Wall clock time and date at job start Mon Mar 30 2020 05:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47302 * 2 1 4 4 C 1.50698 * 109.47194 * 239.99816 * 2 1 3 5 5 H 1.07999 * 120.00266 * 239.99909 * 4 2 1 6 6 C 1.37875 * 119.99974 * 60.00595 * 4 2 1 7 7 N 1.31509 * 120.00070 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00123 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46911 * 59.99907 * 8 6 4 10 10 H 1.48501 * 109.47169 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47073 * 299.99742 * 8 6 4 12 12 N 1.46903 * 109.47059 * 120.00256 * 2 1 3 13 13 C 1.46901 * 111.00122 * 58.95082 * 12 2 1 14 14 C 1.46902 * 110.99644 * 295.00362 * 12 2 1 15 15 C 1.53005 * 109.46973 * 190.00109 * 14 12 2 16 16 H 1.09002 * 110.33140 * 305.69670 * 15 14 12 17 17 C 1.54481 * 110.37412 * 183.44826 * 15 14 12 18 18 C 1.54503 * 104.06445 * 217.08080 * 17 15 14 19 19 C 1.54482 * 104.06349 * 359.97438 * 18 17 15 20 20 H 1.08998 * 110.37438 * 265.04419 * 19 18 17 21 21 C 1.50700 * 110.37102 * 142.81345 * 19 18 17 22 22 O 1.21282 * 119.99634 * 245.00075 * 21 19 18 23 23 N 1.34767 * 120.00182 * 65.00398 * 21 19 18 24 24 N 1.36606 * 120.00188 * 180.02562 * 23 21 19 25 25 O 1.44428 * 110.46595 * 68.01027 * 15 14 12 26 26 H 1.09007 * 109.47010 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47367 * 299.99918 * 1 2 3 28 28 H 1.09002 * 109.47104 * 60.00456 * 1 2 3 29 29 H 0.96999 * 120.00356 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47276 * 296.05305 * 13 12 2 31 31 H 1.09002 * 109.46540 * 56.04827 * 13 12 2 32 32 H 1.08998 * 109.46934 * 176.04549 * 13 12 2 33 33 H 1.08997 * 109.47444 * 69.99788 * 14 12 2 34 34 H 1.09002 * 109.46899 * 309.99282 * 14 12 2 35 35 H 1.09007 * 110.50806 * 335.72406 * 17 15 14 36 36 H 1.08993 * 110.51288 * 98.42843 * 17 15 14 37 37 H 1.08994 * 110.51469 * 118.64075 * 18 17 15 38 38 H 1.09004 * 110.51074 * 241.35380 * 18 17 15 39 39 H 0.97002 * 120.00209 * 359.97438 * 23 21 19 40 40 H 1.00905 * 111.00076 * 179.97438 * 24 23 21 41 41 H 1.00905 * 110.99208 * 303.94813 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9430 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8281 -2.5198 -4.0082 10 1 1.8271 -0.4199 -5.2205 11 1 3.8076 -1.1190 -4.0077 12 7 2.0196 -0.6926 1.1994 13 6 1.5282 -2.0762 1.2460 14 6 1.6485 0.0391 2.4181 15 6 2.3787 -0.5663 3.6186 16 1 2.1868 -1.6377 3.6778 17 6 1.9378 0.1318 4.9242 18 6 3.2302 0.2008 5.7681 19 6 4.2990 -0.4643 4.8728 20 1 4.4028 -1.5195 5.1258 21 6 5.6217 0.2424 5.0216 22 8 6.1040 0.8315 4.0775 23 7 6.2686 0.2198 6.2036 24 7 7.4673 0.8609 6.3386 25 8 3.7978 -0.3140 3.5264 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7084 1.1609 -3.4844 30 1 0.4419 -2.0731 1.3346 31 1 1.8167 -2.5950 0.3318 32 1 1.9616 -2.5869 2.1058 33 1 0.5721 -0.0346 2.5725 34 1 1.9297 1.0869 2.3125 35 1 1.5648 1.1343 4.7141 36 1 1.1786 -0.4596 5.4360 37 1 3.4962 1.2373 5.9751 38 1 3.1100 -0.3566 6.6971 39 1 5.8827 -0.2511 6.9588 40 1 7.8293 0.7575 7.2748 41 1 8.1324 0.5316 5.6550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104108751.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:17 Heat of formation + Delta-G solvation = -40.813327 kcal Electronic energy + Delta-G solvation = -21652.043745 eV Core-core repulsion = 18375.406967 eV Total energy + Delta-G solvation = -3276.636779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.34993 -38.77473 -36.85140 -35.76738 -32.82226 -32.17177 -31.05176 -29.25099 -28.05376 -26.18807 -25.06235 -24.14409 -22.22759 -20.94741 -20.69216 -19.12218 -18.35622 -17.24922 -16.46097 -16.08973 -15.52337 -15.40683 -15.09158 -14.82679 -14.24676 -14.05112 -13.59155 -13.48025 -13.27973 -12.54223 -12.40446 -11.95008 -11.74962 -11.55656 -11.31357 -11.18017 -11.02626 -10.95851 -10.69464 -10.61948 -10.57121 -10.35277 -9.97278 -9.88979 -9.67552 -9.41466 -8.77886 -8.40786 -8.29125 -7.00310 -5.91555 -3.94404 2.47739 2.56110 3.39850 3.43496 3.47557 3.96749 4.33698 4.47734 4.53959 4.70708 4.80272 4.88591 5.11122 5.13507 5.39685 5.41925 5.48247 5.64040 5.75604 5.82834 6.00136 6.08822 6.22785 6.29529 6.42978 6.48444 6.73863 6.87816 6.95809 6.97430 7.09839 7.20194 7.33600 7.59404 7.79433 7.93073 8.24477 8.33031 8.48532 8.70922 9.11111 9.69954 11.15868 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.024812 B = 0.004211 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.214498 B = 6647.097337 C = 7321.373606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.211 3.789 3 H 0.040 0.960 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.276 1.276 12 N -0.527 5.527 13 C 0.033 3.967 14 C 0.061 3.939 15 C 0.079 3.921 16 H 0.070 0.930 17 C -0.150 4.150 18 C -0.143 4.143 19 C 0.059 3.941 20 H 0.090 0.910 21 C 0.518 3.482 22 O -0.496 6.496 23 N -0.583 5.583 24 N -0.602 5.602 25 O -0.314 6.314 26 H 0.029 0.971 27 H 0.006 0.994 28 H 0.088 0.912 29 H 0.260 0.740 30 H 0.014 0.986 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.399 0.601 40 H 0.355 0.645 41 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.456 -4.315 22.110 22.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.105 3.895 3 H 0.058 0.942 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.215 1.215 11 H -0.202 1.202 12 N -0.250 5.250 13 C -0.116 4.116 14 C -0.067 4.067 15 C 0.021 3.979 16 H 0.088 0.912 17 C -0.189 4.189 18 C -0.181 4.181 19 C -0.004 4.004 20 H 0.107 0.893 21 C 0.302 3.698 22 O -0.366 6.366 23 N -0.332 5.332 24 N -0.229 5.229 25 O -0.231 6.231 26 H 0.048 0.952 27 H 0.025 0.975 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.032 0.968 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.236 0.764 40 H 0.168 0.832 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.941 -3.064 20.808 21.605 hybrid contribution -0.352 -1.641 0.108 1.681 sum 4.590 -4.705 20.916 21.924 Atomic orbital electron populations 1.22411 1.01000 0.99234 1.00458 1.19312 0.89517 0.94717 0.86004 0.94227 1.21093 1.30334 1.12421 0.89704 0.91981 1.24918 0.95300 0.95154 0.98947 1.69874 1.37219 1.23123 1.23380 0.86587 0.79331 0.79488 0.82141 1.20455 1.21454 1.20198 1.62289 1.59345 1.01615 1.01779 1.22278 0.96380 0.91623 1.01291 1.22074 0.95612 0.99052 0.90010 1.23227 0.81265 0.98812 0.94630 0.91194 1.23003 0.97210 1.02727 0.95926 1.22910 0.94556 1.02217 0.98439 1.22697 0.91610 0.98853 0.87246 0.89268 1.20305 0.86119 0.81589 0.81766 1.90789 1.66365 1.41082 1.38324 1.44635 1.17804 1.56531 1.14209 1.59934 0.98294 1.54537 1.10103 1.89521 1.20797 1.91358 1.21428 0.95166 0.97498 0.89350 0.93046 0.96766 0.90680 0.94149 0.94129 0.90613 0.90062 0.90324 0.90127 0.90040 0.76439 0.83199 0.83799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 8.27 37.16 0.31 -3.93 16 2 C 0.21 5.55 2.34 -68.87 -0.16 5.38 16 3 H 0.04 1.16 8.03 -51.93 -0.42 0.75 16 4 C -0.50 -14.18 7.88 -34.44 -0.27 -14.45 16 5 H 0.06 1.78 6.77 -52.49 -0.36 1.42 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -26.34 11.32 55.43 0.63 -25.71 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 N -0.53 -11.97 4.74 -236.28 -1.12 -13.09 16 13 C 0.03 0.66 8.57 60.07 0.51 1.18 16 14 C 0.06 1.16 4.01 -3.82 -0.02 1.14 16 15 C 0.08 1.20 3.22 -25.95 -0.08 1.12 16 16 H 0.07 1.00 6.37 -51.93 -0.33 0.67 16 17 C -0.15 -1.66 6.63 -25.17 -0.17 -1.83 16 18 C -0.14 -1.35 6.61 -25.16 -0.17 -1.51 16 19 C 0.06 0.74 3.71 -27.11 -0.10 0.64 16 20 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 21 C 0.52 7.20 7.15 -10.99 -0.08 7.12 16 22 O -0.50 -9.83 16.77 -13.67 -0.23 -10.06 16 23 N -0.58 -5.22 6.45 31.22 0.20 -5.02 16 24 N -0.60 -5.11 10.03 60.35 0.61 -4.50 16 25 O -0.31 -5.65 10.60 -54.46 -0.58 -6.23 16 26 H 0.03 0.71 6.48 -51.92 -0.34 0.38 16 27 H 0.01 0.14 6.75 -51.93 -0.35 -0.21 16 28 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.01 0.27 6.51 -51.93 -0.34 -0.06 16 31 H 0.07 1.64 6.41 -51.93 -0.33 1.31 16 32 H 0.04 0.70 6.38 -51.93 -0.33 0.37 16 33 H 0.04 0.72 6.94 -51.93 -0.36 0.36 16 34 H 0.08 1.53 8.00 -51.93 -0.42 1.12 16 35 H 0.08 0.93 7.87 -51.93 -0.41 0.53 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.81 7.86 -51.93 -0.41 0.40 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.40 1.94 8.83 -185.15 -1.63 0.30 16 40 H 0.35 1.51 9.21 -181.36 -1.67 -0.16 16 41 H 0.35 3.06 9.00 -181.36 -1.63 1.43 16 LS Contribution 324.68 15.07 4.89 4.89 Total: -1.00 -36.28 324.68 -10.98 -47.26 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -10.04 Total: -1.04 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -0.32 Total: -3.60 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.31 Total: -48.32 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.81 Total: -16.29 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -36.28 -10.98 -47.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104108751.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.447 kcal (2) G-P(sol) polarization free energy of solvation -36.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds