Wall clock time and date at job start Mon Mar 30 2020 05:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47302 * 2 1 4 4 C 1.50698 * 109.47194 * 239.99816 * 2 1 3 5 5 H 1.07999 * 120.00266 * 239.99909 * 4 2 1 6 6 C 1.37875 * 119.99974 * 60.00595 * 4 2 1 7 7 N 1.31509 * 120.00070 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00123 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46911 * 59.99907 * 8 6 4 10 10 H 1.48501 * 109.47169 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47073 * 299.99742 * 8 6 4 12 12 N 1.46903 * 109.47059 * 120.00256 * 2 1 3 13 13 C 1.46901 * 111.00122 * 58.95082 * 12 2 1 14 14 C 1.46902 * 110.99644 * 295.00362 * 12 2 1 15 15 C 1.53005 * 109.46973 * 190.00109 * 14 12 2 16 16 H 1.09002 * 110.33140 * 305.69670 * 15 14 12 17 17 C 1.54481 * 110.37412 * 183.44826 * 15 14 12 18 18 C 1.54503 * 104.06445 * 217.08080 * 17 15 14 19 19 C 1.54482 * 104.06349 * 359.97438 * 18 17 15 20 20 H 1.08998 * 110.37438 * 265.04419 * 19 18 17 21 21 C 1.50700 * 110.37102 * 142.81345 * 19 18 17 22 22 O 1.21282 * 119.99634 * 245.00075 * 21 19 18 23 23 N 1.34767 * 120.00182 * 65.00398 * 21 19 18 24 24 N 1.36606 * 120.00188 * 180.02562 * 23 21 19 25 25 O 1.44428 * 110.46595 * 68.01027 * 15 14 12 26 26 H 1.09007 * 109.47010 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47367 * 299.99918 * 1 2 3 28 28 H 1.09002 * 109.47104 * 60.00456 * 1 2 3 29 29 H 0.96999 * 120.00356 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47276 * 296.05305 * 13 12 2 31 31 H 1.09002 * 109.46540 * 56.04827 * 13 12 2 32 32 H 1.08998 * 109.46934 * 176.04549 * 13 12 2 33 33 H 1.08997 * 109.47444 * 69.99788 * 14 12 2 34 34 H 1.09002 * 109.46899 * 309.99282 * 14 12 2 35 35 H 1.09007 * 110.50806 * 335.72406 * 17 15 14 36 36 H 1.08993 * 110.51288 * 98.42843 * 17 15 14 37 37 H 1.08994 * 110.51469 * 118.64075 * 18 17 15 38 38 H 1.09004 * 110.51074 * 241.35380 * 18 17 15 39 39 H 0.97002 * 120.00209 * 359.97438 * 23 21 19 40 40 H 1.00905 * 111.00076 * 179.97438 * 24 23 21 41 41 H 1.00905 * 110.99208 * 303.94813 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9430 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8281 -2.5198 -4.0082 10 1 1.8271 -0.4199 -5.2205 11 1 3.8076 -1.1190 -4.0077 12 7 2.0196 -0.6926 1.1994 13 6 1.5282 -2.0762 1.2460 14 6 1.6485 0.0391 2.4181 15 6 2.3787 -0.5663 3.6186 16 1 2.1868 -1.6377 3.6778 17 6 1.9378 0.1318 4.9242 18 6 3.2302 0.2008 5.7681 19 6 4.2990 -0.4643 4.8728 20 1 4.4028 -1.5195 5.1258 21 6 5.6217 0.2424 5.0216 22 8 6.1040 0.8315 4.0775 23 7 6.2686 0.2198 6.2036 24 7 7.4673 0.8609 6.3386 25 8 3.7978 -0.3140 3.5264 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7084 1.1609 -3.4844 30 1 0.4419 -2.0731 1.3346 31 1 1.8167 -2.5950 0.3318 32 1 1.9616 -2.5869 2.1058 33 1 0.5721 -0.0346 2.5725 34 1 1.9297 1.0869 2.3125 35 1 1.5648 1.1343 4.7141 36 1 1.1786 -0.4596 5.4360 37 1 3.4962 1.2373 5.9751 38 1 3.1100 -0.3566 6.6971 39 1 5.8827 -0.2511 6.9588 40 1 7.8293 0.7575 7.2748 41 1 8.1324 0.5316 5.6550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104108751.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:17 Heat of formation + Delta-G solvation = -70.837061 kcal Electronic energy + Delta-G solvation = -21653.345672 eV Core-core repulsion = 18375.406967 eV Total energy + Delta-G solvation = -3277.938706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.37500 -39.92129 -38.52437 -36.75009 -34.83911 -33.14684 -32.37178 -30.67171 -29.48480 -27.64590 -27.09177 -25.56514 -23.38388 -22.11183 -21.68482 -20.92664 -19.24532 -18.26971 -18.10518 -17.56389 -16.82102 -16.61973 -16.31434 -16.07608 -15.99911 -15.28440 -14.97704 -14.83584 -14.51847 -14.30934 -13.85905 -13.48051 -13.04590 -12.97611 -12.69820 -12.63275 -12.54395 -12.52182 -12.26619 -12.21067 -12.11431 -11.98456 -11.70046 -11.43875 -10.99824 -10.86817 -10.56631 -10.48878 -9.17401 -8.75070 -8.10159 -6.21025 1.40963 1.44372 1.51511 1.53888 1.68907 2.43329 3.00633 3.18568 3.39450 3.45440 3.71377 3.97875 4.03197 4.12447 4.22101 4.36577 4.46522 4.53871 4.64514 4.69558 4.78990 4.83098 4.88681 4.92669 4.95989 5.08268 5.15376 5.19091 5.27775 5.55781 5.63960 5.71973 5.80230 5.98374 6.23189 6.25982 6.53072 6.64752 6.80128 6.92999 7.47963 7.50659 8.96198 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.024812 B = 0.004211 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.214498 B = 6647.097337 C = 7321.373606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H -0.007 1.007 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.278 1.278 12 N -0.548 5.548 13 C 0.039 3.961 14 C 0.061 3.939 15 C 0.080 3.920 16 H 0.086 0.914 17 C -0.144 4.144 18 C -0.130 4.130 19 C 0.054 3.946 20 H 0.126 0.874 21 C 0.511 3.489 22 O -0.572 6.572 23 N -0.556 5.556 24 N -0.618 5.618 25 O -0.369 6.369 26 H 0.036 0.964 27 H 0.027 0.973 28 H 0.060 0.940 29 H 0.261 0.739 30 H 0.022 0.978 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.070 0.930 38 H 0.133 0.867 39 H 0.423 0.577 40 H 0.379 0.621 41 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.081 -6.243 24.869 25.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.107 3.893 3 H 0.011 0.989 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.203 1.203 12 N -0.271 5.271 13 C -0.109 4.109 14 C -0.067 4.067 15 C 0.022 3.978 16 H 0.104 0.896 17 C -0.182 4.182 18 C -0.168 4.168 19 C -0.008 4.008 20 H 0.143 0.857 21 C 0.296 3.704 22 O -0.448 6.448 23 N -0.304 5.304 24 N -0.248 5.248 25 O -0.288 6.288 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.133 0.867 37 H 0.089 0.911 38 H 0.151 0.849 39 H 0.265 0.735 40 H 0.196 0.804 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.567 -5.028 23.684 24.639 hybrid contribution -0.167 -1.007 -0.631 1.200 sum 4.399 -6.035 23.053 24.233 Atomic orbital electron populations 1.22164 0.99775 0.99405 1.00063 1.19037 0.90329 0.92447 0.87470 0.98883 1.21375 1.30546 1.12470 0.91093 0.92710 1.25722 0.95419 0.95855 1.01896 1.70012 1.37968 1.24214 1.24038 0.85577 0.78475 0.78879 0.78479 1.19159 1.20747 1.20324 1.62149 1.60172 1.02882 1.01901 1.22239 0.96988 0.90028 1.01609 1.22130 0.97047 0.97469 0.90069 1.23237 0.80289 0.99723 0.94551 0.89590 1.23003 0.98842 1.02243 0.94134 1.22941 0.92139 1.02293 0.99446 1.23050 0.91299 1.00897 0.85587 0.85667 1.20774 0.86693 0.80900 0.81983 1.90756 1.68321 1.44696 1.41050 1.44338 1.17526 1.54993 1.13567 1.59813 0.98168 1.55061 1.11783 1.89469 1.22167 1.91912 1.25208 0.94466 0.95374 0.92148 0.92975 0.95941 0.92967 0.90809 0.92744 0.93519 0.91224 0.86721 0.91097 0.84883 0.73536 0.80424 0.83846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.76 8.27 71.98 0.60 -7.17 16 2 C 0.21 11.73 2.34 44.17 0.10 11.83 16 3 H -0.01 -0.42 8.03 -2.39 -0.02 -0.44 16 4 C -0.52 -30.34 7.88 25.60 0.20 -30.14 16 5 H 0.05 3.22 6.77 -2.91 -0.02 3.20 16 6 C 0.01 0.54 5.30 84.65 0.45 0.99 16 7 N -0.92 -55.66 11.32 21.45 0.24 -55.41 16 8 Si 0.96 46.01 29.54 68.60 2.03 48.04 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 N -0.55 -25.29 4.74 -901.46 -4.27 -29.57 16 13 C 0.04 1.55 8.57 127.69 1.09 2.64 16 14 C 0.06 2.31 4.01 86.30 0.35 2.66 16 15 C 0.08 2.29 3.22 31.10 0.10 2.39 16 16 H 0.09 2.16 6.37 -2.39 -0.02 2.15 16 17 C -0.14 -2.72 6.63 31.61 0.21 -2.51 16 18 C -0.13 -1.95 6.61 31.61 0.21 -1.74 16 19 C 0.05 1.21 3.71 30.35 0.11 1.33 16 20 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 21 C 0.51 13.78 7.15 87.66 0.63 14.41 16 22 O -0.57 -23.55 16.77 15.35 0.26 -23.29 16 23 N -0.56 -8.69 6.45 -173.54 -1.12 -9.81 16 24 N -0.62 -9.54 10.03 37.02 0.37 -9.17 16 25 O -0.37 -13.20 10.60 -130.59 -1.38 -14.59 16 26 H 0.04 1.76 6.48 -2.38 -0.02 1.75 16 27 H 0.03 1.24 6.75 -2.39 -0.02 1.22 16 28 H 0.06 3.38 6.07 -2.39 -0.01 3.36 16 29 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 30 H 0.02 0.83 6.51 -2.39 -0.02 0.82 16 31 H 0.05 2.27 6.41 -2.39 -0.02 2.26 16 32 H 0.07 2.38 6.38 -2.39 -0.02 2.37 16 33 H 0.05 1.87 6.94 -2.39 -0.02 1.85 16 34 H 0.05 1.99 8.00 -2.39 -0.02 1.97 16 35 H 0.07 1.48 7.87 -2.38 -0.02 1.46 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.22 7.86 -2.39 -0.02 1.21 16 38 H 0.13 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.42 2.46 8.83 -215.49 -1.90 0.56 16 40 H 0.38 2.33 9.21 -210.55 -1.94 0.39 16 41 H 0.35 5.91 9.00 -210.55 -1.90 4.01 16 Total: -1.00 -84.89 324.68 -4.49 -89.39 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -4.66 Total: 9.72 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 4.05 Total: -5.31 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -4.78 Total: -103.96 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -1.13 Total: -37.87 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -84.89 -4.49 -89.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104108751.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.551 kcal (2) G-P(sol) polarization free energy of solvation -84.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds