Wall clock time and date at job start Mon Mar 30 2020 06:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.46782 * 2 1 4 4 C 1.42901 * 113.99652 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47256 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.50603 * 54.90238 * 5 4 3 7 7 C 1.53292 * 109.51326 * 174.99739 * 5 4 3 8 8 N 1.47157 * 108.38550 * 172.27974 * 7 5 4 9 9 C 1.34773 * 120.98191 * 129.44564 * 8 7 5 10 10 O 1.21285 * 120.00093 * 183.48002 * 9 8 7 11 11 C 1.50697 * 120.00228 * 3.46886 * 9 8 7 12 12 H 1.09000 * 109.47224 * 308.15593 * 11 9 8 13 13 C 1.53000 * 109.46672 * 68.15149 * 11 9 8 14 14 C 1.50692 * 109.47359 * 188.15177 * 11 9 8 15 15 H 1.07998 * 120.00396 * 0.02562 * 14 11 9 16 16 C 1.37880 * 120.00224 * 180.02562 * 14 11 9 17 17 N 1.31510 * 120.00170 * 179.97438 * 16 14 11 18 18 Si 1.86797 * 119.99901 * 0.02562 * 16 14 11 19 19 H 1.48500 * 109.47595 * 89.99448 * 18 16 14 20 20 H 1.48502 * 109.47191 * 209.99760 * 18 16 14 21 21 H 1.48506 * 109.46973 * 329.99199 * 18 16 14 22 22 C 1.47148 * 118.03293 * 309.72200 * 8 7 5 23 23 C 1.52883 * 108.61091 * 50.22477 * 22 8 7 24 24 O 1.42953 * 109.29490 * 307.93326 * 23 22 8 25 25 H 1.09003 * 109.47083 * 60.00470 * 1 2 3 26 26 H 1.09001 * 109.47219 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47168 * 300.00144 * 1 2 3 28 28 H 1.09000 * 109.47168 * 239.99856 * 2 1 3 29 29 H 1.08996 * 109.46711 * 119.99545 * 2 1 3 30 30 H 1.09010 * 109.47232 * 59.99997 * 4 3 2 31 31 H 1.08993 * 109.47270 * 299.99961 * 4 3 2 32 32 H 1.08996 * 109.68358 * 52.56047 * 7 5 4 33 33 H 1.09001 * 109.71676 * 292.01958 * 7 5 4 34 34 H 1.08998 * 109.47385 * 306.56473 * 13 11 9 35 35 H 1.09003 * 109.47230 * 66.56847 * 13 11 9 36 36 H 1.09007 * 109.47106 * 186.56440 * 13 11 9 37 37 H 0.97006 * 120.00319 * 180.02562 * 17 16 14 38 38 H 1.09006 * 109.68045 * 170.00661 * 22 8 7 39 39 H 1.08998 * 109.68388 * 290.55265 * 22 8 7 40 40 H 1.09000 * 109.58045 * 187.92006 * 23 22 8 41 41 H 1.08995 * 109.36394 * 67.81818 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8254 2.9384 -0.0001 6 1 3.3481 3.4429 0.8400 7 6 5.3480 3.0620 0.1265 8 7 5.7165 4.4740 -0.0632 9 6 6.5132 5.1078 0.8199 10 8 6.7544 6.2882 0.6806 11 6 7.1041 4.3499 1.9807 12 1 6.3115 3.8232 2.5120 13 6 8.1287 3.3394 1.4612 14 6 7.7818 5.3155 2.9183 15 1 7.7840 6.3724 2.6962 16 6 8.3991 4.8498 4.0599 17 7 8.9909 5.6924 4.8779 18 14 8.3959 3.0217 4.4437 19 1 9.5927 2.3861 3.8362 20 1 8.4243 2.8248 5.9154 21 1 7.1681 2.4007 3.8849 22 6 5.1842 5.1752 -1.2423 23 6 3.6738 4.9471 -1.3050 24 8 3.4039 3.5457 -1.2238 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8340 0.9764 -0.8892 31 1 3.8332 0.9768 0.8907 32 1 5.8307 2.4511 -0.6363 33 1 5.6629 2.7303 1.1159 34 1 7.6675 2.7149 0.6961 35 1 8.9784 3.8710 1.0327 36 1 8.4703 2.7123 2.2848 37 1 9.4255 5.3647 5.6808 38 1 5.3900 6.2424 -1.1587 39 1 5.6500 4.7807 -2.1453 40 1 3.2838 5.3392 -2.2443 41 1 3.1960 5.4590 -0.4697 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600409720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:30 Heat of formation + Delta-G solvation = -118.569636 kcal Electronic energy + Delta-G solvation = -21917.616381 eV Core-core repulsion = 18605.315084 eV Total energy + Delta-G solvation = -3312.301297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.12017 -38.43404 -37.57147 -34.42101 -33.93273 -32.72189 -31.38519 -30.79787 -28.27161 -25.71016 -25.16157 -23.89631 -22.97485 -22.11746 -20.91583 -18.71035 -17.08208 -17.01433 -16.77815 -16.10458 -15.81917 -15.53315 -15.29423 -14.99376 -14.55666 -14.36676 -13.67587 -13.50402 -13.34606 -13.04296 -12.76482 -12.58088 -12.43682 -11.98287 -11.71016 -11.66844 -11.55657 -11.47452 -11.10624 -11.01961 -10.69028 -10.56079 -10.34221 -9.99867 -9.77190 -9.68216 -9.13515 -8.76934 -8.61395 -8.22602 -6.08618 -4.09129 3.15604 3.20043 3.24509 3.32762 3.41170 3.52931 3.70240 4.33886 4.77549 4.80047 4.82540 4.94342 5.02465 5.05149 5.14640 5.19176 5.22036 5.24885 5.35706 5.43499 5.49571 5.50903 5.61045 5.68093 5.79032 5.87905 5.90553 6.00411 6.07656 6.24933 6.38198 6.57879 6.82741 7.00457 7.11222 7.13758 7.48337 7.88564 8.49490 8.96278 9.10342 9.49818 11.04406 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018734 B = 0.005376 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.210274 B = 5207.171611 C = 6309.640544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.381 6.381 4 C 0.073 3.927 5 C 0.078 3.922 6 H 0.073 0.927 7 C 0.085 3.915 8 N -0.629 5.629 9 C 0.534 3.466 10 O -0.526 6.526 11 C -0.003 4.003 12 H 0.049 0.951 13 C -0.148 4.148 14 C -0.507 4.507 15 H 0.093 0.907 16 C 0.072 3.928 17 N -0.894 5.894 18 Si 0.883 3.117 19 H -0.277 1.277 20 H -0.294 1.294 21 H -0.268 1.268 22 C 0.075 3.925 23 C 0.050 3.950 24 O -0.371 6.371 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.036 0.964 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.265 0.735 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.303 -12.649 -11.619 21.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.004 4.004 5 C 0.019 3.981 6 H 0.091 0.909 7 C -0.039 4.039 8 N -0.367 5.367 9 C 0.324 3.676 10 O -0.399 6.399 11 C -0.024 4.024 12 H 0.067 0.933 13 C -0.205 4.205 14 C -0.545 4.545 15 H 0.111 0.889 16 C -0.130 4.130 17 N -0.532 5.532 18 Si 0.713 3.287 19 H -0.204 1.204 20 H -0.222 1.222 21 H -0.194 1.194 22 C -0.048 4.048 23 C -0.027 4.027 24 O -0.290 6.290 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.121 0.879 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.244 -11.882 -11.646 21.265 hybrid contribution 0.425 -1.165 0.484 1.331 sum -12.819 -13.047 -11.162 21.428 Atomic orbital electron populations 1.21734 0.93791 1.02065 1.03225 1.22461 0.95647 0.83927 1.00013 1.87947 1.20470 1.26144 1.95417 1.22417 0.82057 0.94726 1.01230 1.22474 0.93898 0.93111 0.88606 0.90872 1.22274 0.93932 0.83691 1.04041 1.48320 1.51543 1.11289 1.25543 1.21361 0.76199 0.87582 0.82410 1.90579 1.59076 1.16153 1.74134 1.19298 0.95569 0.95612 0.91936 0.93349 1.22195 1.00448 0.98399 0.99499 1.20926 1.33986 0.95524 1.04056 0.88920 1.24966 0.94872 0.97333 0.95834 1.69877 1.36019 1.34339 1.12999 0.86930 0.78713 0.86396 0.76621 1.20418 1.22182 1.19367 1.22088 0.93955 1.00085 0.88641 1.22899 0.94892 0.82262 1.02697 1.87956 1.81935 1.21965 1.37127 0.91821 0.91230 0.91833 0.93426 0.93410 0.92198 0.91367 0.90849 0.87888 0.94474 0.92031 0.93331 0.92501 0.88197 0.91435 0.87909 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.79 16 2 C 0.06 0.51 6.66 37.16 0.25 0.76 16 3 O -0.38 -4.71 10.31 -39.65 -0.41 -5.12 16 4 C 0.07 0.81 5.61 37.16 0.21 1.02 16 5 C 0.08 1.04 3.06 -26.58 -0.08 0.96 16 6 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 7 C 0.08 1.19 4.40 -3.53 -0.02 1.18 16 8 N -0.63 -10.89 3.03 -172.53 -0.52 -11.41 16 9 C 0.53 11.85 6.99 -10.99 -0.08 11.78 16 10 O -0.53 -13.63 14.96 5.55 0.08 -13.54 16 11 C 0.00 -0.06 1.38 -92.93 -0.13 -0.19 16 12 H 0.05 1.08 6.12 -51.93 -0.32 0.76 16 13 C -0.15 -3.03 8.22 37.16 0.31 -2.72 16 14 C -0.51 -14.61 8.95 -34.44 -0.31 -14.92 16 15 H 0.09 3.05 7.03 -52.49 -0.37 2.68 16 16 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 17 N -0.89 -27.50 13.96 55.43 0.77 -26.73 16 18 Si 0.88 20.98 24.30 -169.99 -4.13 16.85 16 19 H -0.28 -6.38 6.93 56.52 0.39 -5.99 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.27 -5.82 6.53 56.52 0.37 -5.45 16 22 C 0.08 1.10 6.62 -3.75 -0.02 1.08 16 23 C 0.05 0.64 6.97 37.10 0.26 0.90 16 24 O -0.37 -5.20 10.36 -39.65 -0.41 -5.61 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 33 H 0.10 1.48 5.27 -51.93 -0.27 1.20 16 34 H 0.04 0.61 6.12 -51.93 -0.32 0.29 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.05 1.01 3.47 -51.92 -0.18 0.83 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.10 1.58 7.07 -51.93 -0.37 1.22 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 321.25 15.07 4.84 4.84 Total: -1.00 -34.11 321.25 -5.60 -39.71 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.50 Total: 0.02 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 0.67 Total: 1.00 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.25 Total: -38.14 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.74 Total: -24.28 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.13 Total: 16.85 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.11 -5.60 -39.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600409720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.857 kcal (2) G-P(sol) polarization free energy of solvation -34.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds