Wall clock time and date at job start Mon Mar 30 2020 06:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47192 * 2 1 4 4 C 1.42897 * 114.00084 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46881 * 179.97438 * 4 3 2 6 6 O 1.42895 * 109.47036 * 65.00230 * 5 4 3 7 7 C 1.42901 * 113.99948 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47182 * 30.00056 * 7 6 5 9 9 C 1.52993 * 109.47145 * 269.99781 * 7 6 5 10 10 C 1.50699 * 109.47226 * 149.99634 * 7 6 5 11 11 O 1.21287 * 119.99914 * 5.00478 * 10 7 6 12 12 N 1.34778 * 120.00357 * 184.99852 * 10 7 6 13 13 C 1.47067 * 136.05579 * 359.63324 * 12 10 7 14 14 C 1.53233 * 88.08399 * 207.20131 * 13 12 10 15 15 C 1.50702 * 114.32732 * 220.46710 * 14 13 12 16 16 H 1.07997 * 119.99457 * 93.75818 * 15 14 13 17 17 C 1.37878 * 120.00102 * 273.76620 * 15 14 13 18 18 N 1.31506 * 120.00095 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99772 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47327 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47051 * 119.99553 * 19 17 15 22 22 H 1.48496 * 109.47189 * 239.99328 * 19 17 15 23 23 C 1.47063 * 136.06179 * 179.97438 * 12 10 7 24 24 H 1.08996 * 109.47374 * 59.99860 * 1 2 3 25 25 H 1.08999 * 109.47230 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46835 * 299.99717 * 1 2 3 27 27 H 1.08997 * 109.47241 * 240.00464 * 2 1 3 28 28 H 1.08996 * 109.47374 * 120.00140 * 2 1 3 29 29 H 1.08992 * 109.47198 * 60.00172 * 4 3 2 30 30 H 1.08997 * 109.46749 * 299.99934 * 4 3 2 31 31 H 1.09001 * 109.47002 * 184.99708 * 5 4 3 32 32 H 1.08993 * 109.46955 * 305.00145 * 5 4 3 33 33 H 1.09001 * 109.47579 * 180.02562 * 9 7 6 34 34 H 1.09008 * 109.47407 * 300.00003 * 9 7 6 35 35 H 1.09004 * 109.47291 * 60.00034 * 9 7 6 36 36 H 1.09009 * 113.46425 * 321.93946 * 13 12 10 37 37 H 1.08999 * 113.46529 * 92.37072 * 13 12 10 38 38 H 1.09006 * 114.01528 * 87.71517 * 14 13 12 39 39 H 0.96996 * 120.00438 * 180.02562 * 18 17 15 40 40 H 1.08995 * 113.47043 * 267.63108 * 23 12 10 41 41 H 1.09001 * 113.46258 * 38.06695 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8253 2.9385 -0.0012 6 8 3.3985 3.5458 1.2198 7 6 3.7202 4.9344 1.3218 8 1 3.7323 5.3786 0.3265 9 6 5.0981 5.0925 1.9676 10 6 2.6856 5.6289 2.1693 11 8 1.8152 4.9833 2.7141 12 7 2.7274 6.9673 2.3220 13 6 3.5914 8.0603 1.8512 14 6 3.1975 8.8440 3.1077 15 6 2.9537 10.3124 2.8725 16 1 1.9533 10.6689 2.6759 17 6 4.0076 11.2007 2.9081 18 7 5.2256 10.7666 3.1478 19 14 3.7053 13.0207 2.6158 20 1 2.2588 13.2491 2.3695 21 1 4.1320 13.7916 3.8112 22 1 4.4850 13.4685 1.4340 23 6 1.9326 7.9769 3.0375 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8332 0.9768 -0.8908 30 1 3.8339 0.9765 0.8892 31 1 4.9081 3.0256 -0.0911 32 1 3.3491 3.4412 -0.8429 33 1 5.3434 6.1517 2.0459 34 1 5.0861 4.6483 2.9630 35 1 5.8466 4.5902 1.3546 36 1 4.6484 7.7954 1.8201 37 1 3.2443 8.5203 0.9260 38 1 3.8301 8.6430 3.9724 39 1 5.9670 11.3914 3.1733 40 1 1.1395 8.4144 2.4313 41 1 1.5817 7.6412 4.0133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598035910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:51 Heat of formation + Delta-G solvation = -115.973249 kcal Electronic energy + Delta-G solvation = -20957.882510 eV Core-core repulsion = 17645.693801 eV Total energy + Delta-G solvation = -3312.188709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.32797 -39.69074 -38.87504 -37.97135 -34.66485 -33.43566 -32.28799 -30.61643 -29.77672 -27.22586 -26.67120 -24.96400 -23.68881 -23.45540 -22.10158 -19.86013 -18.81418 -18.31090 -17.84804 -17.74255 -17.09255 -16.72198 -16.50231 -16.14198 -15.98078 -15.44835 -15.02800 -14.32780 -14.32426 -14.10519 -13.81405 -13.64203 -13.45909 -13.20581 -13.17415 -13.01918 -12.74452 -12.64647 -12.57213 -12.28413 -12.18327 -12.12452 -11.86351 -11.34510 -11.04841 -10.92414 -10.56636 -10.54793 -10.40924 -9.57544 -8.15412 -6.25997 1.47327 1.51177 1.55915 1.61303 1.71436 2.46977 2.75504 2.80165 3.15038 3.45803 3.84945 3.98010 4.09203 4.14322 4.20788 4.24413 4.31442 4.38432 4.45147 4.47220 4.49598 4.52350 4.59913 4.70160 4.72996 4.74642 4.83930 4.87166 4.93129 5.01227 5.06088 5.23905 5.24189 5.61245 5.83112 6.08161 6.24690 6.33211 6.82329 6.86687 7.14691 7.43856 8.94725 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038649 B = 0.003258 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.303547 B = 8592.334969 C = 8957.588222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.417 6.417 4 C 0.062 3.938 5 C 0.050 3.950 6 O -0.381 6.381 7 C 0.086 3.914 8 H 0.104 0.896 9 C -0.163 4.163 10 C 0.525 3.475 11 O -0.588 6.588 12 N -0.642 5.642 13 C 0.111 3.889 14 C 0.025 3.975 15 C -0.527 4.527 16 H 0.065 0.935 17 C 0.023 3.977 18 N -0.916 5.916 19 Si 0.957 3.043 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.279 1.279 23 C 0.104 3.896 24 H 0.058 0.942 25 H 0.095 0.905 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.041 0.959 39 H 0.265 0.735 40 H 0.084 0.916 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.836 -16.229 -9.866 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.337 6.337 4 C -0.014 4.014 5 C -0.026 4.026 6 O -0.300 6.300 7 C 0.025 3.975 8 H 0.122 0.878 9 C -0.220 4.220 10 C 0.315 3.685 11 O -0.469 6.469 12 N -0.377 5.377 13 C -0.011 4.011 14 C 0.006 3.994 15 C -0.565 4.565 16 H 0.083 0.917 17 C -0.177 4.177 18 N -0.554 5.554 19 Si 0.783 3.217 20 H -0.190 1.190 21 H -0.211 1.211 22 H -0.204 1.204 23 C -0.019 4.019 24 H 0.077 0.923 25 H 0.114 0.886 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.338 -16.707 -9.457 19.201 hybrid contribution 0.116 0.921 0.026 0.929 sum 0.454 -15.785 -9.431 18.394 Atomic orbital electron populations 1.21779 0.93725 1.03298 1.02146 1.22644 0.95980 0.82931 1.01009 1.87988 1.22055 1.28074 1.95605 1.22683 0.81376 0.95086 1.02234 1.22979 1.00334 0.93081 0.86156 1.88067 1.81510 1.20822 1.39628 1.21759 0.93110 0.83281 0.99359 0.87791 1.22223 0.94335 1.03669 1.01816 1.20727 0.85782 0.80394 0.81601 1.90630 1.39922 1.65266 1.51087 1.49939 1.33254 1.03624 1.50861 1.23451 0.94314 0.82872 1.00496 1.20176 0.91762 0.93371 0.94139 1.21212 0.94448 0.91624 1.49224 0.91665 1.25721 0.94886 1.02938 0.94195 1.70043 0.99869 1.36371 1.49127 0.85512 0.78549 0.80015 0.77601 1.19021 1.21057 1.20436 1.23279 0.97351 0.85682 0.95551 0.92295 0.88649 0.93733 0.91292 0.93102 0.88430 0.92501 0.88332 0.92265 0.90727 0.92767 0.88140 0.91003 0.89831 0.94107 0.92593 0.89775 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 10.28 71.98 0.74 -2.05 16 2 C 0.05 0.96 6.66 71.98 0.48 1.44 16 3 O -0.42 -11.24 10.31 -144.34 -1.49 -12.73 16 4 C 0.06 1.26 6.32 71.98 0.45 1.71 16 5 C 0.05 1.12 6.13 71.98 0.44 1.56 16 6 O -0.38 -12.62 9.49 -125.59 -1.19 -13.81 16 7 C 0.09 2.75 2.98 29.85 0.09 2.84 16 8 H 0.10 2.81 7.79 -2.39 -0.02 2.79 16 9 C -0.16 -4.45 9.45 71.98 0.68 -3.77 16 10 C 0.52 22.13 7.43 87.66 0.65 22.78 16 11 O -0.59 -29.85 17.28 15.94 0.28 -29.58 16 12 N -0.64 -26.62 3.67 -858.91 -3.15 -29.77 16 13 C 0.11 4.48 7.66 83.08 0.64 5.12 16 14 C 0.02 1.16 3.77 -11.29 -0.04 1.12 16 15 C -0.53 -26.41 8.82 25.60 0.23 -26.18 16 16 H 0.07 3.19 7.81 -2.91 -0.02 3.17 16 17 C 0.02 1.17 5.46 84.66 0.46 1.63 16 18 N -0.92 -48.92 13.26 21.45 0.28 -48.64 16 19 Si 0.96 40.24 29.54 68.60 2.03 42.27 16 20 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 23 C 0.10 4.44 8.19 83.18 0.68 5.12 16 24 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.10 1.48 7.87 -2.39 -0.02 1.46 16 32 H 0.06 1.28 8.08 -2.39 -0.02 1.26 16 33 H 0.07 2.16 5.71 -2.39 -0.01 2.15 16 34 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.10 1.98 7.87 -2.39 -0.02 1.96 16 36 H 0.07 2.78 6.07 -2.38 -0.01 2.77 16 37 H 0.08 3.25 8.10 -2.39 -0.02 3.23 16 38 H 0.04 2.13 8.11 -2.38 -0.02 2.11 16 39 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 40 H 0.08 3.41 8.10 -2.39 -0.02 3.39 16 41 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -68.15 345.10 3.25 -64.91 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.99 Total: 16.02 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 5.50 Total: 11.33 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -2.87 Total: -78.41 kcal Atomic # 8 Polarization: -53.71 SS G_CDS: -2.40 Total: -56.12 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -68.15 3.25 -64.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598035910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.065 kcal (2) G-P(sol) polarization free energy of solvation -68.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds