Wall clock time and date at job start Mon Mar 30 2020 05:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46906 * 2 1 4 4 C 1.52997 * 109.47188 * 240.00121 * 2 1 3 5 5 O 1.45202 * 109.47137 * 120.00098 * 2 1 3 6 6 C 1.34665 * 117.00049 * 60.00387 * 5 2 1 7 7 O 1.21507 * 119.99944 * 359.97438 * 6 5 2 8 8 N 1.34771 * 119.99800 * 179.97438 * 6 5 2 9 9 C 1.37194 * 120.00325 * 0.02562 * 8 6 5 10 10 H 1.08001 * 119.99857 * 321.04785 * 9 8 6 11 11 C 1.38890 * 120.00250 * 141.05151 * 9 8 6 12 12 N 1.31464 * 119.99776 * 339.07971 * 11 9 8 13 13 Si 1.86797 * 120.00062 * 159.08629 * 11 9 8 14 14 H 1.48494 * 109.47384 * 59.99451 * 13 11 9 15 15 H 1.48498 * 109.47050 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.46858 * 299.99396 * 13 11 9 17 17 C 1.46497 * 119.99869 * 179.97438 * 8 6 5 18 18 C 1.53010 * 109.46991 * 93.23176 * 17 8 6 19 19 H 1.09000 * 110.41213 * 57.69033 * 18 17 8 20 20 C 1.54478 * 110.37154 * 180.02562 * 18 17 8 21 21 C 1.54512 * 104.05727 * 142.81098 * 20 18 17 22 22 C 1.54475 * 104.06761 * 359.97438 * 21 20 18 23 23 O 1.44431 * 104.89838 * 335.96711 * 22 21 20 24 24 H 1.09002 * 109.47306 * 299.99440 * 1 2 3 25 25 H 1.09001 * 109.47564 * 59.99871 * 1 2 3 26 26 H 1.09002 * 109.47147 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46896 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47114 * 300.00404 * 3 2 1 29 29 H 1.09002 * 109.46680 * 60.00177 * 3 2 1 30 30 H 1.08999 * 109.47479 * 299.99765 * 4 2 1 31 31 H 1.09007 * 109.47416 * 59.99971 * 4 2 1 32 32 H 1.09005 * 109.47057 * 179.97438 * 4 2 1 33 33 H 0.96998 * 119.99648 * 180.02562 * 12 11 9 34 34 H 1.08995 * 109.47679 * 333.23394 * 17 8 6 35 35 H 1.09004 * 109.47599 * 213.23080 * 17 8 6 36 36 H 1.08994 * 110.51238 * 24.16813 * 20 18 17 37 37 H 1.08999 * 110.62481 * 261.50768 * 20 18 17 38 38 H 1.09005 * 110.50973 * 241.34822 * 21 20 18 39 39 H 1.09004 * 110.62614 * 118.70472 * 21 20 18 40 40 H 1.08997 * 110.37165 * 94.85167 * 22 21 20 41 41 H 1.08992 * 110.37244 * 217.08215 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9726 1.3383 7 8 0.9509 -2.5097 0.5040 8 7 2.0680 -2.6660 2.4166 9 6 2.8594 -2.0594 3.3589 10 1 3.6342 -1.3723 3.0521 11 6 2.6644 -2.3289 4.7073 12 7 1.5134 -2.8104 5.1216 13 14 4.0375 -2.0071 5.9323 14 1 4.3997 -0.5673 5.9029 15 1 3.5803 -2.3754 7.2963 16 1 5.2243 -2.8236 5.5713 17 6 1.6740 -4.0671 2.5831 18 6 2.7539 -4.9745 1.9899 19 1 3.7154 -4.7825 2.4661 20 6 2.3587 -6.4588 2.1539 21 6 2.8542 -7.1253 0.8509 22 6 3.4895 -5.9647 0.0536 23 8 2.8504 -4.7726 0.5602 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1298 1.4425 0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6765 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1393 32 1 3.1300 -0.7208 -1.2494 33 1 1.3771 -2.9983 6.0634 34 1 0.7293 -4.2426 2.0686 35 1 1.5564 -4.2880 3.6440 36 1 1.2772 -6.5581 2.2463 37 1 2.8568 -6.8954 3.0195 38 1 2.0176 -7.5542 0.2993 39 1 3.5984 -7.8909 1.0702 40 1 4.5639 -5.9246 0.2330 41 1 3.2873 -6.0804 -1.0111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698424213.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:54 Heat of formation + Delta-G solvation = -144.012139 kcal Electronic energy + Delta-G solvation = -22823.449472 eV Core-core repulsion = 19510.044905 eV Total energy + Delta-G solvation = -3313.404566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.35478 -40.19552 -38.23352 -36.41620 -34.65166 -33.52852 -32.94179 -31.12821 -28.24823 -28.19321 -27.17074 -26.28698 -23.32996 -22.20483 -21.74468 -20.78030 -19.28436 -18.25485 -17.27329 -17.09023 -16.77195 -16.42765 -16.25420 -16.23880 -15.60720 -15.14011 -15.04498 -14.50547 -14.28761 -13.78474 -13.35438 -13.23663 -13.04658 -13.02107 -12.84876 -12.70354 -12.68813 -12.58622 -12.50712 -12.24111 -12.16782 -12.01425 -11.95579 -11.88796 -11.47431 -11.07161 -11.03347 -10.64272 -10.49569 -9.43333 -8.28628 -6.06316 1.44198 1.46960 1.56110 1.87599 2.30276 2.42079 3.04004 3.13786 3.74418 3.77427 3.94101 3.95407 3.98345 4.08185 4.11056 4.26222 4.44046 4.55527 4.65631 4.68097 4.71151 4.82126 4.84620 4.87109 4.90892 4.93407 4.96693 5.04902 5.11700 5.15638 5.19106 5.27850 5.41428 5.46341 5.55088 5.87465 6.07208 6.17894 6.46254 7.16574 7.57709 8.20136 8.75668 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.009577 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.230584 B = 2923.080231 C = 4641.572261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.112 3.888 3 C -0.129 4.129 4 C -0.167 4.167 5 O -0.374 6.374 6 C 0.612 3.388 7 O -0.623 6.623 8 N -0.445 5.445 9 C -0.347 4.347 10 H 0.077 0.923 11 C 0.004 3.996 12 N -0.896 5.896 13 Si 0.983 3.017 14 H -0.270 1.270 15 H -0.276 1.276 16 H -0.265 1.265 17 C 0.146 3.854 18 C 0.064 3.936 19 H 0.055 0.945 20 C -0.142 4.142 21 C -0.140 4.140 22 C 0.030 3.970 23 O -0.390 6.390 24 H 0.047 0.953 25 H 0.095 0.905 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.273 0.727 34 H 0.045 0.955 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.060 0.940 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.317 -2.305 -6.596 7.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.075 3.925 3 C -0.186 4.186 4 C -0.224 4.224 5 O -0.289 6.289 6 C 0.368 3.632 7 O -0.519 6.519 8 N -0.172 5.172 9 C -0.474 4.474 10 H 0.094 0.906 11 C -0.198 4.198 12 N -0.533 5.533 13 Si 0.806 3.194 14 H -0.195 1.195 15 H -0.201 1.201 16 H -0.190 1.190 17 C 0.023 3.977 18 C 0.006 3.994 19 H 0.073 0.927 20 C -0.180 4.180 21 C -0.177 4.177 22 C -0.046 4.046 23 O -0.309 6.309 24 H 0.067 0.933 25 H 0.114 0.886 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.126 0.874 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.124 0.876 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.078 0.922 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.939 -2.263 -6.813 7.757 hybrid contribution 0.366 0.000 0.807 0.886 sum 3.305 -2.263 -6.006 7.219 Atomic orbital electron populations 1.22374 0.94652 1.03076 1.02631 1.22331 0.94459 0.92991 0.82671 1.21810 1.01915 0.91000 1.03848 1.22352 1.00708 1.02115 0.97275 1.86355 1.72101 1.24213 1.46231 1.18510 0.79770 0.80318 0.84560 1.90676 1.44358 1.71033 1.45792 1.42431 1.47414 1.08628 1.18725 1.19482 1.12938 1.28504 0.86493 0.90553 1.26164 0.98219 0.96472 0.98932 1.70027 1.22621 1.43729 1.16949 0.85162 0.78376 0.79073 0.76785 1.19540 1.20086 1.18982 1.21413 0.95036 0.79195 1.02011 1.23485 0.98380 0.95504 0.82050 0.92711 1.22892 1.02389 0.93008 0.99734 1.22881 1.01738 0.98071 0.95044 1.23592 0.96865 0.84554 0.99633 1.89376 1.80842 1.40111 1.20580 0.93338 0.88638 0.92720 0.91859 0.87356 0.92138 0.92562 0.88833 0.93134 0.91695 0.93666 0.87633 0.90979 0.88938 0.90050 0.88074 0.92209 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.26 8.37 71.98 0.60 -5.66 16 2 C 0.11 4.33 1.13 -10.79 -0.01 4.32 16 3 C -0.13 -3.73 8.85 71.98 0.64 -3.09 16 4 C -0.17 -6.03 8.37 71.98 0.60 -5.43 16 5 O -0.37 -18.87 9.04 -55.74 -0.50 -19.37 16 6 C 0.61 33.66 7.37 129.79 0.96 34.62 16 7 O -0.62 -34.58 11.02 20.61 0.23 -34.35 16 8 N -0.45 -24.69 2.49 -764.67 -1.90 -26.60 16 9 C -0.35 -19.31 8.87 84.01 0.75 -18.57 16 10 H 0.08 4.32 7.78 -2.91 -0.02 4.30 16 11 C 0.00 0.23 4.99 84.90 0.42 0.66 16 12 N -0.90 -48.63 11.49 21.66 0.25 -48.38 16 13 Si 0.98 41.00 29.60 68.60 2.03 43.03 16 14 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 15 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 16 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 17 C 0.15 7.36 4.70 86.38 0.41 7.76 16 18 C 0.06 2.73 3.53 31.10 0.11 2.84 16 19 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 20 C -0.14 -4.49 6.63 31.61 0.21 -4.28 16 21 C -0.14 -3.58 7.09 31.61 0.22 -3.36 16 22 C 0.03 0.94 7.62 72.48 0.55 1.49 16 23 O -0.39 -17.20 10.65 -148.98 -1.59 -18.79 16 24 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 26 H 0.05 2.40 5.88 -2.39 -0.01 2.39 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 2.45 5.88 -2.39 -0.01 2.44 16 31 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 32 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 34 H 0.04 2.38 7.33 -2.39 -0.02 2.37 16 35 H 0.11 5.48 5.58 -2.38 -0.01 5.47 16 36 H 0.07 2.30 7.87 -2.39 -0.02 2.28 16 37 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.10 2.62 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -68.94 327.62 4.97 -63.97 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 1.00 Total: 29.19 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 5.46 Total: 11.30 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -1.65 Total: -74.98 kcal Atomic # 8 Polarization: -70.65 SS G_CDS: -1.86 Total: -72.51 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -68.94 4.97 -63.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698424213.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.042 kcal (2) G-P(sol) polarization free energy of solvation -68.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds