Wall clock time and date at job start Mon Mar 30 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 113.99866 * 2 1 4 4 C 1.53000 * 109.46978 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.90794 * 54.58431 * 4 3 2 6 6 O 1.20827 * 119.99538 * 265.70045 * 5 4 3 7 7 O 1.34226 * 120.00537 * 85.69940 * 5 4 3 8 8 C 1.53994 * 109.91913 * 293.47588 * 4 3 2 9 9 C 1.54596 * 105.14158 * 241.87257 * 8 4 3 10 10 C 1.54936 * 102.92014 * 21.95716 * 9 8 4 11 11 N 1.47902 * 109.91770 * 175.88696 * 4 3 2 12 12 C 1.46904 * 110.99924 * 333.51012 * 11 4 3 13 13 H 1.08997 * 109.47196 * 327.57478 * 12 11 4 14 14 C 1.52998 * 109.47201 * 87.57842 * 12 11 4 15 15 C 1.53004 * 109.46845 * 207.58033 * 12 11 4 16 16 C 1.50700 * 109.47365 * 64.99963 * 15 12 11 17 17 H 1.08001 * 119.99490 * 0.02562 * 16 15 12 18 18 C 1.37875 * 119.99753 * 179.97438 * 16 15 12 19 19 N 1.31514 * 119.99584 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00414 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47103 * 89.99698 * 20 18 16 22 22 H 1.48492 * 109.47287 * 209.99708 * 20 18 16 23 23 H 1.48498 * 109.47173 * 329.99954 * 20 18 16 24 24 H 1.09004 * 109.47364 * 299.99572 * 1 2 3 25 25 H 1.09006 * 109.47536 * 59.99573 * 1 2 3 26 26 H 1.09001 * 109.46990 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47331 * 299.99982 * 3 2 1 28 28 H 1.08995 * 109.47527 * 60.00348 * 3 2 1 29 29 H 0.96700 * 117.00193 * 180.02562 * 7 5 4 30 30 H 1.08995 * 110.30604 * 0.79181 * 8 4 3 31 31 H 1.09003 * 110.30702 * 122.85979 * 8 4 3 32 32 H 1.09003 * 110.72463 * 140.31288 * 9 8 4 33 33 H 1.09001 * 110.72557 * 263.60146 * 9 8 4 34 34 H 1.09001 * 110.67022 * 81.02017 * 10 9 8 35 35 H 1.09002 * 110.66730 * 203.98204 * 10 9 8 36 36 H 1.08999 * 109.46886 * 68.52433 * 14 12 11 37 37 H 1.09002 * 109.46928 * 188.52012 * 14 12 11 38 38 H 1.08995 * 109.47059 * 308.52594 * 14 12 11 39 39 H 1.09003 * 109.46483 * 185.00010 * 15 12 11 40 40 H 1.09002 * 109.47269 * 304.99382 * 15 12 11 41 41 H 0.97005 * 119.99883 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9816 0.3258 -1.1558 6 8 4.1683 -0.8568 -0.9924 7 8 4.1716 0.8743 -2.3660 8 6 4.0134 0.5680 1.3270 9 6 4.9011 1.6526 1.9795 10 6 4.4145 2.9554 1.2966 11 7 4.1471 2.5275 -0.1004 12 6 3.2436 3.4688 -0.7755 13 1 2.6518 2.9347 -1.5188 14 6 2.3111 4.1088 0.2549 15 6 4.0659 4.5589 -1.4658 16 6 4.8941 3.9438 -2.5643 17 1 4.8391 2.8815 -2.7516 18 6 5.7212 4.7372 -3.3307 19 7 6.4436 4.2004 -4.2897 20 14 5.8158 6.5744 -3.0070 21 1 6.8860 6.8478 -2.0144 22 1 6.1228 7.2851 -4.2742 23 1 4.5139 7.0510 -2.4751 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8464 -0.8900 28 1 1.6886 1.8464 0.8899 29 1 4.4576 0.2833 -3.0759 30 1 3.1610 0.3412 1.9673 31 1 4.5942 -0.3347 1.1374 32 1 4.7310 1.6943 3.0554 33 1 5.9536 1.4724 1.7609 34 1 3.5021 3.3197 1.7687 35 1 5.1923 3.7186 1.3257 36 1 2.8868 4.7649 0.9077 37 1 1.5450 4.6890 -0.2593 38 1 1.8375 3.3284 0.8504 39 1 3.3951 5.3055 -1.8910 40 1 4.7234 5.0340 -0.7376 41 1 7.0258 4.7585 -4.8287 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692381444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:17 Heat of formation + Delta-G solvation = -103.966655 kcal Electronic energy + Delta-G solvation = -23233.318952 eV Core-core repulsion = 19921.650888 eV Total energy + Delta-G solvation = -3311.668064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.82058 -38.63885 -37.36372 -35.51817 -34.24012 -32.15314 -30.84655 -28.92520 -28.12064 -26.78441 -24.78350 -23.55320 -22.84540 -21.50070 -19.51662 -18.76143 -17.47841 -16.82142 -16.57831 -16.29442 -15.85018 -15.66537 -14.83262 -14.44919 -14.27822 -13.78387 -13.67490 -13.35801 -12.94100 -12.78537 -12.29314 -12.17117 -12.02695 -11.78351 -11.44749 -11.41622 -11.23617 -10.98744 -10.95644 -10.73872 -10.70079 -10.33775 -10.13076 -10.07573 -9.87248 -9.57072 -9.32007 -8.85599 -8.35953 -7.91504 -5.83303 -3.75904 2.77735 3.38641 3.46468 3.47319 3.55438 3.65528 4.29063 4.60384 4.62659 4.84847 5.00411 5.10289 5.21676 5.24762 5.33993 5.40161 5.49463 5.52678 5.57257 5.61834 5.70873 5.73889 5.78474 5.92910 6.05411 6.13119 6.24786 6.28212 6.34032 6.43014 6.72646 6.96489 7.05619 7.16625 7.22475 7.44918 7.65028 7.98113 8.60966 8.82304 9.43364 9.80688 11.30479 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020600 B = 0.006921 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.929802 B = 4044.852595 C = 4278.169956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.036 3.964 4 C 0.106 3.894 5 C 0.509 3.491 6 O -0.528 6.528 7 O -0.475 6.475 8 C -0.111 4.111 9 C -0.126 4.126 10 C 0.023 3.977 11 N -0.458 5.458 12 C 0.078 3.922 13 H 0.082 0.918 14 C -0.197 4.197 15 C 0.001 3.999 16 C -0.492 4.492 17 H 0.103 0.897 18 C 0.060 3.940 19 N -0.910 5.910 20 Si 0.867 3.133 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.270 1.270 24 H 0.039 0.961 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.401 0.599 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.017 0.983 40 H 0.011 0.989 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.301 -4.625 11.874 16.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.042 4.042 4 C 0.014 3.986 5 C 0.351 3.649 6 O -0.417 6.417 7 O -0.283 6.283 8 C -0.149 4.149 9 C -0.164 4.164 10 C -0.105 4.105 11 N -0.182 5.182 12 C -0.030 4.030 13 H 0.100 0.900 14 C -0.255 4.255 15 C -0.037 4.037 16 C -0.530 4.530 17 H 0.121 0.879 18 C -0.138 4.138 19 N -0.551 5.551 20 Si 0.696 3.304 21 H -0.208 1.208 22 H -0.218 1.218 23 H -0.195 1.195 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.258 0.742 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.035 0.965 40 H 0.029 0.971 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.665 -4.803 11.756 15.959 hybrid contribution -0.606 1.073 -0.001 1.232 sum -10.271 -3.730 11.755 16.049 Atomic orbital electron populations 1.22740 0.81172 1.02686 0.99910 1.87972 1.19523 1.27305 1.95387 1.23799 0.92676 0.85512 1.02184 1.21539 0.91718 0.92742 0.92613 1.22781 0.72155 0.86113 0.83827 1.90624 1.48957 1.17495 1.84670 1.84823 1.78803 1.45274 1.19429 1.22395 1.00260 0.99451 0.92758 1.22562 1.00546 0.94316 0.98966 1.23516 1.00770 0.97745 0.88443 1.65122 1.40098 0.98595 1.14430 1.22051 0.92205 0.94228 0.94476 0.89994 1.22960 1.00566 1.01354 1.00621 1.19582 0.95104 0.92939 0.96049 1.21412 1.21446 0.97911 1.12235 0.87945 1.24992 0.95969 0.97400 0.95461 1.69899 1.28359 1.35154 1.21653 0.86988 0.78476 0.87609 0.77328 1.20763 1.21845 1.19521 0.94226 0.93999 0.89620 0.90893 0.91179 0.74174 0.90487 0.89302 0.91007 0.90464 0.92607 0.89243 0.91970 0.92200 0.92819 0.96535 0.97086 0.93291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.70 9.94 -35.23 -0.35 -6.06 16 3 C 0.04 0.52 3.12 37.16 0.12 0.64 16 4 C 0.11 1.77 0.60 -131.68 -0.08 1.69 16 5 C 0.51 9.81 6.72 36.01 0.24 10.06 16 6 O -0.53 -10.91 16.39 -18.75 -0.31 -11.22 16 7 O -0.48 -9.36 10.61 -39.25 -0.42 -9.78 16 8 C -0.11 -1.62 5.91 -25.37 -0.15 -1.77 16 9 C -0.13 -1.65 7.06 -24.87 -0.18 -1.83 16 10 C 0.02 0.33 5.77 -1.90 -0.01 0.32 16 11 N -0.46 -8.25 4.29 -208.45 -0.89 -9.15 16 12 C 0.08 1.44 1.64 -67.71 -0.11 1.33 16 13 H 0.08 1.59 5.74 -51.93 -0.30 1.29 16 14 C -0.20 -2.81 7.23 37.16 0.27 -2.55 16 15 C 0.00 0.02 3.69 -27.88 -0.10 -0.08 16 16 C -0.49 -13.52 9.39 -34.44 -0.32 -13.85 16 17 H 0.10 2.95 5.52 -52.49 -0.29 2.66 16 18 C 0.06 1.75 5.47 -17.82 -0.10 1.65 16 19 N -0.91 -27.99 13.96 55.43 0.77 -27.22 16 20 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 24 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.11 5.54 -51.93 -0.29 0.82 16 28 H 0.07 0.88 5.66 -51.93 -0.29 0.59 16 29 H 0.40 6.39 9.10 45.56 0.41 6.80 16 30 H 0.08 1.00 7.61 -51.93 -0.40 0.61 16 31 H 0.09 1.43 6.79 -51.93 -0.35 1.07 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.72 5.14 -51.93 -0.27 0.45 16 35 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.06 0.86 6.88 -51.93 -0.36 0.51 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.66 4.15 -51.93 -0.22 0.44 16 39 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 40 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 313.24 15.07 4.72 4.72 Total: -1.00 -33.63 313.24 -5.69 -39.32 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.24 Total: 5.27 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 0.69 Total: -2.93 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.12 Total: -36.36 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -1.07 Total: -27.05 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.63 -5.69 -39.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692381444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.649 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds