Wall clock time and date at job start Mon Mar 30 2020 05:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.54009 * 2 1 4 4 C 1.53044 * 109.49930 * 239.90697 * 2 1 3 5 5 N 1.46847 * 109.51335 * 180.88542 * 4 2 1 6 6 C 1.46830 * 111.21086 * 61.74856 * 5 4 2 7 7 C 1.53038 * 109.51757 * 298.25173 * 6 5 4 8 8 C 1.52999 * 109.50331 * 299.23944 * 7 6 5 9 9 C 1.53005 * 109.46621 * 299.80014 * 8 7 6 10 10 O 1.42902 * 109.46940 * 180.02562 * 9 8 7 11 11 C 1.42905 * 113.99800 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.46808 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99938 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99772 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99790 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 119.99711 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47388 * 60.00119 * 16 14 12 18 18 H 1.48502 * 109.46862 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47367 * 299.99231 * 16 14 12 20 20 C 1.50694 * 109.53860 * 179.13584 * 7 6 5 21 21 O 1.20826 * 120.00423 * 240.18014 * 20 7 6 22 22 O 1.34226 * 120.00036 * 60.17282 * 20 7 6 23 23 C 1.53117 * 109.50241 * 120.10741 * 2 1 3 24 24 H 1.09000 * 109.47513 * 180.08927 * 1 2 3 25 25 H 1.09000 * 109.46468 * 300.09576 * 1 2 3 26 26 H 1.09000 * 109.47222 * 60.08918 * 1 2 3 27 27 H 1.09002 * 109.46396 * 300.89852 * 4 2 1 28 28 H 1.08994 * 109.46485 * 60.87777 * 4 2 1 29 29 H 1.00904 * 111.00225 * 185.83346 * 5 4 2 30 30 H 1.08995 * 109.46742 * 178.23410 * 6 5 4 31 31 H 1.09004 * 109.45381 * 58.25744 * 6 5 4 32 32 H 1.08996 * 109.47348 * 59.79788 * 8 7 6 33 33 H 1.09002 * 109.47352 * 179.80448 * 8 7 6 34 34 H 1.08996 * 109.47075 * 299.99941 * 9 8 7 35 35 H 1.09002 * 109.46903 * 60.00159 * 9 8 7 36 36 H 1.08998 * 109.46759 * 299.99729 * 11 10 9 37 37 H 1.09000 * 109.47376 * 60.00019 * 11 10 9 38 38 H 0.96997 * 119.99734 * 180.02562 * 15 14 12 39 39 H 0.96704 * 117.00454 * 179.97438 * 22 20 7 40 40 H 1.08997 * 109.52073 * 297.49809 * 23 2 1 41 41 H 1.09004 * 109.52347 * 57.69155 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0409 -0.7234 -1.2482 5 7 3.5092 -0.7421 -1.2378 6 6 4.0229 -1.4731 -0.0727 7 6 3.5712 -0.7722 1.2106 8 6 4.1279 0.6527 1.2374 9 6 5.6567 0.6036 1.1994 10 8 6.1767 1.9344 1.2251 11 6 7.6038 2.0015 1.1923 12 6 8.0397 3.4437 1.2239 13 1 7.3008 4.2304 1.2645 14 6 9.3818 3.7590 1.1999 15 7 10.2814 2.8010 1.1499 16 14 9.9220 5.5467 1.2383 17 1 9.4252 6.1873 2.4825 18 1 11.4050 5.6164 1.2043 19 1 9.3655 6.2575 0.0592 20 6 4.0804 -1.5340 2.4069 21 8 3.3007 -1.9919 3.2083 22 8 5.4003 -1.7040 2.5822 23 6 2.0412 -0.7240 1.2486 24 1 -0.3634 -1.0276 0.0016 25 1 -0.3632 0.5153 0.8892 26 1 -0.3634 0.5124 -0.8908 27 1 1.6646 -1.7464 -1.2547 28 1 1.6906 -0.2020 -2.1390 29 1 3.8720 -1.1293 -2.0961 30 1 5.1120 -1.4964 -0.1098 31 1 3.6372 -2.4926 -0.0848 32 1 3.7604 1.2027 0.3712 33 1 3.8030 1.1526 2.1500 34 1 6.0242 0.0535 2.0657 35 1 5.9816 0.1037 0.2869 36 1 8.0120 1.4799 2.0580 37 1 7.9688 1.5311 0.2793 38 1 11.2255 3.0228 1.1334 39 1 5.6791 -2.1993 3.3647 40 1 1.7157 -0.1873 2.1397 41 1 1.6452 -1.7394 1.2687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691733981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:11 Heat of formation + Delta-G solvation = -152.903888 kcal Electronic energy + Delta-G solvation = -21901.832378 eV Core-core repulsion = 18588.042237 eV Total energy + Delta-G solvation = -3313.790141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.04412 -38.79463 -36.65471 -36.08184 -33.81465 -33.30097 -32.55752 -28.98529 -26.86838 -26.74481 -24.76852 -23.40785 -22.51680 -22.03856 -20.89043 -18.67798 -17.96543 -17.06486 -16.32708 -16.02035 -15.81262 -15.27854 -14.93792 -14.65847 -14.41984 -14.20352 -13.94487 -13.70596 -13.39785 -13.08682 -12.73809 -12.29879 -12.15415 -12.06186 -11.70801 -11.65489 -11.27841 -11.03885 -10.89943 -10.82561 -10.72309 -10.66952 -10.42146 -10.27234 -10.14547 -9.86675 -9.04114 -8.70256 -8.57797 -8.05617 -6.05816 -4.07063 2.15719 2.96984 3.35580 3.37865 3.42046 4.04258 4.33666 4.40951 4.56233 4.60362 4.76784 4.85957 5.16592 5.21200 5.30463 5.33886 5.38166 5.44623 5.51727 5.53783 5.55982 5.74388 5.78190 5.82279 5.96226 6.04602 6.10503 6.15927 6.31738 6.49059 6.53582 6.70384 6.81205 7.19843 7.21166 7.51801 7.85075 7.88775 8.22678 8.68357 9.07346 9.57606 11.05719 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.023386 B = 0.004255 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.013763 B = 6579.039754 C = 7117.184791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.089 0.911 4 C 0.061 3.939 5 N -0.680 5.680 6 C 0.069 3.931 7 C -0.043 4.043 8 C -0.099 4.099 9 C 0.056 3.944 10 O -0.399 6.399 11 C 0.198 3.802 12 C -0.514 4.514 13 H 0.065 0.935 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.907 3.093 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.490 3.510 21 O -0.520 6.520 22 O -0.500 6.500 23 C -0.094 4.094 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.029 0.971 28 H 0.078 0.922 29 H 0.350 0.650 30 H 0.095 0.905 31 H 0.032 0.968 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.003 0.997 37 H 0.004 0.996 38 H 0.264 0.736 39 H 0.405 0.595 40 H 0.075 0.925 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.418 -11.170 -3.087 20.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.107 0.893 4 C -0.069 4.069 5 N -0.312 5.312 6 C -0.061 4.061 7 C -0.044 4.044 8 C -0.136 4.136 9 C -0.021 4.021 10 O -0.319 6.319 11 C 0.124 3.876 12 C -0.552 4.552 13 H 0.083 0.917 14 C -0.145 4.145 15 N -0.539 5.539 16 Si 0.734 3.266 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.200 1.200 20 C 0.332 3.668 21 O -0.408 6.408 22 O -0.312 6.312 23 C -0.131 4.131 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.096 0.904 29 H 0.169 0.831 30 H 0.113 0.887 31 H 0.050 0.950 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.021 0.979 37 H 0.022 0.978 38 H 0.073 0.927 39 H 0.264 0.736 40 H 0.094 0.906 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.607 -10.333 -2.924 19.777 hybrid contribution 0.656 -0.718 0.352 1.034 sum -15.951 -11.051 -2.572 19.575 Atomic orbital electron populations 1.21771 0.94644 1.01737 1.02106 1.21265 0.95318 1.01065 0.93627 0.89265 1.22036 0.87652 0.98563 0.98611 1.60076 1.07880 1.58288 1.04925 1.21917 1.01391 0.93631 0.89112 1.20568 0.96764 0.96539 0.90553 1.21456 0.96152 0.91946 1.04064 1.22534 0.92250 0.87046 1.00245 1.87802 1.24939 1.23943 1.95192 1.20134 0.74611 0.97584 0.95257 1.21054 0.91798 0.91812 1.50585 0.91659 1.24938 0.96166 0.98144 0.95224 1.69958 1.01198 1.32089 1.50624 0.86412 0.77171 0.84152 0.78824 1.20063 1.21202 1.20012 1.23447 0.80107 0.76511 0.86732 1.90683 1.57463 1.47360 1.45316 1.84745 1.25729 1.70514 1.50178 1.21570 0.91108 1.01588 0.98858 0.92869 0.92232 0.92345 0.95276 0.90392 0.83103 0.88714 0.94954 0.88245 0.91592 0.92737 0.94175 0.97881 0.97787 0.92683 0.73594 0.90636 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.20 37.16 0.34 -0.81 16 2 C -0.09 -0.92 2.53 -90.54 -0.23 -1.15 16 3 H 0.09 0.99 6.58 -51.93 -0.34 0.65 16 4 C 0.06 0.55 5.83 -3.83 -0.02 0.53 16 5 N -0.68 -7.20 6.12 -113.83 -0.70 -7.90 16 6 C 0.07 0.79 4.88 -3.84 -0.02 0.77 16 7 C -0.04 -0.55 0.51 -155.58 -0.08 -0.62 16 8 C -0.10 -1.54 4.19 -26.73 -0.11 -1.65 16 9 C 0.06 1.08 5.07 37.16 0.19 1.27 16 10 O -0.40 -9.95 10.33 -35.23 -0.36 -10.31 16 11 C 0.20 5.58 5.69 36.01 0.20 5.79 16 12 C -0.51 -15.43 9.43 -34.44 -0.32 -15.75 16 13 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 16 Si 0.91 22.07 29.54 -169.99 -5.02 17.05 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.49 6.71 6.86 36.00 0.25 6.96 16 21 O -0.52 -8.09 16.73 -18.75 -0.31 -8.41 16 22 O -0.50 -6.20 10.27 -39.25 -0.40 -6.60 16 23 C -0.09 -1.06 3.37 -26.61 -0.09 -1.15 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.35 3.08 8.90 -39.29 -0.35 2.73 16 30 H 0.09 1.17 6.39 -51.93 -0.33 0.84 16 31 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 1.57 6.01 -51.93 -0.31 1.26 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.05 1.04 5.32 -51.93 -0.28 0.76 16 35 H 0.04 0.75 6.42 -51.93 -0.33 0.42 16 36 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 37 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.40 3.27 9.10 45.56 0.41 3.69 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 LS Contribution 324.94 15.07 4.90 4.90 Total: -1.00 -34.03 324.94 -6.88 -40.91 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.72 Total: 1.07 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 0.01 Total: -4.27 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.04 Total: -34.34 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -1.08 Total: -25.32 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.03 -6.88 -40.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691733981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.995 kcal (2) G-P(sol) polarization free energy of solvation -34.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds