Wall clock time and date at job start Mon Mar 30 2020 05:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47218 * 2 1 4 4 N 1.46902 * 109.46652 * 119.99909 * 2 1 3 5 5 C 1.53005 * 109.46926 * 239.99698 * 2 1 3 6 6 H 1.08999 * 109.50613 * 65.08918 * 5 2 1 7 7 C 1.53099 * 109.53747 * 185.19941 * 5 2 1 8 8 N 1.47009 * 109.25535 * 176.80571 * 7 5 2 9 9 C 1.46900 * 111.00029 * 177.60465 * 8 7 5 10 10 C 1.50705 * 109.46923 * 189.67943 * 9 8 7 11 11 O 1.21273 * 120.00272 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99722 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00124 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47574 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99441 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00075 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00481 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99886 * 179.73007 * 16 14 13 19 19 H 1.48494 * 109.47225 * 180.27306 * 18 16 14 20 20 H 1.48506 * 109.46866 * 300.27330 * 18 16 14 21 21 H 1.48498 * 109.47306 * 60.26614 * 18 16 14 22 22 C 1.47017 * 110.75536 * 301.38046 * 8 7 5 23 23 C 1.53098 * 109.25615 * 58.61618 * 22 8 7 24 24 O 1.43015 * 109.50496 * 305.00252 * 5 2 1 25 25 H 1.09001 * 109.47082 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47273 * 300.00504 * 1 2 3 27 27 H 1.09005 * 109.47028 * 60.00334 * 1 2 3 28 28 H 1.00900 * 110.99959 * 296.04058 * 4 2 1 29 29 H 1.00901 * 111.00294 * 59.99918 * 4 2 1 30 30 H 1.09002 * 109.51088 * 56.87037 * 7 5 2 31 31 H 1.09002 * 109.50160 * 296.73468 * 7 5 2 32 32 H 1.08995 * 109.47298 * 69.68236 * 9 8 7 33 33 H 1.09001 * 109.46989 * 309.68019 * 9 8 7 34 34 H 0.97003 * 120.00052 * 0.02562 * 12 10 9 35 35 H 1.09009 * 109.47230 * 60.00355 * 13 12 10 36 36 H 1.08998 * 109.47557 * 300.00847 * 13 12 10 37 37 H 0.97005 * 119.99656 * 359.72741 * 17 16 14 38 38 H 1.08996 * 109.51095 * 178.54839 * 22 8 7 39 39 H 1.08995 * 109.50251 * 298.63965 * 22 8 7 40 40 H 1.09005 * 109.50907 * 63.08512 * 23 22 8 41 41 H 1.09001 * 109.50818 * 183.17533 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0400 -0.7213 -1.2493 6 1 1.7533 -0.1581 -2.1373 7 6 3.5654 -0.8365 -1.1872 8 7 4.0420 -1.5970 -2.3515 9 6 5.5085 -1.6822 -2.3603 10 6 5.9705 -2.2545 -3.6757 11 8 5.1582 -2.5608 -4.5225 12 7 7.2865 -2.4250 -3.9113 13 6 7.7357 -2.9818 -5.1896 14 6 9.2402 -3.0691 -5.1988 15 1 9.8052 -2.7428 -4.3381 16 6 9.8952 -3.5655 -6.3058 17 7 9.2072 -3.9633 -7.3536 18 14 11.7604 -3.6666 -6.3200 19 1 12.2160 -4.2255 -7.6181 20 1 12.3312 -2.3077 -6.1385 21 1 12.2169 -4.5468 -5.2145 22 6 3.4363 -2.9363 -2.3824 23 6 1.9122 -2.8001 -2.4324 24 8 1.4701 -2.0316 -1.3102 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.7502 -0.1989 2.0373 29 1 1.6960 -1.6479 1.2228 30 1 3.8545 -1.3530 -0.2719 31 1 4.0063 0.1603 -1.1983 32 1 5.8398 -2.3276 -1.5469 33 1 5.9310 -0.6861 -2.2289 34 1 7.9363 -2.1797 -3.2341 35 1 7.4039 -2.3370 -6.0035 36 1 7.3135 -3.9781 -5.3205 37 1 8.2385 -3.9111 -7.3461 38 1 3.7829 -3.4723 -3.2659 39 1 3.7240 -3.4865 -1.4866 40 1 1.6217 -2.2972 -3.3549 41 1 1.4570 -3.7900 -2.3986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132818987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:09 Heat of formation + Delta-G solvation = -83.411313 kcal Electronic energy + Delta-G solvation = -21294.593734 eV Core-core repulsion = 18016.109768 eV Total energy + Delta-G solvation = -3278.483966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.06836 -38.73380 -36.18687 -35.26146 -34.32339 -32.44283 -30.68568 -29.34422 -28.91847 -26.82469 -24.91936 -24.02991 -22.59679 -21.22133 -20.18896 -19.71476 -17.52697 -16.96073 -16.48716 -16.12409 -15.88567 -15.33434 -14.97230 -14.55836 -14.39949 -14.21505 -13.94140 -13.78083 -13.55960 -13.18408 -13.09273 -12.62230 -12.37452 -12.24448 -11.86910 -11.78543 -11.50591 -11.24159 -11.04531 -11.00629 -10.77772 -10.54306 -10.16674 -9.77370 -9.14079 -8.95953 -8.78439 -8.68721 -8.24873 -7.98545 -6.52437 -4.26041 3.27722 3.36975 3.39015 3.52902 3.58274 3.65607 4.23318 4.26122 4.45936 4.56952 4.79339 4.99448 5.01559 5.14329 5.18291 5.23686 5.26620 5.30296 5.43499 5.47947 5.53449 5.54937 5.56283 5.66908 5.83614 5.93247 6.00323 6.09989 6.82772 6.87214 6.97697 7.03461 7.14009 7.19577 7.21563 7.32442 7.65661 8.25966 8.46605 8.70834 8.99458 9.47863 10.87744 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.050650 B = 0.003130 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.682498 B = 8942.934671 C = 9266.808140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.097 3.903 3 H 0.091 0.909 4 N -0.841 5.841 5 C 0.102 3.898 6 H 0.067 0.933 7 C 0.032 3.968 8 N -0.521 5.521 9 C 0.038 3.962 10 C 0.500 3.500 11 O -0.541 6.541 12 N -0.710 5.710 13 C 0.242 3.758 14 C -0.624 4.624 15 H 0.057 0.943 16 C 0.022 3.978 17 N -0.902 5.902 18 Si 1.076 2.924 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.287 1.287 22 C 0.014 3.986 23 C 0.070 3.930 24 O -0.385 6.385 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.338 0.662 29 H 0.347 0.653 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.392 0.608 35 H 0.017 0.983 36 H 0.015 0.985 37 H 0.272 0.728 38 H 0.107 0.893 39 H 0.035 0.965 40 H 0.060 0.940 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.517 7.084 17.012 23.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.016 4.016 3 H 0.109 0.891 4 N -0.370 5.370 5 C 0.044 3.956 6 H 0.085 0.915 7 C -0.096 4.096 8 N -0.246 5.246 9 C -0.093 4.093 10 C 0.284 3.716 11 O -0.420 6.420 12 N -0.359 5.359 13 C 0.120 3.880 14 C -0.662 4.662 15 H 0.075 0.925 16 C -0.184 4.184 17 N -0.536 5.536 18 Si 0.903 3.097 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.213 1.213 22 C -0.114 4.114 23 C -0.007 4.007 24 O -0.304 6.304 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.151 0.849 29 H 0.161 0.839 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.225 0.775 35 H 0.035 0.965 36 H 0.033 0.967 37 H 0.083 0.917 38 H 0.125 0.875 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.331 6.714 14.849 21.054 hybrid contribution -1.511 0.197 2.035 2.542 sum -14.842 6.912 16.883 23.518 Atomic orbital electron populations 1.22516 0.96975 1.02824 1.01820 1.21446 0.92909 0.97521 0.89697 0.89107 1.58892 1.67089 1.07156 1.03911 1.22160 0.91829 0.84569 0.97092 0.91473 1.22673 0.95551 0.99245 0.92142 1.61845 1.05335 1.16529 1.40904 1.21980 0.88988 1.02295 0.96074 1.20369 0.83216 0.79335 0.88700 1.90605 1.53212 1.51159 1.46987 1.46276 1.05804 1.63512 1.20293 1.19139 0.95209 0.93235 0.80385 1.22068 0.90645 1.48627 1.04839 0.92498 1.25884 1.07498 0.93073 0.91904 1.70763 1.09527 1.43140 1.30212 0.83449 0.73448 0.76553 0.76262 1.20548 1.21266 1.21293 1.22945 0.95479 0.90265 1.02698 1.22614 0.93126 0.95880 0.89066 1.87868 1.68387 1.26353 1.47788 0.91619 0.92943 0.92147 0.84933 0.83926 0.92278 0.90246 0.92284 0.88230 0.77519 0.96546 0.96665 0.91699 0.87509 0.94697 0.92185 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 9.28 37.16 0.34 -1.02 16 2 C 0.10 0.80 3.30 -67.71 -0.22 0.58 16 3 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 4 N -0.84 -6.62 8.19 -4.67 -0.04 -6.66 16 5 C 0.10 1.11 2.69 -26.68 -0.07 1.04 16 6 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 7 C 0.03 0.38 4.77 -3.71 -0.02 0.36 16 8 N -0.52 -7.67 4.47 -235.75 -1.05 -8.73 16 9 C 0.04 0.56 5.45 -4.97 -0.03 0.54 16 10 C 0.50 9.99 7.54 -10.98 -0.08 9.90 16 11 O -0.54 -12.80 14.32 5.56 0.08 -12.72 16 12 N -0.71 -15.07 5.55 -61.47 -0.34 -15.41 16 13 C 0.24 6.41 4.74 -5.20 -0.02 6.38 16 14 C -0.62 -17.21 9.28 -34.44 -0.32 -17.53 16 15 H 0.06 1.49 7.60 -52.49 -0.40 1.09 16 16 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 17 N -0.90 -27.43 13.65 55.43 0.76 -26.67 16 18 Si 1.08 24.45 29.90 -169.99 -5.08 19.36 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 22 C 0.01 0.20 5.29 -3.71 -0.02 0.18 16 23 C 0.07 0.87 7.01 37.21 0.26 1.13 16 24 O -0.38 -4.59 9.18 -35.23 -0.32 -4.91 16 25 H 0.06 0.57 7.56 -51.93 -0.39 0.18 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.34 2.02 9.07 -39.29 -0.36 1.66 16 29 H 0.35 2.93 8.61 -39.29 -0.34 2.59 16 30 H 0.06 0.73 7.37 -51.93 -0.38 0.35 16 31 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 32 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 33 H 0.10 1.29 8.04 -51.93 -0.42 0.87 16 34 H 0.39 7.21 8.32 -40.82 -0.34 6.87 16 35 H 0.02 0.48 8.01 -51.92 -0.42 0.06 16 36 H 0.02 0.44 8.00 -51.93 -0.42 0.03 16 37 H 0.27 8.39 7.22 -40.82 -0.29 8.10 16 38 H 0.11 1.86 5.85 -51.93 -0.30 1.56 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 330.25 15.07 4.98 4.98 Total: -1.00 -32.53 330.25 -7.96 -40.49 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.65 Total: 8.18 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.28 Total: 2.09 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.68 Total: -57.47 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.24 Total: -17.63 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.08 Total: 19.36 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.53 -7.96 -40.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132818987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.924 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds