Wall clock time and date at job start Mon Mar 30 2020 05:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86810 * 119.99813 * 2 1 4 4 H 1.48505 * 109.46987 * 270.00054 * 3 2 1 5 5 H 1.48501 * 109.46976 * 29.99874 * 3 2 1 6 6 H 1.48496 * 109.46837 * 150.00264 * 3 2 1 7 7 C 1.38944 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99913 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00253 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00104 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00123 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99865 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47306 * 180.02562 * 12 10 9 14 14 C 1.46896 * 111.00287 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47054 * 180.02562 * 14 13 12 16 16 C 1.53006 * 109.47044 * 180.02562 * 15 14 13 17 17 N 1.46898 * 109.46953 * 180.02562 * 16 15 14 18 18 C 1.47015 * 110.99642 * 293.62955 * 17 16 15 19 19 C 1.53098 * 109.25723 * 177.60943 * 18 17 16 20 20 O 1.43023 * 109.25952 * 56.85124 * 19 18 17 21 21 C 1.43014 * 113.73189 * 301.32868 * 20 19 18 22 22 C 1.47016 * 110.99994 * 169.99953 * 17 16 15 23 23 H 0.97002 * 119.99859 * 359.97438 * 1 2 3 24 24 H 0.96998 * 119.99813 * 0.02562 * 9 7 2 25 25 H 1.09005 * 109.47468 * 60.00223 * 12 10 9 26 26 H 1.09001 * 109.47135 * 299.99981 * 12 10 9 27 27 H 1.00901 * 110.99659 * 56.04041 * 13 12 10 28 28 H 1.08994 * 109.46940 * 59.99621 * 14 13 12 29 29 H 1.09000 * 109.47241 * 299.99959 * 14 13 12 30 30 H 1.08994 * 109.47742 * 59.99885 * 15 14 13 31 31 H 1.09009 * 109.47009 * 299.99739 * 15 14 13 32 32 H 1.08994 * 109.47199 * 59.99242 * 16 15 14 33 33 H 1.08996 * 109.46529 * 299.99637 * 16 15 14 34 34 H 1.08999 * 109.50673 * 297.54208 * 18 17 16 35 35 H 1.09004 * 109.50788 * 57.67624 * 18 17 16 36 36 H 1.08997 * 109.51060 * 296.91507 * 19 18 17 37 37 H 1.08998 * 109.54334 * 176.80599 * 19 18 17 38 38 H 1.08999 * 109.51224 * 298.73604 * 21 20 19 39 39 H 1.09005 * 109.53853 * 178.62625 * 21 20 19 40 40 H 1.09000 * 109.50136 * 302.32362 * 22 17 16 41 41 H 1.08996 * 109.50988 * 62.41201 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2439 -4.8629 -0.0022 13 7 2.1985 -5.9795 -0.0027 14 6 1.4982 -7.2708 -0.0026 15 6 2.5231 -8.4067 -0.0025 16 6 1.7937 -9.7517 -0.0031 17 7 2.7778 -10.8424 -0.0024 18 6 3.5401 -10.8649 -1.2592 19 6 4.5918 -11.9755 -1.1921 20 8 3.9440 -13.2233 -0.9294 21 6 3.1929 -13.2368 0.2875 22 6 2.1271 -12.1390 0.2354 23 1 -0.4850 0.8401 0.0004 24 1 0.3535 -2.3906 -0.0005 25 1 0.6169 -4.9201 -0.8920 26 1 0.6176 -4.9212 0.8880 27 1 2.8334 -5.9127 0.7787 28 1 0.8730 -7.3450 -0.8923 29 1 0.8736 -7.3454 0.8876 30 1 3.1480 -8.3323 0.8874 31 1 3.1481 -8.3323 -0.8926 32 1 1.1691 -9.8259 -0.8932 33 1 1.1686 -9.8263 0.8866 34 1 2.8632 -11.0545 -2.0922 35 1 4.0343 -9.9039 -1.4025 36 1 5.3005 -11.7580 -0.3931 37 1 5.1218 -12.0337 -2.1428 38 1 3.8608 -13.0559 1.1297 39 1 2.7105 -14.2070 0.4075 40 1 1.5897 -12.1081 1.1832 41 1 1.4270 -12.3487 -0.5732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037393570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:43 Heat of formation + Delta-G solvation = -79.983292 kcal Electronic energy + Delta-G solvation = -20201.675808 eV Core-core repulsion = 16923.340492 eV Total energy + Delta-G solvation = -3278.335316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.87282 -38.30253 -36.86479 -35.37639 -33.86221 -31.85762 -31.39893 -31.13286 -28.07658 -26.21917 -24.42321 -24.29061 -22.78033 -21.27760 -20.64243 -19.19129 -17.87024 -16.94564 -16.49947 -16.12692 -15.83717 -15.40559 -15.26762 -15.15447 -14.58919 -14.37088 -14.18974 -14.05304 -13.50496 -13.28191 -12.90495 -12.48902 -12.15423 -11.99926 -11.75252 -11.66099 -11.49355 -11.34562 -11.24917 -11.04761 -10.92760 -10.59739 -10.38853 -10.21122 -9.98495 -9.50259 -8.70901 -8.45029 -8.04099 -7.94903 -6.41006 -3.81798 3.18551 3.26935 3.32831 3.37844 3.57094 3.92016 4.12315 4.34229 4.55505 4.65746 4.69669 4.81824 4.88127 4.99221 5.12265 5.15881 5.20146 5.26279 5.27489 5.30592 5.37892 5.44488 5.52024 5.58041 5.62301 5.73347 5.81355 5.99570 6.09630 6.15130 6.29287 6.63705 6.66995 6.81070 7.24795 7.55954 7.68992 8.07293 8.62284 9.18690 9.55248 10.06847 10.76801 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.061024 B = 0.002336 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.725475 B =11982.512593 C =12288.248407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.670 5.670 14 C 0.061 3.939 15 C -0.113 4.113 16 C 0.058 3.942 17 N -0.537 5.537 18 C 0.013 3.987 19 C 0.063 3.937 20 O -0.388 6.388 21 C 0.064 3.936 22 C 0.017 3.983 23 H 0.271 0.729 24 H 0.392 0.608 25 H 0.085 0.915 26 H 0.043 0.957 27 H 0.349 0.651 28 H 0.068 0.932 29 H 0.026 0.974 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.740 -23.312 0.489 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.302 5.302 14 C -0.069 4.069 15 C -0.152 4.152 16 C -0.070 4.070 17 N -0.262 5.262 18 C -0.115 4.115 19 C -0.014 4.014 20 O -0.307 6.307 21 C -0.013 4.013 22 C -0.111 4.111 23 H 0.081 0.919 24 H 0.225 0.775 25 H 0.103 0.897 26 H 0.061 0.939 27 H 0.169 0.831 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.104 0.896 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.853 -23.204 0.075 23.278 hybrid contribution -1.334 1.007 0.406 1.720 sum 0.519 -22.198 0.481 22.209 Atomic orbital electron populations 1.69616 1.05939 1.28136 1.50703 1.25269 0.95649 0.99739 0.97363 0.85849 0.79212 0.80767 0.78406 1.20384 1.20947 1.19416 1.19706 0.93383 0.82244 1.47511 0.87919 1.41868 1.09202 1.04614 1.64440 1.19824 0.88392 0.84740 0.84409 1.90520 1.13777 1.87079 1.55344 1.21670 0.94379 0.91011 1.01145 1.60055 1.18861 0.99932 1.51362 1.21897 0.95626 0.89195 1.00211 1.21538 0.98380 0.91686 1.03559 1.22101 0.93319 0.90633 1.00980 1.62201 1.26438 1.03259 1.34321 1.22871 0.97092 1.00865 0.90650 1.22693 0.93959 0.82838 1.01906 1.87979 1.67095 1.34123 1.41480 1.22654 0.93002 0.98354 0.87329 1.22784 0.96639 0.89851 1.01873 0.91890 0.77460 0.89669 0.93918 0.83133 0.91339 0.95605 0.91057 0.90887 0.94551 0.90665 0.93934 0.88802 0.92133 0.88386 0.92216 0.88557 0.89627 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.20 29.55 -169.99 -5.02 16.17 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.43 9.68 -14.94 -0.14 -8.58 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.56 -14.52 5.29 -10.97 -0.06 -14.58 16 10 C 0.44 10.61 7.82 -10.99 -0.09 10.52 16 11 O -0.58 -16.12 15.78 5.55 0.09 -16.04 16 12 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 13 N -0.67 -11.07 6.13 -115.06 -0.70 -11.77 16 14 C 0.06 0.75 5.68 -3.83 -0.02 0.73 16 15 C -0.11 -1.23 5.41 -26.73 -0.14 -1.37 16 16 C 0.06 0.53 4.96 -3.82 -0.02 0.52 16 17 N -0.54 -5.02 4.73 -234.31 -1.11 -6.13 16 18 C 0.01 0.12 5.44 -3.71 -0.02 0.10 16 19 C 0.06 0.53 7.01 37.21 0.26 0.79 16 20 O -0.39 -3.84 10.83 -35.23 -0.38 -4.22 16 21 C 0.06 0.49 7.01 37.21 0.26 0.75 16 22 C 0.02 0.13 5.64 -3.71 -0.02 0.11 16 23 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 24 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 25 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.35 5.96 8.43 -39.29 -0.33 5.63 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.85 6.52 -51.92 -0.34 0.51 16 32 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 33 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 34 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.84 6.38 -51.93 -0.33 0.51 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 41 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -31.95 335.49 -8.21 -40.16 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -6.74 Total: 10.42 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -0.06 Total: 4.94 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -1.15 Total: -56.49 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.29 Total: -20.26 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.95 -8.21 -40.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037393570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.824 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds