Wall clock time and date at job start Mon Mar 30 2020 05:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47218 * 2 1 4 4 N 1.46902 * 109.46652 * 119.99909 * 2 1 3 5 5 C 1.53005 * 109.46926 * 239.99698 * 2 1 3 6 6 H 1.08999 * 109.50613 * 65.08918 * 5 2 1 7 7 C 1.53099 * 109.53747 * 185.19941 * 5 2 1 8 8 N 1.47009 * 109.25535 * 176.80571 * 7 5 2 9 9 C 1.46900 * 111.00029 * 177.60465 * 8 7 5 10 10 C 1.50705 * 109.46923 * 189.67943 * 9 8 7 11 11 O 1.21273 * 120.00272 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99722 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00124 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47574 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99441 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00075 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00481 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99886 * 179.73007 * 16 14 13 19 19 H 1.48494 * 109.47225 * 180.27306 * 18 16 14 20 20 H 1.48506 * 109.46866 * 300.27330 * 18 16 14 21 21 H 1.48498 * 109.47306 * 60.26614 * 18 16 14 22 22 C 1.47017 * 110.75536 * 301.38046 * 8 7 5 23 23 C 1.53098 * 109.25615 * 58.61618 * 22 8 7 24 24 O 1.43015 * 109.50496 * 305.00252 * 5 2 1 25 25 H 1.09001 * 109.47082 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47273 * 300.00504 * 1 2 3 27 27 H 1.09005 * 109.47028 * 60.00334 * 1 2 3 28 28 H 1.00900 * 110.99959 * 296.04058 * 4 2 1 29 29 H 1.00901 * 111.00294 * 59.99918 * 4 2 1 30 30 H 1.09002 * 109.51088 * 56.87037 * 7 5 2 31 31 H 1.09002 * 109.50160 * 296.73468 * 7 5 2 32 32 H 1.08995 * 109.47298 * 69.68236 * 9 8 7 33 33 H 1.09001 * 109.46989 * 309.68019 * 9 8 7 34 34 H 0.97003 * 120.00052 * 0.02562 * 12 10 9 35 35 H 1.09009 * 109.47230 * 60.00355 * 13 12 10 36 36 H 1.08998 * 109.47557 * 300.00847 * 13 12 10 37 37 H 0.97005 * 119.99656 * 359.72741 * 17 16 14 38 38 H 1.08996 * 109.51095 * 178.54839 * 22 8 7 39 39 H 1.08995 * 109.50251 * 298.63965 * 22 8 7 40 40 H 1.09005 * 109.50907 * 63.08512 * 23 22 8 41 41 H 1.09001 * 109.50818 * 183.17533 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0400 -0.7213 -1.2493 6 1 1.7533 -0.1581 -2.1373 7 6 3.5654 -0.8365 -1.1872 8 7 4.0420 -1.5970 -2.3515 9 6 5.5085 -1.6822 -2.3603 10 6 5.9705 -2.2545 -3.6757 11 8 5.1582 -2.5608 -4.5225 12 7 7.2865 -2.4250 -3.9113 13 6 7.7357 -2.9818 -5.1896 14 6 9.2402 -3.0691 -5.1988 15 1 9.8052 -2.7428 -4.3381 16 6 9.8952 -3.5655 -6.3058 17 7 9.2072 -3.9633 -7.3536 18 14 11.7604 -3.6666 -6.3200 19 1 12.2160 -4.2255 -7.6181 20 1 12.3312 -2.3077 -6.1385 21 1 12.2169 -4.5468 -5.2145 22 6 3.4363 -2.9363 -2.3824 23 6 1.9122 -2.8001 -2.4324 24 8 1.4701 -2.0316 -1.3102 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.7502 -0.1989 2.0373 29 1 1.6960 -1.6479 1.2228 30 1 3.8545 -1.3530 -0.2719 31 1 4.0063 0.1603 -1.1983 32 1 5.8398 -2.3276 -1.5469 33 1 5.9310 -0.6861 -2.2289 34 1 7.9363 -2.1797 -3.2341 35 1 7.4039 -2.3370 -6.0035 36 1 7.3135 -3.9781 -5.3205 37 1 8.2385 -3.9111 -7.3461 38 1 3.7829 -3.4723 -3.2659 39 1 3.7240 -3.4865 -1.4866 40 1 1.6217 -2.2972 -3.3549 41 1 1.4570 -3.7900 -2.3986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132818987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:09 Heat of formation + Delta-G solvation = -111.237431 kcal Electronic energy + Delta-G solvation = -21295.800365 eV Core-core repulsion = 18016.109768 eV Total energy + Delta-G solvation = -3279.690597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23339 -40.18116 -37.16424 -36.41468 -36.08668 -34.46491 -31.60722 -30.69543 -29.55951 -28.60408 -26.25510 -25.04115 -24.55225 -22.20028 -21.37438 -21.09114 -19.40919 -18.01249 -17.80098 -17.28887 -16.88618 -16.62407 -16.58130 -15.78459 -15.61104 -15.50145 -15.28031 -15.01780 -14.70472 -14.35569 -14.28687 -14.18973 -13.80193 -13.67591 -13.11836 -12.98531 -12.73487 -12.53934 -12.43145 -12.34386 -11.91926 -11.85520 -11.50174 -11.03987 -10.90088 -10.76335 -10.49691 -9.96153 -9.63007 -9.32577 -8.80669 -6.56305 1.55479 1.63575 1.67206 1.83188 2.18284 2.55668 2.72574 2.92702 3.07254 3.60444 3.73791 3.84970 3.99289 4.05377 4.11410 4.24703 4.28021 4.34877 4.40506 4.44896 4.55609 4.63048 4.77516 4.81881 4.83198 4.93527 4.95004 4.97659 5.12721 5.33794 5.44769 5.52882 5.78164 5.95533 6.07591 6.14303 6.27659 6.30590 6.64918 6.80567 7.23612 7.41489 8.58702 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.050650 B = 0.003130 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.682498 B = 8942.934671 C = 9266.808140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.103 3.897 3 H 0.104 0.896 4 N -0.844 5.844 5 C 0.097 3.903 6 H 0.059 0.941 7 C 0.038 3.962 8 N -0.540 5.540 9 C 0.051 3.949 10 C 0.496 3.504 11 O -0.583 6.583 12 N -0.706 5.706 13 C 0.256 3.744 14 C -0.630 4.630 15 H 0.077 0.923 16 C -0.033 4.033 17 N -0.930 5.930 18 Si 1.130 2.870 19 H -0.287 1.287 20 H -0.263 1.263 21 H -0.263 1.263 22 C 0.017 3.983 23 C 0.075 3.925 24 O -0.384 6.384 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.350 0.650 29 H 0.344 0.656 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.129 0.871 34 H 0.409 0.591 35 H -0.018 1.018 36 H -0.018 1.018 37 H 0.254 0.746 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.048 0.952 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.745 8.361 19.702 25.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.010 4.010 3 H 0.122 0.878 4 N -0.374 5.374 5 C 0.039 3.961 6 H 0.077 0.923 7 C -0.089 4.089 8 N -0.266 5.266 9 C -0.079 4.079 10 C 0.283 3.717 11 O -0.463 6.463 12 N -0.357 5.357 13 C 0.132 3.868 14 C -0.668 4.668 15 H 0.095 0.905 16 C -0.232 4.232 17 N -0.566 5.566 18 Si 0.949 3.051 19 H -0.212 1.212 20 H -0.188 1.188 21 H -0.188 1.188 22 C -0.111 4.111 23 C -0.002 4.002 24 O -0.303 6.303 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.164 0.836 29 H 0.157 0.843 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.146 0.854 34 H 0.245 0.755 35 H 0.000 1.000 36 H 0.000 1.000 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.585 8.028 17.612 23.086 hybrid contribution -1.845 -0.177 1.217 2.217 sum -14.429 7.850 18.828 24.987 Atomic orbital electron populations 1.22459 0.96405 1.02193 1.02535 1.21410 0.93267 0.97640 0.88649 0.87788 1.58876 1.67128 1.07125 1.04320 1.22323 0.91352 0.84151 0.98273 0.92316 1.22712 0.96117 0.99320 0.90770 1.61822 1.05167 1.16766 1.42833 1.21919 0.89465 1.03758 0.92789 1.21369 0.82092 0.78051 0.90211 1.90597 1.54140 1.52583 1.48972 1.46047 1.07063 1.63669 1.18887 1.18628 0.95079 0.91030 0.82030 1.22444 0.91034 1.47834 1.05446 0.90538 1.27665 1.12233 0.91925 0.91352 1.70910 1.08490 1.45464 1.31758 0.82795 0.67536 0.78112 0.76683 1.21217 1.18785 1.18791 1.22825 0.96777 0.90240 1.01223 1.22555 0.91880 0.96851 0.88911 1.87883 1.68347 1.26842 1.47227 0.92885 0.91333 0.92343 0.83556 0.84285 0.92136 0.88867 0.89927 0.85355 0.75522 1.00039 1.00013 0.93720 0.90957 0.94075 0.93413 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 9.28 71.98 0.67 -1.62 16 2 C 0.10 1.45 3.30 44.92 0.15 1.60 16 3 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 4 N -0.84 -11.10 8.19 -168.67 -1.38 -12.48 16 5 C 0.10 1.95 2.69 30.63 0.08 2.03 16 6 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 7 C 0.04 0.82 4.77 86.32 0.41 1.23 16 8 N -0.54 -15.25 4.47 -899.78 -4.02 -19.27 16 9 C 0.05 1.43 5.45 85.56 0.47 1.90 16 10 C 0.50 19.89 7.54 87.66 0.66 20.55 16 11 O -0.58 -28.61 14.32 -3.01 -0.04 -28.66 16 12 N -0.71 -30.01 5.55 -466.78 -2.59 -32.59 16 13 C 0.26 14.04 4.74 85.63 0.41 14.45 16 14 C -0.63 -34.79 9.28 25.60 0.24 -34.55 16 15 H 0.08 3.85 7.60 -2.91 -0.02 3.83 16 16 C -0.03 -1.89 5.46 84.65 0.46 -1.43 16 17 N -0.93 -58.18 13.65 21.45 0.29 -57.88 16 18 Si 1.13 48.03 29.90 68.60 2.05 50.09 16 19 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 21 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 22 C 0.02 0.51 5.29 86.31 0.46 0.96 16 23 C 0.07 1.85 7.01 72.01 0.50 2.35 16 24 O -0.38 -8.68 9.18 -148.98 -1.37 -10.04 16 25 H 0.05 0.83 7.56 -2.39 -0.02 0.81 16 26 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.35 3.20 9.07 -89.69 -0.81 2.39 16 29 H 0.34 5.04 8.61 -89.69 -0.77 4.27 16 30 H 0.06 1.31 7.37 -2.39 -0.02 1.30 16 31 H 0.09 1.75 8.09 -2.39 -0.02 1.73 16 32 H 0.08 1.97 8.12 -2.39 -0.02 1.95 16 33 H 0.13 2.88 8.04 -2.39 -0.02 2.86 16 34 H 0.41 14.42 8.32 -92.71 -0.77 13.65 16 35 H -0.02 -1.12 8.01 -2.38 -0.02 -1.13 16 36 H -0.02 -1.09 8.00 -2.39 -0.02 -1.11 16 37 H 0.25 16.46 7.22 -92.70 -0.67 15.79 16 38 H 0.07 2.62 5.85 -2.39 -0.01 2.60 16 39 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.11 2.33 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -72.72 330.25 -3.76 -76.48 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: -1.21 Total: 26.89 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 4.50 Total: 7.47 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -7.70 Total: -122.23 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -1.41 Total: -38.70 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.05 Total: 50.09 kcal Total: -72.72 -3.76 -76.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132818987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.757 kcal (2) G-P(sol) polarization free energy of solvation -72.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds