Wall clock time and date at job start Mon Mar 30 2020 05:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86810 * 119.99813 * 2 1 4 4 H 1.48505 * 109.46987 * 270.00054 * 3 2 1 5 5 H 1.48501 * 109.46976 * 29.99874 * 3 2 1 6 6 H 1.48496 * 109.46837 * 150.00264 * 3 2 1 7 7 C 1.38944 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99913 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00253 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00104 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00123 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99865 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47306 * 180.02562 * 12 10 9 14 14 C 1.46896 * 111.00287 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47054 * 180.02562 * 14 13 12 16 16 C 1.53006 * 109.47044 * 180.02562 * 15 14 13 17 17 N 1.46898 * 109.46953 * 180.02562 * 16 15 14 18 18 C 1.47015 * 110.99642 * 293.62955 * 17 16 15 19 19 C 1.53098 * 109.25723 * 177.60943 * 18 17 16 20 20 O 1.43023 * 109.25952 * 56.85124 * 19 18 17 21 21 C 1.43014 * 113.73189 * 301.32868 * 20 19 18 22 22 C 1.47016 * 110.99994 * 169.99953 * 17 16 15 23 23 H 0.97002 * 119.99859 * 359.97438 * 1 2 3 24 24 H 0.96998 * 119.99813 * 0.02562 * 9 7 2 25 25 H 1.09005 * 109.47468 * 60.00223 * 12 10 9 26 26 H 1.09001 * 109.47135 * 299.99981 * 12 10 9 27 27 H 1.00901 * 110.99659 * 56.04041 * 13 12 10 28 28 H 1.08994 * 109.46940 * 59.99621 * 14 13 12 29 29 H 1.09000 * 109.47241 * 299.99959 * 14 13 12 30 30 H 1.08994 * 109.47742 * 59.99885 * 15 14 13 31 31 H 1.09009 * 109.47009 * 299.99739 * 15 14 13 32 32 H 1.08994 * 109.47199 * 59.99242 * 16 15 14 33 33 H 1.08996 * 109.46529 * 299.99637 * 16 15 14 34 34 H 1.08999 * 109.50673 * 297.54208 * 18 17 16 35 35 H 1.09004 * 109.50788 * 57.67624 * 18 17 16 36 36 H 1.08997 * 109.51060 * 296.91507 * 19 18 17 37 37 H 1.08998 * 109.54334 * 176.80599 * 19 18 17 38 38 H 1.08999 * 109.51224 * 298.73604 * 21 20 19 39 39 H 1.09005 * 109.53853 * 178.62625 * 21 20 19 40 40 H 1.09000 * 109.50136 * 302.32362 * 22 17 16 41 41 H 1.08996 * 109.50988 * 62.41201 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2439 -4.8629 -0.0022 13 7 2.1985 -5.9795 -0.0027 14 6 1.4982 -7.2708 -0.0026 15 6 2.5231 -8.4067 -0.0025 16 6 1.7937 -9.7517 -0.0031 17 7 2.7778 -10.8424 -0.0024 18 6 3.5401 -10.8649 -1.2592 19 6 4.5918 -11.9755 -1.1921 20 8 3.9440 -13.2233 -0.9294 21 6 3.1929 -13.2368 0.2875 22 6 2.1271 -12.1390 0.2354 23 1 -0.4850 0.8401 0.0004 24 1 0.3535 -2.3906 -0.0005 25 1 0.6169 -4.9201 -0.8920 26 1 0.6176 -4.9212 0.8880 27 1 2.8334 -5.9127 0.7787 28 1 0.8730 -7.3450 -0.8923 29 1 0.8736 -7.3454 0.8876 30 1 3.1480 -8.3323 0.8874 31 1 3.1481 -8.3323 -0.8926 32 1 1.1691 -9.8259 -0.8932 33 1 1.1686 -9.8263 0.8866 34 1 2.8632 -11.0545 -2.0922 35 1 4.0343 -9.9039 -1.4025 36 1 5.3005 -11.7580 -0.3931 37 1 5.1218 -12.0337 -2.1428 38 1 3.8608 -13.0559 1.1297 39 1 2.7105 -14.2070 0.4075 40 1 1.5897 -12.1081 1.1832 41 1 1.4270 -12.3487 -0.5732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037393570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:43 Heat of formation + Delta-G solvation = -105.933036 kcal Electronic energy + Delta-G solvation = -20202.801073 eV Core-core repulsion = 16923.340492 eV Total energy + Delta-G solvation = -3279.460581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.55563 -40.15799 -37.81371 -36.51412 -35.83159 -33.32317 -32.71941 -32.07091 -29.16459 -27.58748 -25.94307 -25.02583 -23.88103 -22.17503 -21.34552 -21.01918 -19.90859 -17.95755 -17.44302 -17.27039 -17.00911 -16.57229 -16.23052 -16.08535 -15.99057 -15.71189 -15.36430 -15.31418 -14.85840 -14.55335 -14.18293 -13.56354 -13.39613 -13.27037 -13.00587 -12.84908 -12.78314 -12.45565 -12.40233 -12.27304 -12.12188 -12.08873 -11.66592 -11.51870 -11.37706 -10.66880 -10.36625 -10.02866 -9.41549 -9.32605 -8.47561 -5.96544 1.37844 1.41608 1.54570 2.03761 2.28585 2.64863 2.92803 3.04226 3.19608 3.52974 3.90279 3.96822 4.01928 4.08158 4.19924 4.26163 4.31918 4.32475 4.45154 4.50074 4.54086 4.58318 4.60306 4.71280 4.75370 4.77545 4.82808 4.91382 5.02270 5.20783 5.27521 5.40154 5.87894 5.94713 5.98465 6.11512 6.17346 6.39971 6.59088 7.11463 7.54836 8.10178 8.69842 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.061024 B = 0.002336 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.725475 B =11982.512593 C =12288.248407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.624 6.624 12 C 0.065 3.935 13 N -0.686 5.686 14 C 0.064 3.936 15 C -0.104 4.104 16 C 0.064 3.936 17 N -0.547 5.547 18 C 0.015 3.985 19 C 0.062 3.938 20 O -0.407 6.407 21 C 0.060 3.940 22 C 0.017 3.983 23 H 0.278 0.722 24 H 0.397 0.603 25 H 0.104 0.896 26 H 0.067 0.933 27 H 0.344 0.656 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.110 0.890 38 H 0.060 0.940 39 H 0.115 0.885 40 H 0.100 0.900 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.113 -23.936 0.738 23.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.067 4.067 13 N -0.319 5.319 14 C -0.065 4.065 15 C -0.142 4.142 16 C -0.064 4.064 17 N -0.273 5.273 18 C -0.114 4.114 19 C -0.014 4.014 20 O -0.326 6.326 21 C -0.016 4.016 22 C -0.110 4.110 23 H 0.087 0.913 24 H 0.231 0.769 25 H 0.122 0.878 26 H 0.085 0.915 27 H 0.162 0.838 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.105 0.895 34 H 0.055 0.945 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.128 0.872 38 H 0.078 0.922 39 H 0.133 0.867 40 H 0.118 0.882 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.965 -23.853 0.322 23.875 hybrid contribution -1.067 1.136 0.335 1.594 sum -0.102 -22.717 0.657 22.727 Atomic orbital electron populations 1.69673 1.06827 1.29339 1.50271 1.26064 0.96586 1.02468 0.96233 0.84914 0.77881 0.76779 0.78673 1.19634 1.19444 1.19749 1.19670 0.92715 0.84049 1.49997 0.90351 1.41940 1.09361 1.04725 1.65017 1.20908 0.88266 0.86224 0.82206 1.90487 1.15920 1.87984 1.56688 1.21535 0.94024 0.88081 1.03099 1.60066 1.19235 1.01142 1.51443 1.21957 0.95888 0.87379 1.01251 1.21419 0.97922 0.92206 1.02668 1.22018 0.93114 0.89678 1.01584 1.62207 1.26743 1.03958 1.34376 1.22849 0.97136 1.00896 0.90481 1.22758 0.93750 0.82326 1.02592 1.87954 1.67468 1.34699 1.42462 1.22815 0.92898 0.99330 0.86596 1.22837 0.96633 0.89121 1.02457 0.91258 0.76922 0.87839 0.91477 0.83775 0.90603 0.93996 0.91745 0.92012 0.94387 0.89547 0.94461 0.89162 0.92219 0.87152 0.92183 0.86662 0.88178 0.94333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.84 13.05 21.66 0.28 -49.56 16 2 C -0.01 -0.74 5.50 84.92 0.47 -0.28 16 3 Si 0.99 43.13 29.55 68.60 2.03 45.15 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.33 -19.22 9.68 84.04 0.81 -18.41 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.57 -29.77 5.29 -306.99 -1.62 -31.39 16 10 C 0.44 21.10 7.82 87.66 0.69 21.79 16 11 O -0.62 -35.26 15.78 -3.06 -0.05 -35.31 16 12 C 0.07 2.25 6.17 85.56 0.53 2.78 16 13 N -0.69 -21.92 6.13 -517.94 -3.17 -25.09 16 14 C 0.06 1.46 5.68 86.30 0.49 1.95 16 15 C -0.10 -2.11 5.41 30.60 0.17 -1.95 16 16 C 0.06 1.07 4.96 86.31 0.43 1.50 16 17 N -0.55 -9.49 4.73 -895.22 -4.23 -13.72 16 18 C 0.01 0.25 5.44 86.31 0.47 0.72 16 19 C 0.06 1.01 7.01 72.01 0.50 1.51 16 20 O -0.41 -7.62 10.83 -148.98 -1.61 -9.23 16 21 C 0.06 0.84 7.01 72.01 0.50 1.34 16 22 C 0.02 0.25 5.64 86.31 0.49 0.73 16 23 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 24 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 25 H 0.10 3.23 8.14 -2.38 -0.02 3.21 16 26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.34 11.57 8.43 -89.69 -0.76 10.82 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.40 6.52 -2.38 -0.02 1.38 16 32 H 0.04 0.63 8.12 -2.39 -0.02 0.61 16 33 H 0.09 1.26 8.04 -2.39 -0.02 1.24 16 34 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 1.60 6.38 -2.38 -0.02 1.58 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.10 1.11 8.09 -2.39 -0.02 1.09 16 41 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -68.34 335.49 -3.30 -71.63 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -0.46 Total: 35.82 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 5.54 Total: 11.69 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -8.74 Total: -119.76 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -1.66 Total: -44.54 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -68.34 -3.30 -71.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037393570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.298 kcal (2) G-P(sol) polarization free energy of solvation -68.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds