Wall clock time and date at job start Mon Mar 30 2020 05:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.54009 * 2 1 4 4 C 1.53044 * 109.49930 * 239.90697 * 2 1 3 5 5 N 1.46847 * 109.51335 * 180.88542 * 4 2 1 6 6 C 1.46830 * 111.21086 * 61.74856 * 5 4 2 7 7 C 1.53038 * 109.51757 * 298.25173 * 6 5 4 8 8 C 1.52999 * 109.50331 * 299.23944 * 7 6 5 9 9 C 1.53005 * 109.46621 * 299.80014 * 8 7 6 10 10 O 1.42902 * 109.46940 * 180.02562 * 9 8 7 11 11 C 1.42905 * 113.99800 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.46808 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99938 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99772 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99790 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 119.99711 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47388 * 60.00119 * 16 14 12 18 18 H 1.48502 * 109.46862 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47367 * 299.99231 * 16 14 12 20 20 C 1.50694 * 109.53860 * 179.13584 * 7 6 5 21 21 O 1.20826 * 120.00423 * 240.18014 * 20 7 6 22 22 O 1.34226 * 120.00036 * 60.17282 * 20 7 6 23 23 C 1.53117 * 109.50241 * 120.10741 * 2 1 3 24 24 H 1.09000 * 109.47513 * 180.08927 * 1 2 3 25 25 H 1.09000 * 109.46468 * 300.09576 * 1 2 3 26 26 H 1.09000 * 109.47222 * 60.08918 * 1 2 3 27 27 H 1.09002 * 109.46396 * 300.89852 * 4 2 1 28 28 H 1.08994 * 109.46485 * 60.87777 * 4 2 1 29 29 H 1.00904 * 111.00225 * 185.83346 * 5 4 2 30 30 H 1.08995 * 109.46742 * 178.23410 * 6 5 4 31 31 H 1.09004 * 109.45381 * 58.25744 * 6 5 4 32 32 H 1.08996 * 109.47348 * 59.79788 * 8 7 6 33 33 H 1.09002 * 109.47352 * 179.80448 * 8 7 6 34 34 H 1.08996 * 109.47075 * 299.99941 * 9 8 7 35 35 H 1.09002 * 109.46903 * 60.00159 * 9 8 7 36 36 H 1.08998 * 109.46759 * 299.99729 * 11 10 9 37 37 H 1.09000 * 109.47376 * 60.00019 * 11 10 9 38 38 H 0.96997 * 119.99734 * 180.02562 * 15 14 12 39 39 H 0.96704 * 117.00454 * 179.97438 * 22 20 7 40 40 H 1.08997 * 109.52073 * 297.49809 * 23 2 1 41 41 H 1.09004 * 109.52347 * 57.69155 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0409 -0.7234 -1.2482 5 7 3.5092 -0.7421 -1.2378 6 6 4.0229 -1.4731 -0.0727 7 6 3.5712 -0.7722 1.2106 8 6 4.1279 0.6527 1.2374 9 6 5.6567 0.6036 1.1994 10 8 6.1767 1.9344 1.2251 11 6 7.6038 2.0015 1.1923 12 6 8.0397 3.4437 1.2239 13 1 7.3008 4.2304 1.2645 14 6 9.3818 3.7590 1.1999 15 7 10.2814 2.8010 1.1499 16 14 9.9220 5.5467 1.2383 17 1 9.4252 6.1873 2.4825 18 1 11.4050 5.6164 1.2043 19 1 9.3655 6.2575 0.0592 20 6 4.0804 -1.5340 2.4069 21 8 3.3007 -1.9919 3.2083 22 8 5.4003 -1.7040 2.5822 23 6 2.0412 -0.7240 1.2486 24 1 -0.3634 -1.0276 0.0016 25 1 -0.3632 0.5153 0.8892 26 1 -0.3634 0.5124 -0.8908 27 1 1.6646 -1.7464 -1.2547 28 1 1.6906 -0.2020 -2.1390 29 1 3.8720 -1.1293 -2.0961 30 1 5.1120 -1.4964 -0.1098 31 1 3.6372 -2.4926 -0.0848 32 1 3.7604 1.2027 0.3712 33 1 3.8030 1.1526 2.1500 34 1 6.0242 0.0535 2.0657 35 1 5.9816 0.1037 0.2869 36 1 8.0120 1.4799 2.0580 37 1 7.9688 1.5311 0.2793 38 1 11.2255 3.0228 1.1334 39 1 5.6791 -2.1993 3.3647 40 1 1.7157 -0.1873 2.1397 41 1 1.6452 -1.7394 1.2687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691733981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:10 Heat of formation + Delta-G solvation = -178.066089 kcal Electronic energy + Delta-G solvation = -21902.923493 eV Core-core repulsion = 18588.042237 eV Total energy + Delta-G solvation = -3314.881256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.10851 -39.77256 -38.45888 -37.22835 -35.16657 -34.52944 -34.12817 -30.53097 -28.73789 -27.61480 -25.76501 -24.53467 -24.29853 -23.65652 -21.79538 -19.66259 -19.08615 -18.61193 -17.99963 -17.42142 -17.12131 -16.60016 -16.33040 -16.11982 -15.82462 -15.33438 -15.15094 -14.73728 -14.57334 -14.48747 -13.95852 -13.75370 -13.44692 -13.03547 -12.91810 -12.82051 -12.76723 -12.63486 -12.40486 -12.20556 -12.12025 -11.85627 -11.73745 -11.53238 -11.32721 -11.24084 -11.22021 -10.77566 -10.12048 -9.38248 -8.29669 -6.42165 1.05134 1.41512 1.46485 1.54773 1.99025 2.36680 3.03863 3.05767 3.30530 3.42851 3.63946 3.89534 3.98241 4.08740 4.25073 4.33075 4.42510 4.48528 4.54036 4.63227 4.74211 4.76165 4.78735 4.81515 4.89243 4.91772 4.99535 5.10407 5.20286 5.24673 5.28532 5.35567 5.48771 5.51884 5.57896 5.99229 6.00755 6.48557 6.57510 6.86421 6.90495 7.29911 8.82464 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.023386 B = 0.004255 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.013763 B = 6579.039754 C = 7117.184791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.073 0.927 4 C 0.062 3.938 5 N -0.694 5.694 6 C 0.073 3.927 7 C -0.039 4.039 8 C -0.086 4.086 9 C 0.052 3.948 10 O -0.414 6.414 11 C 0.213 3.787 12 C -0.551 4.551 13 H 0.061 0.939 14 C 0.008 3.992 15 N -0.930 5.930 16 Si 0.983 3.017 17 H -0.266 1.266 18 H -0.274 1.274 19 H -0.265 1.265 20 C 0.492 3.508 21 O -0.539 6.539 22 O -0.506 6.506 23 C -0.090 4.090 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.091 0.909 29 H 0.360 0.640 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.044 0.956 36 H -0.016 1.016 37 H -0.014 1.014 38 H 0.271 0.729 39 H 0.423 0.577 40 H 0.067 0.933 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.153 -10.801 -3.687 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 H 0.092 0.908 4 C -0.067 4.067 5 N -0.327 5.327 6 C -0.057 4.057 7 C -0.041 4.041 8 C -0.123 4.123 9 C -0.025 4.025 10 O -0.334 6.334 11 C 0.138 3.862 12 C -0.589 4.589 13 H 0.079 0.921 14 C -0.191 4.191 15 N -0.569 5.569 16 Si 0.805 3.195 17 H -0.191 1.191 18 H -0.199 1.199 19 H -0.189 1.189 20 C 0.335 3.665 21 O -0.430 6.430 22 O -0.319 6.319 23 C -0.127 4.127 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.109 0.891 29 H 0.181 0.819 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.002 0.998 37 H 0.003 0.997 38 H 0.080 0.920 39 H 0.285 0.715 40 H 0.085 0.915 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.348 -9.991 -3.525 20.328 hybrid contribution 0.889 -0.924 0.556 1.398 sum -16.459 -10.915 -2.970 19.971 Atomic orbital electron populations 1.21735 0.93009 1.02432 1.02623 1.21260 0.96668 0.99972 0.93249 0.90814 1.22081 0.86633 0.99311 0.98665 1.60061 1.09042 1.58495 1.05069 1.21823 1.00730 0.94305 0.88800 1.20580 0.97788 0.94579 0.91164 1.21315 0.93291 0.94037 1.03660 1.22815 0.94481 0.84565 1.00609 1.87757 1.23007 1.27478 1.95205 1.19767 0.76318 0.96729 0.93367 1.21390 0.92671 0.92482 1.52354 0.92072 1.25952 0.95796 1.03478 0.93854 1.70065 1.01812 1.34669 1.50337 0.85243 0.77191 0.77656 0.79374 1.19098 1.19901 1.18939 1.23582 0.80198 0.76165 0.86582 1.90673 1.57947 1.48373 1.45965 1.84685 1.25194 1.70718 1.51347 1.21564 0.89740 1.01995 0.99418 0.92053 0.92395 0.91216 0.94066 0.89077 0.81939 0.89930 0.93462 0.88334 0.92298 0.92478 0.93744 0.99808 0.99650 0.92037 0.71478 0.91469 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.20 71.98 0.66 -1.28 16 2 C -0.09 -1.68 2.53 -10.74 -0.03 -1.71 16 3 H 0.07 1.58 6.58 -2.39 -0.02 1.56 16 4 C 0.06 1.00 5.83 86.33 0.50 1.50 16 5 N -0.69 -13.73 6.12 -514.04 -3.15 -16.88 16 6 C 0.07 1.60 4.88 86.33 0.42 2.02 16 7 C -0.04 -0.99 0.51 -52.87 -0.03 -1.01 16 8 C -0.09 -2.67 4.19 30.60 0.13 -2.54 16 9 C 0.05 2.01 5.07 71.98 0.37 2.37 16 10 O -0.41 -21.17 10.33 -148.98 -1.54 -22.71 16 11 C 0.21 12.36 5.69 71.24 0.41 12.77 16 12 C -0.55 -33.59 9.43 25.60 0.24 -33.35 16 13 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 14 C 0.01 0.45 5.46 84.66 0.46 0.92 16 15 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 16 Si 0.98 44.76 29.54 68.60 2.03 46.79 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 20 C 0.49 13.23 6.86 71.23 0.49 13.72 16 21 O -0.54 -16.47 16.73 21.96 0.37 -16.10 16 22 O -0.51 -12.36 10.27 -51.38 -0.53 -12.89 16 23 C -0.09 -1.93 3.37 30.68 0.10 -1.83 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.36 5.80 8.90 -89.69 -0.80 5.00 16 30 H 0.08 2.00 6.39 -2.39 -0.02 1.98 16 31 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.10 3.11 6.01 -2.39 -0.01 3.09 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 2.21 5.32 -2.39 -0.01 2.19 16 35 H 0.04 1.70 6.42 -2.39 -0.02 1.68 16 36 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 37 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.42 6.62 9.10 -74.05 -0.67 5.94 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.07 1.54 8.04 -2.38 -0.02 1.52 16 Total: -1.00 -72.45 324.94 0.76 -71.69 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -0.43 Total: 14.63 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 3.73 Total: -8.42 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: -2.86 Total: -73.00 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -1.70 Total: -51.70 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -72.45 0.76 -71.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691733981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.373 kcal (2) G-P(sol) polarization free energy of solvation -72.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds