Wall clock time and date at job start Mon Mar 30 2020 06:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.27087 * 2 1 4 4 C 1.53996 * 110.39175 * 122.13994 * 2 1 3 5 5 N 1.47900 * 107.05206 * 117.73573 * 4 2 1 6 6 C 1.46903 * 110.99997 * 145.84450 * 5 4 2 7 7 C 1.53004 * 109.47098 * 69.87143 * 6 5 4 8 8 O 1.42903 * 109.46746 * 65.00256 * 7 6 5 9 9 C 1.42903 * 113.99744 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46813 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00177 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99600 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99636 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00309 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47059 * 90.00120 * 14 12 10 16 16 H 1.48501 * 109.46999 * 210.00054 * 14 12 10 17 17 H 1.48506 * 109.47149 * 330.00046 * 14 12 10 18 18 C 1.48531 * 105.82422 * 25.33581 * 5 4 2 19 19 C 1.54588 * 110.31132 * 237.91358 * 2 1 3 20 20 H 1.09008 * 110.72134 * 337.55582 * 19 2 1 21 21 C 1.52997 * 110.72795 * 100.66699 * 19 2 1 22 22 C 1.50701 * 109.47212 * 184.99846 * 21 19 2 23 23 O 1.20826 * 119.99939 * 0.02562 * 22 21 19 24 24 O 1.34230 * 120.00046 * 179.97438 * 22 21 19 25 25 H 1.09000 * 109.46959 * 182.09129 * 1 2 3 26 26 H 1.09002 * 109.47680 * 302.08604 * 1 2 3 27 27 H 1.09000 * 109.47063 * 62.09465 * 1 2 3 28 28 H 1.08996 * 109.91980 * 237.09036 * 4 2 1 29 29 H 1.08997 * 109.92047 * 358.19068 * 4 2 1 30 30 H 1.08998 * 109.47637 * 189.87824 * 6 5 4 31 31 H 1.09001 * 109.46967 * 309.87616 * 6 5 4 32 32 H 1.08997 * 109.47221 * 185.00315 * 7 6 5 33 33 H 1.09005 * 109.47255 * 305.00823 * 7 6 5 34 34 H 1.08988 * 109.47137 * 300.00316 * 9 8 7 35 35 H 1.08999 * 109.46816 * 60.00360 * 9 8 7 36 36 H 0.96997 * 119.99546 * 180.02562 * 13 12 10 37 37 H 1.09003 * 110.67069 * 202.35851 * 18 5 4 38 38 H 1.09001 * 110.66906 * 79.22205 * 18 5 4 39 39 H 1.09002 * 109.47153 * 64.99848 * 21 19 2 40 40 H 1.09001 * 109.46832 * 305.00039 * 21 19 2 41 41 H 0.96691 * 117.00026 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0666 -0.7679 1.2222 5 7 2.8345 -1.9219 0.7065 6 6 3.9796 -2.2233 1.5761 7 6 3.4757 -2.7923 2.9040 8 8 2.8364 -4.0490 2.6716 9 6 2.3274 -4.6695 3.8540 10 6 1.6774 -5.9805 3.4933 11 1 1.6557 -6.3073 2.4641 12 6 1.1106 -6.7626 4.4771 13 7 0.5438 -7.9069 4.1624 14 14 1.1476 -6.1970 6.2570 15 1 -0.0658 -5.3910 6.5456 16 1 1.1795 -7.3815 7.1522 17 1 2.3585 -5.3690 6.4882 18 6 3.2871 -1.5321 -0.6534 19 6 2.0666 -0.7701 -1.2283 20 1 1.3168 -1.4658 -1.6051 21 6 2.5030 0.2004 -2.3276 22 6 2.9047 -0.5777 -3.5542 23 8 2.8474 -1.7845 -3.5496 24 8 3.3253 0.0702 -4.6520 25 1 -0.3633 -1.0270 0.0375 26 1 -0.3634 0.5459 0.8707 27 1 -0.3633 0.4810 -0.9082 28 1 2.7179 -0.1214 1.8104 29 1 1.2359 -1.1155 1.8364 30 1 4.6237 -2.9548 1.0883 31 1 4.5440 -1.3097 1.7631 32 1 4.3176 -2.9327 3.5819 33 1 2.7624 -2.0986 3.3492 34 1 3.1456 -4.8489 4.5512 35 1 1.5904 -4.0150 4.3193 36 1 0.1447 -8.4570 4.8545 37 1 3.5070 -2.4150 -1.2536 38 1 4.1571 -0.8779 -0.5965 39 1 3.3507 0.7892 -1.9771 40 1 1.6756 0.8658 -2.5743 41 1 3.5718 -0.4716 -5.4140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722692388.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:53 Heat of formation + Delta-G solvation = -169.889840 kcal Electronic energy + Delta-G solvation = -21138.214900 eV Core-core repulsion = 17823.688192 eV Total energy + Delta-G solvation = -3314.526708 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.42946 -40.17375 -38.51260 -37.05986 -35.32738 -34.66578 -32.50182 -31.08525 -29.43014 -27.73391 -26.36826 -23.98478 -23.61884 -22.44770 -21.59034 -20.59172 -19.04585 -18.88733 -17.75327 -17.42477 -17.08492 -16.93365 -16.44267 -16.18158 -15.88910 -15.23576 -14.79135 -14.70873 -14.42906 -14.19566 -13.91628 -13.69096 -13.54513 -13.19073 -13.12295 -12.89860 -12.67259 -12.51718 -12.44639 -12.06607 -11.97214 -11.81371 -11.73028 -11.60382 -11.49855 -11.35387 -11.27851 -10.92291 -10.30335 -9.20625 -8.37311 -6.45352 1.28929 1.31629 1.35970 1.46950 2.18966 2.29348 2.94733 3.00224 3.14964 3.60901 3.63593 3.81026 4.14193 4.19506 4.22917 4.28148 4.40592 4.47737 4.53052 4.59976 4.61244 4.62274 4.68987 4.69981 4.78056 4.89235 4.95342 5.01899 5.08559 5.16116 5.19498 5.29846 5.44266 5.49944 5.70231 5.94103 6.07540 6.18611 6.59130 6.81799 7.05344 7.19482 8.80454 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026572 B = 0.003568 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.483891 B = 7845.367715 C = 8048.582667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 H 0.113 0.887 4 C 0.036 3.964 5 N -0.541 5.541 6 C 0.058 3.942 7 C 0.055 3.945 8 O -0.397 6.397 9 C 0.181 3.819 10 C -0.545 4.545 11 H 0.024 0.976 12 C 0.010 3.990 13 N -0.944 5.944 14 Si 0.960 3.040 15 H -0.259 1.259 16 H -0.272 1.272 17 H -0.245 1.245 18 C 0.044 3.956 19 C -0.075 4.075 20 H 0.065 0.935 21 C -0.096 4.096 22 C 0.476 3.524 23 O -0.554 6.554 24 O -0.515 6.515 25 H 0.032 0.968 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.011 0.989 35 H 0.007 0.993 36 H 0.273 0.727 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.145 26.093 -10.723 28.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 H 0.131 0.869 4 C -0.092 4.092 5 N -0.265 5.265 6 C -0.070 4.070 7 C -0.022 4.022 8 O -0.316 6.316 9 C 0.105 3.895 10 C -0.583 4.583 11 H 0.042 0.958 12 C -0.187 4.187 13 N -0.584 5.584 14 Si 0.781 3.219 15 H -0.183 1.183 16 H -0.196 1.196 17 H -0.168 1.168 18 C -0.084 4.084 19 C -0.095 4.095 20 H 0.084 0.916 21 C -0.134 4.134 22 C 0.320 3.680 23 O -0.445 6.445 24 O -0.328 6.328 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.029 0.971 35 H 0.025 0.975 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 5.607 25.290 -10.516 27.957 hybrid contribution 0.449 -0.558 0.246 0.757 sum 6.056 24.731 -10.270 27.455 Atomic orbital electron populations 1.21836 0.94097 1.01181 1.02884 1.22026 0.96651 0.99758 0.91909 0.86865 1.23045 0.97948 0.90619 0.97568 1.64573 1.21688 1.37622 1.02654 1.22255 0.92239 0.99971 0.92551 1.22665 0.96267 0.85885 0.97355 1.87981 1.76134 1.34582 1.32920 1.20271 0.92694 0.91561 0.85002 1.21180 1.37729 1.04358 0.95053 0.95769 1.25911 0.93521 0.94371 1.04937 1.70052 1.38652 1.13664 1.36008 0.85543 0.80419 0.78872 0.77061 1.18316 1.19647 1.16803 1.23253 0.96890 0.98840 0.89388 1.21935 0.97016 0.96213 0.94311 0.91632 1.21479 1.05962 0.97919 0.88010 1.24000 0.72196 0.86620 0.85150 1.90791 1.51718 1.18095 1.83882 1.84491 1.77362 1.45820 1.25166 0.94866 0.91551 0.90704 0.92005 0.92462 0.91422 0.90144 0.92465 0.93470 0.97113 0.97511 0.91786 0.92559 0.91912 0.84853 0.84494 0.71416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.89 71.98 0.64 -1.88 16 2 C -0.08 -1.45 3.16 -9.92 -0.03 -1.49 16 3 H 0.11 1.15 7.85 -2.38 -0.02 1.13 16 4 C 0.04 0.86 5.39 86.45 0.47 1.33 16 5 N -0.54 -16.72 5.21 -882.99 -4.60 -21.33 16 6 C 0.06 1.71 5.14 86.30 0.44 2.15 16 7 C 0.06 1.97 6.08 71.98 0.44 2.41 16 8 O -0.40 -19.94 10.27 -148.98 -1.53 -21.47 16 9 C 0.18 9.60 4.76 71.24 0.34 9.94 16 10 C -0.55 -35.13 9.99 25.60 0.26 -34.88 16 11 H 0.02 1.77 8.06 -2.91 -0.02 1.74 16 12 C 0.01 0.62 5.47 84.65 0.46 1.09 16 13 N -0.94 -61.65 13.96 21.45 0.30 -61.35 16 14 Si 0.96 44.80 27.47 68.60 1.88 46.69 16 15 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.24 -10.48 6.54 99.48 0.65 -9.82 16 18 C 0.04 1.11 5.44 86.65 0.47 1.58 16 19 C -0.08 -1.52 2.16 -9.59 -0.02 -1.55 16 20 H 0.07 1.76 7.61 -2.38 -0.02 1.74 16 21 C -0.10 -1.16 5.19 29.85 0.15 -1.00 16 22 C 0.48 8.38 8.16 71.24 0.58 8.97 16 23 O -0.55 -15.34 15.61 21.97 0.34 -15.00 16 24 O -0.51 -6.10 13.42 -51.41 -0.69 -6.79 16 25 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 1.20 7.57 -2.39 -0.02 1.19 16 29 H 0.06 1.66 7.66 -2.39 -0.02 1.64 16 30 H 0.07 2.16 8.11 -2.39 -0.02 2.14 16 31 H 0.08 1.72 7.82 -2.39 -0.02 1.70 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.05 1.57 7.37 -2.38 -0.02 1.55 16 34 H 0.01 0.56 7.20 -2.39 -0.02 0.54 16 35 H 0.01 0.36 7.57 -2.39 -0.02 0.34 16 36 H 0.27 16.26 8.31 -92.71 -0.77 15.49 16 37 H 0.06 1.80 7.41 -2.39 -0.02 1.79 16 38 H 0.06 1.24 7.82 -2.39 -0.02 1.22 16 39 H 0.13 0.91 7.99 -2.39 -0.02 0.89 16 40 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.42 2.17 9.10 -74.06 -0.67 1.50 16 Total: -1.00 -84.60 334.69 0.18 -84.42 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.28 Total: 8.16 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 4.20 Total: -13.32 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -4.30 Total: -82.68 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -1.88 Total: -43.26 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.69 kcal Total: -84.60 0.18 -84.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722692388.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.474 kcal (2) G-P(sol) polarization free energy of solvation -84.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds