Wall clock time and date at job start Mon Mar 30 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00029 * 2 1 4 4 C 1.53004 * 109.47090 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47149 * 175.35262 * 4 3 2 6 6 H 1.09006 * 109.67641 * 60.31142 * 5 4 3 7 7 C 1.53297 * 109.68377 * 299.75920 * 5 4 3 8 8 O 1.42962 * 109.22391 * 187.97504 * 7 5 4 9 9 C 1.42962 * 114.16676 * 62.57598 * 8 7 5 10 10 C 1.53294 * 109.22314 * 297.42234 * 9 8 7 11 11 N 1.47149 * 108.38751 * 52.30233 * 10 9 8 12 12 C 1.34774 * 120.98284 * 129.44030 * 11 10 9 13 13 O 1.21285 * 119.99769 * 185.86996 * 12 11 10 14 14 C 1.50697 * 120.00087 * 5.87192 * 12 11 10 15 15 H 1.09004 * 109.47230 * 44.79273 * 14 12 11 16 16 C 1.52993 * 109.47336 * 284.79069 * 14 12 11 17 17 C 1.50702 * 109.47169 * 164.78952 * 14 12 11 18 18 H 1.07993 * 119.99903 * 0.02562 * 17 14 12 19 19 C 1.37880 * 119.99903 * 180.02562 * 17 14 12 20 20 N 1.31516 * 120.00034 * 359.97438 * 19 17 14 21 21 Si 1.86803 * 119.99744 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47083 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47087 * 120.00136 * 21 19 17 24 24 H 1.48500 * 109.47170 * 239.99852 * 21 19 17 25 25 H 1.09006 * 109.46927 * 299.99209 * 1 2 3 26 26 H 1.08998 * 109.47365 * 59.99708 * 1 2 3 27 27 H 1.08999 * 109.47452 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47061 * 300.00406 * 3 2 1 29 29 H 1.08994 * 109.47153 * 60.00293 * 3 2 1 30 30 H 1.09000 * 109.46754 * 295.35355 * 4 3 2 31 31 H 1.08996 * 109.47289 * 55.35410 * 4 3 2 32 32 H 1.09007 * 109.50908 * 307.90090 * 7 5 4 33 33 H 1.08999 * 109.51438 * 68.04527 * 7 5 4 34 34 H 1.08994 * 109.51424 * 177.49274 * 9 8 7 35 35 H 1.09009 * 109.54892 * 57.37165 * 9 8 7 36 36 H 1.08996 * 109.68409 * 292.57348 * 10 9 8 37 37 H 1.09007 * 109.70941 * 172.04091 * 10 9 8 38 38 H 1.08999 * 109.47535 * 304.44162 * 16 14 12 39 39 H 1.09004 * 109.47189 * 64.44335 * 16 14 12 40 40 H 1.09001 * 109.47792 * 184.44121 * 16 14 12 41 41 H 0.96998 * 119.99342 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1574 2.5776 -0.1175 6 1 3.8482 3.1898 0.7297 7 6 3.7042 3.2374 -1.4249 8 8 4.4314 4.4534 -1.6153 9 6 5.8430 4.2753 -1.7553 10 6 6.4057 3.6687 -0.4648 11 7 5.6244 2.4652 -0.1385 12 6 6.2345 1.2944 0.1325 13 8 5.5744 0.2899 0.2944 14 6 7.7368 1.2335 0.2346 15 1 8.0952 2.0753 0.8270 16 6 8.3463 1.3001 -1.1671 17 6 8.1433 -0.0570 0.8983 18 1 7.3892 -0.7626 1.2142 19 6 9.4779 -0.3368 1.1022 20 7 10.3962 0.5223 0.7170 21 14 9.9817 -1.9368 1.9242 22 1 8.7684 -2.7247 2.2592 23 1 10.8410 -2.7191 0.9997 24 1 10.7364 -1.6381 3.1678 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.6885 1.8464 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 3.8632 0.7170 0.9278 31 1 3.8512 0.5737 -0.8463 32 1 3.8976 2.5629 -2.2592 33 1 2.6375 3.4555 -1.3720 34 1 6.3151 5.2402 -1.9402 35 1 6.0450 3.6051 -2.5910 36 1 6.3230 4.3913 0.3470 37 1 7.4517 3.3990 -0.6110 38 1 7.9278 0.5046 -1.7836 39 1 8.1183 2.2665 -1.6170 40 1 9.4272 1.1768 -1.0997 41 1 11.3351 0.3255 0.8608 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597687400.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:43 Heat of formation + Delta-G solvation = -132.417502 kcal Electronic energy + Delta-G solvation = -22311.481589 eV Core-core repulsion = 18998.579804 eV Total energy + Delta-G solvation = -3312.901785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.66545 -39.26064 -38.84741 -36.15603 -35.76603 -34.57341 -32.19344 -30.55111 -28.44224 -27.29190 -27.06039 -25.63889 -24.32797 -23.02893 -22.38296 -19.97037 -18.35941 -17.94992 -17.72042 -17.38811 -16.88487 -16.67551 -16.45042 -16.29666 -15.93233 -15.76291 -15.47821 -14.80049 -14.73551 -14.24390 -14.03442 -13.49995 -13.32654 -13.18641 -12.95273 -12.68916 -12.64070 -12.43416 -12.29349 -12.22583 -12.09154 -11.99473 -11.93787 -11.69745 -11.19074 -11.05953 -10.60033 -10.54120 -9.79553 -9.38404 -8.16706 -6.26724 1.37597 1.40004 1.52987 1.88276 1.97583 2.43615 2.71672 2.95844 3.12706 3.63764 3.87613 3.96548 4.01004 4.13258 4.19969 4.26275 4.34364 4.38592 4.43333 4.53410 4.54968 4.62233 4.65170 4.70443 4.83464 4.84334 4.85283 4.97224 5.04091 5.15716 5.27244 5.43723 5.66766 5.72959 5.93457 6.07201 6.18114 6.28978 6.53656 6.80646 7.38566 7.49216 8.88975 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.005968 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.551338 B = 4690.667219 C = 6118.293906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.425 6.425 3 C 0.059 3.941 4 C -0.095 4.095 5 C 0.115 3.885 6 H 0.088 0.912 7 C 0.056 3.944 8 O -0.384 6.384 9 C 0.051 3.949 10 C 0.064 3.936 11 N -0.623 5.623 12 C 0.520 3.480 13 O -0.567 6.567 14 C 0.028 3.972 15 H 0.039 0.961 16 C -0.122 4.122 17 C -0.526 4.526 18 H 0.044 0.956 19 C 0.022 3.978 20 N -0.908 5.908 21 Si 0.953 3.047 22 H -0.282 1.282 23 H -0.274 1.274 24 H -0.273 1.273 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.017 0.983 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.160 9.812 -4.893 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.345 6.345 3 C -0.017 4.017 4 C -0.133 4.133 5 C 0.011 3.989 6 H 0.106 0.894 7 C -0.021 4.021 8 O -0.302 6.302 9 C -0.026 4.026 10 C -0.058 4.058 11 N -0.359 5.359 12 C 0.311 3.689 13 O -0.445 6.445 14 C 0.007 3.993 15 H 0.057 0.943 16 C -0.180 4.180 17 C -0.564 4.564 18 H 0.062 0.938 19 C -0.177 4.177 20 N -0.548 5.548 21 Si 0.779 3.221 22 H -0.207 1.207 23 H -0.199 1.199 24 H -0.198 1.198 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.150 0.850 34 H 0.156 0.844 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.120 0.880 38 H 0.036 0.964 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.286 9.321 -4.815 17.724 hybrid contribution 0.569 -1.198 0.645 1.475 sum -13.716 8.123 -4.171 16.478 Atomic orbital electron populations 1.22948 0.79277 1.03696 1.01184 1.87901 1.21791 1.29141 1.95623 1.22764 0.92988 0.84457 1.01507 1.21696 0.92926 0.95132 1.03577 1.21917 0.80074 0.96815 1.00062 0.89386 1.23176 0.97984 0.86375 0.94587 1.87917 1.19063 1.30169 1.93081 1.23120 0.81191 1.03248 0.95067 1.22765 0.97518 0.86404 0.99151 1.48362 1.06371 1.10256 1.70914 1.21641 0.91884 0.81877 0.73449 1.90593 1.66469 1.36410 1.51066 1.18795 0.86310 0.97935 0.96258 0.94289 1.21663 1.03521 0.98266 0.94538 1.21276 0.92232 1.04141 1.38801 0.93763 1.25544 0.96255 0.99863 0.96067 1.69931 1.00847 1.36462 1.47545 0.85579 0.77767 0.80093 0.78654 1.20744 1.19949 1.19801 0.92924 0.92474 0.89061 0.91007 0.91868 0.92075 0.93161 0.93231 0.85031 0.84438 0.92853 0.89717 0.88012 0.96392 0.92623 0.90734 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 11.01 113.37 1.25 1.72 16 2 O -0.42 -12.63 10.70 -148.98 -1.59 -14.22 16 3 C 0.06 1.52 5.73 71.98 0.41 1.93 16 4 C -0.10 -3.27 3.54 30.60 0.11 -3.16 16 5 C 0.11 3.40 3.21 44.97 0.14 3.55 16 6 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 7 C 0.06 1.32 5.69 72.08 0.41 1.73 16 8 O -0.38 -9.19 10.74 -148.98 -1.60 -10.79 16 9 C 0.05 1.14 6.98 72.08 0.50 1.64 16 10 C 0.06 1.80 6.02 86.35 0.52 2.32 16 11 N -0.62 -22.27 3.02 -793.53 -2.40 -24.67 16 12 C 0.52 24.25 6.85 87.66 0.60 24.85 16 13 O -0.57 -30.03 11.14 -3.05 -0.03 -30.07 16 14 C 0.03 1.42 1.78 -12.29 -0.02 1.40 16 15 H 0.04 2.01 7.47 -2.38 -0.02 1.99 16 16 C -0.12 -5.61 8.69 71.98 0.63 -4.99 16 17 C -0.53 -30.70 8.36 25.60 0.21 -30.48 16 18 H 0.04 2.79 6.86 -2.91 -0.02 2.77 16 19 C 0.02 1.23 5.29 84.66 0.45 1.68 16 20 N -0.91 -50.63 11.30 21.45 0.24 -50.38 16 21 Si 0.95 45.28 29.54 68.60 2.03 47.31 16 22 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 25 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.40 6.40 -2.38 -0.02 1.39 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 30 H 0.06 2.61 6.35 -2.39 -0.02 2.60 16 31 H 0.05 2.03 7.21 -2.39 -0.02 2.01 16 32 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.13 2.23 6.81 -2.39 -0.02 2.21 16 34 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.10 3.11 4.20 -2.38 -0.01 3.10 16 38 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.06 2.06 5.84 -2.38 -0.01 2.05 16 40 H 0.07 3.77 5.97 -2.39 -0.01 3.76 16 41 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -70.61 317.74 2.87 -67.74 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 1.02 Total: 12.90 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 5.21 Total: 2.18 kcal Atomic # 7 Polarization: -72.90 SS G_CDS: -2.15 Total: -75.05 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -3.23 Total: -55.07 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -70.61 2.87 -67.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597687400.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.678 kcal (2) G-P(sol) polarization free energy of solvation -70.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds