Wall clock time and date at job start Mon Mar 30 2020 06:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47395 * 2 1 4 4 C 1.50699 * 109.46741 * 240.00109 * 2 1 3 5 5 H 1.08005 * 119.99441 * 239.99961 * 4 2 1 6 6 C 1.37875 * 120.00347 * 59.99942 * 4 2 1 7 7 N 1.31519 * 119.99842 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00212 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47141 * 90.00064 * 8 6 4 10 10 H 1.48498 * 109.47219 * 210.00138 * 8 6 4 11 11 H 1.48505 * 109.46819 * 330.00059 * 8 6 4 12 12 C 1.50701 * 109.47125 * 120.00142 * 2 1 3 13 13 O 1.21277 * 120.00301 * 119.99990 * 12 2 1 14 14 N 1.34780 * 119.99819 * 299.99534 * 12 2 1 15 15 C 1.46496 * 119.99656 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.47145 * 180.02562 * 15 14 12 17 17 O 1.42908 * 109.47236 * 64.99593 * 16 15 14 18 18 C 1.42894 * 113.99889 * 180.02562 * 17 16 15 19 19 H 1.08998 * 109.48284 * 54.98108 * 18 17 16 20 20 C 1.53098 * 109.47720 * 175.00187 * 18 17 16 21 21 C 1.53177 * 109.21356 * 177.55786 * 20 18 17 22 22 C 1.53180 * 109.03525 * 303.11207 * 21 20 18 23 23 C 1.53097 * 109.21119 * 56.88485 * 22 21 20 24 24 O 1.42898 * 109.41405 * 302.42599 * 23 22 21 25 25 H 1.09001 * 109.46693 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46666 * 300.00196 * 1 2 3 27 27 H 1.08993 * 109.47075 * 59.99950 * 1 2 3 28 28 H 0.96991 * 119.99831 * 179.97438 * 7 6 4 29 29 H 0.97000 * 120.00352 * 0.02562 * 14 12 2 30 30 H 1.09001 * 109.47724 * 60.00101 * 15 14 12 31 31 H 1.09011 * 109.47172 * 299.99870 * 15 14 12 32 32 H 1.08998 * 109.46839 * 305.00230 * 16 15 14 33 33 H 1.09002 * 109.47515 * 184.99484 * 16 15 14 34 34 H 1.09002 * 109.52244 * 297.49725 * 20 18 17 35 35 H 1.09004 * 109.52508 * 57.62254 * 20 18 17 36 36 H 1.09005 * 109.54330 * 62.92184 * 21 20 18 37 37 H 1.09005 * 109.54560 * 183.18386 * 21 20 18 38 38 H 1.09002 * 109.46996 * 296.98297 * 22 21 20 39 39 H 1.09005 * 109.58122 * 176.85328 * 22 21 20 40 40 H 1.09007 * 109.47760 * 182.43925 * 23 22 21 41 41 H 1.09003 * 109.48798 * 62.41590 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.3447 -2.1615 -4.4124 10 1 2.4871 -0.1403 -5.1121 11 1 3.6308 -1.7566 -3.7120 12 6 2.0324 -0.7104 1.2305 13 8 2.7297 -1.6965 1.1192 14 7 1.7069 -0.2499 2.4546 15 6 2.1957 -0.9402 3.6507 16 6 1.6852 -0.2194 4.9000 17 8 0.2610 -0.3212 4.9601 18 6 -0.3203 0.3231 6.0954 19 1 -0.0013 1.3649 6.1251 20 6 -1.8465 0.2592 5.9928 21 6 -2.4628 0.8971 7.2417 22 6 -1.9318 0.1764 8.4846 23 6 -0.4023 0.2434 8.4910 24 8 0.1036 -0.3395 7.2884 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.7095 1.1618 -3.4843 29 1 1.1489 0.5386 2.5436 30 1 3.2857 -0.9399 3.6506 31 1 1.8326 -1.9681 3.6509 32 1 1.9728 0.8310 4.8563 33 1 2.1200 -0.6787 5.7877 34 1 -2.1750 0.8021 5.1065 35 1 -2.1635 -0.7812 5.9210 36 1 -2.1874 1.9508 7.2866 37 1 -3.5481 0.8040 7.2009 38 1 -2.2506 -0.8658 8.4643 39 1 -2.3213 0.6590 9.3811 40 1 -0.0180 -0.3054 9.3508 41 1 -0.0842 1.2842 8.5523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597679534.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:40 Heat of formation + Delta-G solvation = -173.178062 kcal Electronic energy + Delta-G solvation = -21096.348184 eV Core-core repulsion = 17781.678888 eV Total energy + Delta-G solvation = -3314.669296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.78672 -40.40973 -38.21502 -35.79349 -35.52313 -34.65986 -32.70192 -31.48964 -29.77550 -27.18867 -25.76091 -24.74353 -24.21384 -23.14154 -21.23546 -21.13260 -18.57734 -18.36313 -17.84269 -17.74476 -16.99859 -16.70968 -16.33099 -15.95150 -15.65085 -15.27939 -15.11268 -14.65549 -14.58299 -14.28136 -14.01618 -13.68129 -13.51574 -13.29398 -12.96575 -12.74898 -12.60237 -12.54628 -12.26455 -12.19532 -12.14678 -11.99954 -11.85616 -11.50265 -11.03148 -10.88656 -10.59143 -10.46447 -10.28873 -9.96004 -8.14227 -6.24612 1.41241 1.41788 1.53987 1.94368 2.25671 2.38508 2.57202 2.95218 3.15085 3.80235 3.81199 3.90852 4.01185 4.05931 4.12707 4.16504 4.39032 4.45683 4.50970 4.60473 4.68423 4.75575 4.79179 4.85538 4.87514 4.97338 5.02983 5.04248 5.11064 5.12366 5.34865 5.50715 5.59101 5.75900 5.94440 6.02557 6.22352 6.27848 6.75252 6.87531 7.40778 7.55804 8.91810 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038944 B = 0.003290 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.812373 B = 8507.921914 C = 9030.075945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.024 3.976 3 H 0.043 0.957 4 C -0.530 4.530 5 H 0.048 0.952 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.273 1.273 11 H -0.279 1.279 12 C 0.519 3.481 13 O -0.590 6.590 14 N -0.721 5.721 15 C 0.121 3.879 16 C 0.064 3.936 17 O -0.385 6.385 18 C 0.251 3.749 19 H 0.070 0.930 20 C -0.143 4.143 21 C -0.117 4.117 22 C -0.158 4.158 23 C 0.064 3.936 24 O -0.430 6.430 25 H 0.019 0.981 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.265 0.735 29 H 0.410 0.590 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.709 5.010 24.194 25.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.003 3.997 3 H 0.061 0.939 4 C -0.569 4.569 5 H 0.066 0.934 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.782 3.218 9 H -0.200 1.200 10 H -0.198 1.198 11 H -0.204 1.204 12 C 0.308 3.692 13 O -0.470 6.470 14 N -0.375 5.375 15 C -0.003 4.003 16 C -0.013 4.013 17 O -0.305 6.305 18 C 0.156 3.844 19 H 0.087 0.913 20 C -0.181 4.181 21 C -0.154 4.154 22 C -0.195 4.195 23 C -0.012 4.012 24 O -0.352 6.352 25 H 0.038 0.962 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.246 0.754 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.278 4.173 23.858 25.020 hybrid contribution 0.109 -0.023 -0.837 0.845 sum -6.169 4.150 23.020 24.191 Atomic orbital electron populations 1.21539 0.95152 0.99230 1.01622 1.18806 0.95245 0.96006 0.89630 0.93908 1.21306 1.31615 1.12733 0.91212 0.93408 1.25609 0.95200 0.95758 1.01430 1.69949 1.37273 1.23536 1.24320 0.85580 0.78623 0.78534 0.79054 1.20022 1.19799 1.20372 1.21575 0.78221 0.83705 0.85688 1.90498 1.40231 1.28702 1.87603 1.45955 1.54210 1.32545 1.04756 1.21378 0.99083 0.96441 0.83350 1.22705 0.80770 1.00901 0.96879 1.88084 1.21260 1.79197 1.41976 1.23153 0.92385 0.91733 0.77172 0.91303 1.22065 0.92781 1.02675 1.00603 1.21606 1.01335 1.00016 0.92441 1.22244 0.96028 1.01759 0.99499 1.22763 0.93786 0.99106 0.85556 1.87774 1.73387 1.58471 1.15605 0.96174 0.93150 0.90971 0.92569 0.75428 0.89962 0.92999 0.90535 0.89822 0.89833 0.91855 0.90268 0.89751 0.91860 0.88284 0.87484 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.87 71.98 0.64 -4.94 16 2 C 0.02 1.27 2.64 -12.28 -0.03 1.23 16 3 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 4 C -0.53 -31.65 8.37 25.60 0.21 -31.43 16 5 H 0.05 3.05 6.75 -2.91 -0.02 3.03 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -52.03 11.32 21.45 0.24 -51.78 16 8 Si 0.96 45.82 29.54 68.60 2.03 47.84 16 9 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 12 C 0.52 25.00 7.15 87.66 0.63 25.63 16 13 O -0.59 -32.90 15.46 -3.02 -0.05 -32.95 16 14 N -0.72 -26.14 5.40 -463.05 -2.50 -28.64 16 15 C 0.12 3.72 6.06 86.38 0.52 4.24 16 16 C 0.06 1.47 5.94 71.98 0.43 1.90 16 17 O -0.39 -10.09 10.21 -126.21 -1.29 -11.38 16 18 C 0.25 5.10 3.20 72.01 0.23 5.33 16 19 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 20 C -0.14 -2.55 5.78 30.69 0.18 -2.38 16 21 C -0.12 -1.35 6.03 30.71 0.19 -1.16 16 22 C -0.16 -1.67 6.13 30.69 0.19 -1.49 16 23 C 0.06 0.80 6.84 72.01 0.49 1.29 16 24 O -0.43 -8.92 10.03 -126.21 -1.27 -10.18 16 25 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.05 1.96 7.56 -2.39 -0.02 1.94 16 27 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 28 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 29 H 0.41 12.83 7.89 -92.71 -0.73 12.10 16 30 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.76 7.75 -2.39 -0.02 1.74 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.33 8.14 -2.38 -0.02 1.32 16 36 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 40 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -72.14 333.92 1.57 -70.58 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.28 Total: 16.76 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 4.12 Total: -0.24 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -2.26 Total: -80.42 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -2.60 Total: -54.51 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -72.14 1.57 -70.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597679534.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.602 kcal (2) G-P(sol) polarization free energy of solvation -72.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds