Wall clock time and date at job start Mon Mar 30 2020 05:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46906 * 2 1 4 4 C 1.52997 * 109.47188 * 240.00121 * 2 1 3 5 5 O 1.45202 * 109.47137 * 120.00098 * 2 1 3 6 6 C 1.34665 * 117.00049 * 60.00387 * 5 2 1 7 7 O 1.21507 * 119.99944 * 359.97438 * 6 5 2 8 8 N 1.34771 * 119.99800 * 179.97438 * 6 5 2 9 9 C 1.37194 * 120.00325 * 0.02562 * 8 6 5 10 10 H 1.08001 * 119.99857 * 321.04785 * 9 8 6 11 11 C 1.38890 * 120.00250 * 141.05151 * 9 8 6 12 12 N 1.31464 * 119.99776 * 339.07971 * 11 9 8 13 13 Si 1.86797 * 120.00062 * 159.08629 * 11 9 8 14 14 H 1.48494 * 109.47384 * 59.99451 * 13 11 9 15 15 H 1.48498 * 109.47050 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.46858 * 299.99396 * 13 11 9 17 17 C 1.46497 * 119.99869 * 179.97438 * 8 6 5 18 18 C 1.53010 * 109.46991 * 93.23176 * 17 8 6 19 19 H 1.09000 * 110.41213 * 57.69033 * 18 17 8 20 20 C 1.54478 * 110.37154 * 180.02562 * 18 17 8 21 21 C 1.54512 * 104.05727 * 142.81098 * 20 18 17 22 22 C 1.54475 * 104.06761 * 359.97438 * 21 20 18 23 23 O 1.44431 * 104.89838 * 335.96711 * 22 21 20 24 24 H 1.09002 * 109.47306 * 299.99440 * 1 2 3 25 25 H 1.09001 * 109.47564 * 59.99871 * 1 2 3 26 26 H 1.09002 * 109.47147 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46896 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47114 * 300.00404 * 3 2 1 29 29 H 1.09002 * 109.46680 * 60.00177 * 3 2 1 30 30 H 1.08999 * 109.47479 * 299.99765 * 4 2 1 31 31 H 1.09007 * 109.47416 * 59.99971 * 4 2 1 32 32 H 1.09005 * 109.47057 * 179.97438 * 4 2 1 33 33 H 0.96998 * 119.99648 * 180.02562 * 12 11 9 34 34 H 1.08995 * 109.47679 * 333.23394 * 17 8 6 35 35 H 1.09004 * 109.47599 * 213.23080 * 17 8 6 36 36 H 1.08994 * 110.51238 * 24.16813 * 20 18 17 37 37 H 1.08999 * 110.62481 * 261.50768 * 20 18 17 38 38 H 1.09005 * 110.50973 * 241.34822 * 21 20 18 39 39 H 1.09004 * 110.62614 * 118.70472 * 21 20 18 40 40 H 1.08997 * 110.37165 * 94.85167 * 22 21 20 41 41 H 1.08992 * 110.37244 * 217.08215 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9726 1.3383 7 8 0.9509 -2.5097 0.5040 8 7 2.0680 -2.6660 2.4166 9 6 2.8594 -2.0594 3.3589 10 1 3.6342 -1.3723 3.0521 11 6 2.6644 -2.3289 4.7073 12 7 1.5134 -2.8104 5.1216 13 14 4.0375 -2.0071 5.9323 14 1 4.3997 -0.5673 5.9029 15 1 3.5803 -2.3754 7.2963 16 1 5.2243 -2.8236 5.5713 17 6 1.6740 -4.0671 2.5831 18 6 2.7539 -4.9745 1.9899 19 1 3.7154 -4.7825 2.4661 20 6 2.3587 -6.4588 2.1539 21 6 2.8542 -7.1253 0.8509 22 6 3.4895 -5.9647 0.0536 23 8 2.8504 -4.7726 0.5602 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1298 1.4425 0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6765 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1393 32 1 3.1300 -0.7208 -1.2494 33 1 1.3771 -2.9983 6.0634 34 1 0.7293 -4.2426 2.0686 35 1 1.5564 -4.2880 3.6440 36 1 1.2772 -6.5581 2.2463 37 1 2.8568 -6.8954 3.0195 38 1 2.0176 -7.5542 0.2993 39 1 3.5984 -7.8909 1.0702 40 1 4.5639 -5.9246 0.2330 41 1 3.2873 -6.0804 -1.0111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698424213.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:54 Heat of formation + Delta-G solvation = -125.511871 kcal Electronic energy + Delta-G solvation = -22822.647240 eV Core-core repulsion = 19510.044905 eV Total energy + Delta-G solvation = -3312.602334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.52213 -38.67755 -36.46579 -34.45643 -32.98161 -31.61077 -31.48110 -29.52260 -26.85119 -26.75539 -25.35619 -24.47225 -21.81163 -20.72086 -20.13618 -18.91846 -17.45699 -16.40788 -15.63628 -15.41950 -15.06489 -14.76841 -14.73505 -14.49536 -13.91014 -13.52644 -13.37940 -13.17602 -12.67041 -12.14017 -11.97053 -11.64475 -11.42129 -11.34590 -11.33637 -11.24299 -11.17431 -11.00419 -10.97016 -10.61326 -10.52356 -10.44838 -10.32849 -10.20967 -10.09465 -9.33980 -9.11211 -9.07900 -8.57501 -7.43456 -6.29662 -3.98981 3.19422 3.25284 3.27354 3.61566 4.22820 4.30367 4.54555 4.98076 5.07783 5.19146 5.37656 5.38639 5.42425 5.47657 5.58449 5.71543 5.79485 5.93237 6.01966 6.03790 6.08209 6.12735 6.18511 6.25240 6.29527 6.34260 6.42443 6.47234 6.48845 6.52449 6.83113 6.93869 7.02937 7.16893 7.55778 7.56926 7.75671 8.09719 8.49562 9.19494 9.58131 10.18029 10.74600 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.009577 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.230584 B = 2923.080231 C = 4641.572261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.133 3.867 3 C -0.137 4.137 4 C -0.177 4.177 5 O -0.353 6.353 6 C 0.622 3.378 7 O -0.611 6.611 8 N -0.432 5.432 9 C -0.322 4.322 10 H 0.088 0.912 11 C 0.039 3.961 12 N -0.870 5.870 13 Si 0.915 3.085 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.143 3.857 18 C 0.061 3.939 19 H 0.068 0.932 20 C -0.146 4.146 21 C -0.152 4.152 22 C 0.041 3.959 23 O -0.350 6.350 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.268 0.732 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.232 -2.252 -6.246 7.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.095 3.905 3 C -0.194 4.194 4 C -0.234 4.234 5 O -0.268 6.268 6 C 0.378 3.622 7 O -0.505 6.505 8 N -0.158 5.158 9 C -0.450 4.450 10 H 0.106 0.894 11 C -0.166 4.166 12 N -0.508 5.508 13 Si 0.741 3.259 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.200 1.200 17 C 0.019 3.981 18 C 0.002 3.998 19 H 0.086 0.914 20 C -0.185 4.185 21 C -0.190 4.190 22 C -0.037 4.037 23 O -0.269 6.269 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.135 0.865 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.857 -2.203 -6.445 7.060 hybrid contribution 0.762 -0.068 0.782 1.094 sum 2.620 -2.271 -5.663 6.640 Atomic orbital electron populations 1.22455 0.95085 1.04920 1.00977 1.21710 0.93756 0.91215 0.83854 1.21786 1.01778 0.93786 1.02033 1.22466 1.00912 1.03914 0.96108 1.86378 1.71681 1.25068 1.43658 1.18302 0.79717 0.79629 0.84522 1.90698 1.43866 1.70531 1.45443 1.42135 1.47395 1.07694 1.18549 1.19401 1.12554 1.27400 0.85630 0.89398 1.25356 0.96168 0.97270 0.97789 1.69937 1.21076 1.43516 1.16243 0.86196 0.81329 0.79177 0.79180 1.19752 1.21013 1.19957 1.21463 0.94588 0.79233 1.02774 1.23661 1.00377 0.93510 0.82214 0.91405 1.22899 1.02204 0.95968 0.97410 1.22905 1.00676 0.98487 0.96933 1.23283 0.96338 0.85520 0.98548 1.89422 1.79959 1.37120 1.20366 0.92752 0.92642 0.89218 0.92020 0.91320 0.91871 0.88954 0.92721 0.92973 0.92192 0.91593 0.86466 0.90708 0.90973 0.91202 0.91335 0.93311 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.29 8.37 37.16 0.31 -2.98 16 2 C 0.13 2.58 1.13 -90.62 -0.10 2.48 16 3 C -0.14 -2.12 8.85 37.16 0.33 -1.79 16 4 C -0.18 -3.24 8.37 37.16 0.31 -2.92 16 5 O -0.35 -8.63 9.04 -40.39 -0.37 -8.99 16 6 C 0.62 16.35 7.37 54.05 0.40 16.75 16 7 O -0.61 -16.13 11.02 -20.10 -0.22 -16.35 16 8 N -0.43 -11.45 2.49 -120.22 -0.30 -11.75 16 9 C -0.32 -8.69 8.87 -14.91 -0.13 -8.82 16 10 H 0.09 2.40 7.78 -52.49 -0.41 1.99 16 11 C 0.04 1.00 4.99 -17.47 -0.09 0.91 16 12 N -0.87 -23.23 11.49 55.49 0.64 -22.59 16 13 Si 0.91 20.02 29.60 -169.99 -5.03 14.99 16 14 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 17 C 0.14 3.43 4.70 -4.04 -0.02 3.41 16 18 C 0.06 1.27 3.53 -25.95 -0.09 1.18 16 19 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 20 C -0.15 -2.38 6.63 -25.16 -0.17 -2.55 16 21 C -0.15 -2.13 7.09 -25.16 -0.18 -2.31 16 22 C 0.04 0.66 7.62 37.93 0.29 0.95 16 23 O -0.35 -7.56 10.65 -35.23 -0.38 -7.94 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.09 1.92 5.88 -51.93 -0.31 1.61 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.09 1.97 5.88 -51.93 -0.31 1.67 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.07 1.64 7.33 -51.93 -0.38 1.26 16 35 H 0.12 2.91 5.58 -51.93 -0.29 2.62 16 36 H 0.07 1.20 7.87 -51.93 -0.41 0.79 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 327.62 15.07 4.94 4.94 Total: -1.00 -30.29 327.62 -6.59 -36.88 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.73 Total: 6.53 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 0.86 Total: 4.29 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.34 Total: -34.34 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.96 Total: -33.29 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.29 -6.59 -36.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698424213.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.637 kcal (2) G-P(sol) polarization free energy of solvation -30.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds