Wall clock time and date at job start Mon Mar 30 2020 06:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.27087 * 2 1 4 4 C 1.53996 * 110.39175 * 122.13994 * 2 1 3 5 5 N 1.47900 * 107.05206 * 117.73573 * 4 2 1 6 6 C 1.46903 * 110.99997 * 145.84450 * 5 4 2 7 7 C 1.53004 * 109.47098 * 69.87143 * 6 5 4 8 8 O 1.42903 * 109.46746 * 65.00256 * 7 6 5 9 9 C 1.42903 * 113.99744 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46813 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00177 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99600 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99636 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00309 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47059 * 90.00120 * 14 12 10 16 16 H 1.48501 * 109.46999 * 210.00054 * 14 12 10 17 17 H 1.48506 * 109.47149 * 330.00046 * 14 12 10 18 18 C 1.48531 * 105.82422 * 25.33581 * 5 4 2 19 19 C 1.54588 * 110.31132 * 237.91358 * 2 1 3 20 20 H 1.09008 * 110.72134 * 337.55582 * 19 2 1 21 21 C 1.52997 * 110.72795 * 100.66699 * 19 2 1 22 22 C 1.50701 * 109.47212 * 184.99846 * 21 19 2 23 23 O 1.20826 * 119.99939 * 0.02562 * 22 21 19 24 24 O 1.34230 * 120.00046 * 179.97438 * 22 21 19 25 25 H 1.09000 * 109.46959 * 182.09129 * 1 2 3 26 26 H 1.09002 * 109.47680 * 302.08604 * 1 2 3 27 27 H 1.09000 * 109.47063 * 62.09465 * 1 2 3 28 28 H 1.08996 * 109.91980 * 237.09036 * 4 2 1 29 29 H 1.08997 * 109.92047 * 358.19068 * 4 2 1 30 30 H 1.08998 * 109.47637 * 189.87824 * 6 5 4 31 31 H 1.09001 * 109.46967 * 309.87616 * 6 5 4 32 32 H 1.08997 * 109.47221 * 185.00315 * 7 6 5 33 33 H 1.09005 * 109.47255 * 305.00823 * 7 6 5 34 34 H 1.08988 * 109.47137 * 300.00316 * 9 8 7 35 35 H 1.08999 * 109.46816 * 60.00360 * 9 8 7 36 36 H 0.96997 * 119.99546 * 180.02562 * 13 12 10 37 37 H 1.09003 * 110.67069 * 202.35851 * 18 5 4 38 38 H 1.09001 * 110.66906 * 79.22205 * 18 5 4 39 39 H 1.09002 * 109.47153 * 64.99848 * 21 19 2 40 40 H 1.09001 * 109.46832 * 305.00039 * 21 19 2 41 41 H 0.96691 * 117.00026 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0666 -0.7679 1.2222 5 7 2.8345 -1.9219 0.7065 6 6 3.9796 -2.2233 1.5761 7 6 3.4757 -2.7923 2.9040 8 8 2.8364 -4.0490 2.6716 9 6 2.3274 -4.6695 3.8540 10 6 1.6774 -5.9805 3.4933 11 1 1.6557 -6.3073 2.4641 12 6 1.1106 -6.7626 4.4771 13 7 0.5438 -7.9069 4.1624 14 14 1.1476 -6.1970 6.2570 15 1 -0.0658 -5.3910 6.5456 16 1 1.1795 -7.3815 7.1522 17 1 2.3585 -5.3690 6.4882 18 6 3.2871 -1.5321 -0.6534 19 6 2.0666 -0.7701 -1.2283 20 1 1.3168 -1.4658 -1.6051 21 6 2.5030 0.2004 -2.3276 22 6 2.9047 -0.5777 -3.5542 23 8 2.8474 -1.7845 -3.5496 24 8 3.3253 0.0702 -4.6520 25 1 -0.3633 -1.0270 0.0375 26 1 -0.3634 0.5459 0.8707 27 1 -0.3633 0.4810 -0.9082 28 1 2.7179 -0.1214 1.8104 29 1 1.2359 -1.1155 1.8364 30 1 4.6237 -2.9548 1.0883 31 1 4.5440 -1.3097 1.7631 32 1 4.3176 -2.9327 3.5819 33 1 2.7624 -2.0986 3.3492 34 1 3.1456 -4.8489 4.5512 35 1 1.5904 -4.0150 4.3193 36 1 0.1447 -8.4570 4.8545 37 1 3.5070 -2.4150 -1.2536 38 1 4.1571 -0.8779 -0.5965 39 1 3.3507 0.7892 -1.9771 40 1 1.6756 0.8658 -2.5743 41 1 3.5718 -0.4716 -5.4140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722692388.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:54 Heat of formation + Delta-G solvation = -141.232748 kcal Electronic energy + Delta-G solvation = -21136.972235 eV Core-core repulsion = 17823.688192 eV Total energy + Delta-G solvation = -3313.284043 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.66020 -39.22302 -36.83417 -36.31762 -34.11247 -32.50528 -31.72968 -29.59234 -27.59704 -26.77347 -25.35838 -22.63844 -21.75631 -21.49316 -20.66898 -19.69914 -18.20339 -16.92343 -16.75477 -16.22889 -15.91603 -15.79705 -15.09855 -14.60572 -14.29455 -14.05316 -13.77036 -13.49690 -13.35089 -12.85681 -12.70413 -12.52590 -12.45280 -11.88637 -11.85880 -11.71918 -11.66187 -11.13742 -10.99565 -10.88829 -10.78196 -10.67824 -10.63070 -10.54173 -10.30628 -9.79634 -9.08547 -8.75165 -8.36944 -8.15088 -6.04123 -4.02104 1.98895 2.76907 3.28863 3.35379 3.37255 4.01259 4.40159 4.41580 4.44463 4.61724 4.75303 4.88230 4.95286 5.13459 5.22400 5.26960 5.28249 5.42720 5.45014 5.48417 5.56029 5.63719 5.76078 5.88604 5.90308 5.94799 6.04358 6.09545 6.17423 6.22051 6.27831 6.33503 6.68097 7.07034 7.08525 7.23351 7.65723 7.68383 8.14309 8.77431 9.10133 9.55748 11.09184 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026572 B = 0.003568 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.483891 B = 7845.367715 C = 8048.582667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.074 0.926 4 C 0.038 3.962 5 N -0.498 5.498 6 C 0.053 3.947 7 C 0.065 3.935 8 O -0.364 6.364 9 C 0.168 3.832 10 C -0.514 4.514 11 H 0.083 0.917 12 C 0.071 3.929 13 N -0.897 5.897 14 Si 0.876 3.124 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.267 1.267 18 C 0.041 3.959 19 C -0.080 4.080 20 H 0.099 0.901 21 C -0.104 4.104 22 C 0.473 3.527 23 O -0.502 6.502 24 O -0.523 6.523 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.036 0.964 34 H -0.001 1.001 35 H -0.004 1.004 36 H 0.265 0.735 37 H 0.091 0.909 38 H 0.036 0.964 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.266 22.217 -12.136 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.093 0.907 4 C -0.090 4.090 5 N -0.222 5.222 6 C -0.076 4.076 7 C -0.014 4.014 8 O -0.282 6.282 9 C 0.093 3.907 10 C -0.552 4.552 11 H 0.101 0.899 12 C -0.131 4.131 13 N -0.536 5.536 14 Si 0.703 3.297 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.192 1.192 18 C -0.087 4.087 19 C -0.099 4.099 20 H 0.117 0.883 21 C -0.142 4.142 22 C 0.315 3.685 23 O -0.389 6.389 24 O -0.336 6.336 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.017 0.983 35 H 0.013 0.987 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.055 0.945 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 4.711 21.378 -11.884 24.908 hybrid contribution 0.714 0.692 0.851 1.309 sum 5.425 22.070 -11.032 25.263 Atomic orbital electron populations 1.21849 0.94002 1.02914 1.01345 1.22027 0.96795 0.98560 0.94074 0.90739 1.23020 0.98663 0.90964 0.96315 1.64716 1.20840 1.35232 1.01365 1.22303 0.92188 0.98906 0.94164 1.22280 0.95857 0.88349 0.94865 1.88025 1.75375 1.31603 1.33230 1.20574 0.92470 0.93445 0.84258 1.20916 1.35603 1.01385 0.97248 0.89876 1.24774 0.94883 0.94731 0.98683 1.69886 1.38044 1.12110 1.33549 0.86855 0.79009 0.78609 0.85277 1.20006 1.20869 1.19186 1.23328 0.94893 0.99466 0.91030 1.22062 0.98810 0.96094 0.92908 0.88283 1.21443 1.03857 0.98780 0.90098 1.23575 0.73416 0.87232 0.84289 1.90788 1.49363 1.15802 1.82962 1.84527 1.78065 1.45922 1.25046 0.91506 0.92492 0.92834 0.94163 0.89764 0.89922 0.94151 0.94268 0.94595 0.98303 0.98663 0.92476 0.89062 0.94543 0.87774 0.87437 0.73198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.89 37.16 0.33 -1.03 16 2 C -0.10 -0.94 3.16 -89.26 -0.28 -1.22 16 3 H 0.07 0.57 7.85 -51.93 -0.41 0.17 16 4 C 0.04 0.49 5.39 -2.75 -0.01 0.48 16 5 N -0.50 -7.70 5.21 -230.44 -1.20 -8.90 16 6 C 0.05 0.80 5.14 -3.82 -0.02 0.78 16 7 C 0.06 1.18 6.08 37.16 0.23 1.41 16 8 O -0.36 -8.92 10.27 -35.23 -0.36 -9.28 16 9 C 0.17 4.44 4.76 36.01 0.17 4.61 16 10 C -0.51 -15.84 9.99 -34.44 -0.34 -16.18 16 11 H 0.08 2.82 8.06 -52.49 -0.42 2.40 16 12 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 13 N -0.90 -28.40 13.96 55.43 0.77 -27.63 16 14 Si 0.88 21.93 27.47 -169.99 -4.67 17.27 16 15 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 18 C 0.04 0.52 5.44 -1.89 -0.01 0.51 16 19 C -0.08 -0.85 2.16 -88.76 -0.19 -1.04 16 20 H 0.10 1.26 7.61 -51.92 -0.39 0.87 16 21 C -0.10 -0.78 5.19 -27.88 -0.14 -0.93 16 22 C 0.47 4.46 8.16 36.01 0.29 4.76 16 23 O -0.50 -6.72 15.61 -18.75 -0.29 -7.02 16 24 O -0.52 -3.65 13.42 -39.26 -0.53 -4.18 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.04 0.46 7.57 -51.93 -0.39 0.07 16 29 H 0.08 1.22 7.66 -51.93 -0.40 0.82 16 30 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 31 H 0.04 0.50 7.82 -51.93 -0.41 0.09 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.04 0.63 7.37 -51.93 -0.38 0.24 16 34 H 0.00 -0.02 7.20 -51.94 -0.37 -0.39 16 35 H 0.00 -0.11 7.57 -51.93 -0.39 -0.50 16 36 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 37 H 0.09 1.37 7.41 -51.93 -0.38 0.98 16 38 H 0.04 0.40 7.82 -51.93 -0.41 0.00 16 39 H 0.10 0.62 7.99 -51.93 -0.42 0.20 16 40 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.41 1.35 9.10 45.56 0.41 1.76 16 LS Contribution 334.69 15.07 5.04 5.04 Total: -1.00 -36.14 334.69 -7.38 -43.52 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -6.06 Total: -3.01 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -0.08 Total: -5.81 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: -0.43 Total: -36.53 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -1.18 Total: -20.48 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.14 -7.38 -43.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722692388.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.711 kcal (2) G-P(sol) polarization free energy of solvation -36.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds