.96424 -13.69476 -13.23209 -13.12034 -12.97173 -12.88026 -12.64435 -12.54045 -12.52077 -12.24982 -12.13055 -11.99151 -11.74734 -11.69373 -11.24300 -11.00563 -10.75180 -10.44262 -10.36835 -9.98385 -8.26707 -6.33253 1.36673 1.39877 1.50004 1.90313 2.20198 2.36271 2.75322 2.99762 3.11038 3.57767 3.84344 3.97529 3.97948 4.06424 4.13439 4.22163 4.28889 4.42299 4.45229 4.47057 4.50798 4.59520 4.67743 4.74340 4.75237 4.80905 4.86341 4.91424 5.05578 5.10880 5.12723 5.18951 5.51469 5.58934 5.60149 5.74435 6.25714 6.26651 6.67459 6.86388 7.28261 7.53253 8.91372 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.042009 B = 0.002699 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.357677 B =10370.370031 C =10493.278932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.011 4.011 3 H 0.072 0.928 4 C -0.507 4.507 5 H 0.021 0.979 6 C 0.003 3.997 7 N -0.953 5.953 8 Si 0.948 3.052 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.222 1.222 12 C 0.517 3.483 13 O -0.586 6.586 14 N -0.725 5.725 15 C 0.123 3.877 16 C -0.115 4.115 17 C 0.063 3.937 18 O -0.391 6.391 19 C 0.049 3.951 20 H 0.097 0.903 21 C -0.152 4.152 22 C 0.039 3.961 23 O -0.404 6.404 24 C 0.019 3.981 25 H 0.056 0.944 26 H 0.076 0.924 27 H 0.037 0.963 28 H 0.267 0.733 29 H 0.414 0.586 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.997 3.973 29.684 30.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.032 4.032 3 H 0.090 0.910 4 C -0.545 4.545 5 H 0.040 0.960 6 C -0.193 4.193 7 N -0.593 5.593 8 Si 0.770 3.230 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.144 1.144 12 C 0.306 3.694 13 O -0.464 6.464 14 N -0.380 5.380 15 C -0.001 4.001 16 C -0.153 4.153 17 C -0.014 4.014 18 O -0.310 6.310 19 C -0.009 4.009 20 H 0.115 0.885 21 C -0.189 4.189 22 C -0.037 4.037 23 O -0.323 6.323 24 C -0.058 4.058 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.251 0.749 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.128 0.872 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.485 3.656 29.460 30.023 hybrid contribution 0.323 0.132 -0.760 0.837 sum -4.162 3.788 28.700 29.247 Atomic orbital electron populations 1.21830 0.93708 1.01122 1.01830 1.19349 0.96368 0.96997 0.90509 0.90988 1.20898 1.43433 0.93788 0.96396 0.96013 1.26112 0.94011 1.04755 0.94420 1.70071 1.47979 1.38424 1.02802 0.85746 0.80577 0.78364 0.78349 1.19506 1.21140 1.14443 1.21510 0.78551 0.83888 0.85490 1.90565 1.39623 1.28755 1.87506 1.45974 1.54534 1.32785 1.04661 1.21142 0.98856 0.96326 0.83807 1.21522 1.02658 1.00360 0.90748 1.22454 0.98697 0.95908 0.84333 1.87941 1.74500 1.54960 1.13637 1.23717 0.94192 0.98037 0.84987 0.88465 1.23111 0.98661 1.02665 0.94476 1.23628 0.88077 0.97725 0.94277 1.89186 1.52116 1.37741 1.53272 1.24164 0.96687 0.91539 0.93429 0.92470 0.90475 0.94423 0.92418 0.74949 0.92410 0.92696 0.90035 0.89590 0.91738 0.92337 0.90166 0.87222 0.88200 0.90311 0.89484 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 9.12 71.98 0.66 -4.06 16 2 C -0.01 -0.48 2.30 -12.29 -0.03 -0.51 16 3 H 0.07 3.02 5.29 -2.39 -0.01 3.00 16 4 C -0.51 -30.30 8.36 25.60 0.21 -30.09 16 5 H 0.02 1.52 7.61 -2.91 -0.02 1.50 16 6 C 0.00 0.19 5.47 84.66 0.46 0.66 16 7 N -0.95 -61.42 13.96 21.45 0.30 -61.12 16 8 Si 0.95 42.58 26.99 68.60 1.85 44.44 16 9 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.22 -8.42 6.82 99.48 0.68 -7.74 16 12 C 0.52 22.66 7.15 87.66 0.63 23.29 16 13 O -0.59 -31.82 15.77 -3.04 -0.05 -31.87 16 14 N -0.73 -22.03 5.42 -463.05 -2.51 -24.54 16 15 C 0.12 3.13 5.67 86.38 0.49 3.62 16 16 C -0.12 -2.07 5.70 30.60 0.17 -1.90 16 17 C 0.06 1.02 5.79 71.98 0.42 1.44 16 18 O -0.39 -7.19 9.98 -148.98 -1.49 -8.68 16 19 C 0.05 0.66 3.59 31.61 0.11 0.77 16 20 H 0.10 0.92 7.84 -2.39 -0.02 0.90 16 21 C -0.15 -1.66 6.90 31.61 0.22 -1.44 16 22 C 0.04 0.46 7.63 72.48 0.55 1.01 16 23 O -0.40 -7.80 11.66 -148.98 -1.74 -9.54 16 24 C 0.02 0.27 7.40 72.48 0.54 0.81 16 25 H 0.06 2.09 8.14 -2.39 -0.02 2.08 16 26 H 0.08 2.09 7.43 -2.39 -0.02 2.07 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 28 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 29 H 0.41 9.55 7.83 -92.71 -0.73 8.83 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 0.92 8.11 -2.39 -0.02 0.90 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 1.06 8.00 -2.39 -0.02 1.04 16 37 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 40 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.09 1.43 8.09 -2.39 -0.02 1.41 16 Total: -1.00 -81.43 337.94 1.06 -80.38 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.25 Total: 17.32 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 4.43 Total: -6.39 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -2.21 Total: -85.66 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -3.27 Total: -50.08 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.85 Total: 44.44 kcal Total: -81.43 1.06 -80.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597371449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.269 kcal (2) G-P(sol) polarization free energy of solvation -81.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds