Wall clock time and date at job start Mon Mar 30 2020 05:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.47109 * 2 1 4 4 C 1.47013 * 110.99912 * 293.95316 * 3 2 1 5 5 C 1.53099 * 109.25721 * 182.39062 * 4 3 2 6 6 O 1.43018 * 109.25972 * 303.15328 * 5 4 3 7 7 C 1.43013 * 113.73554 * 58.66903 * 6 5 4 8 8 H 1.09005 * 109.50886 * 61.30768 * 7 6 5 9 9 C 1.53002 * 109.50558 * 181.39741 * 7 6 5 10 10 N 1.46903 * 109.46967 * 299.99925 * 9 7 6 11 11 C 1.46896 * 110.99955 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46942 * 179.97438 * 11 10 9 13 13 O 1.21293 * 120.00282 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00075 * 179.97438 * 12 11 10 15 15 C 1.37104 * 120.00173 * 180.02562 * 14 12 11 16 16 H 1.08002 * 119.99666 * 359.97438 * 15 14 12 17 17 C 1.38945 * 120.00001 * 180.27893 * 15 14 12 18 18 N 1.31414 * 119.99893 * 359.72318 * 17 15 14 19 19 Si 1.86801 * 119.99957 * 179.72309 * 17 15 14 20 20 H 1.48494 * 109.47230 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46780 * 119.99924 * 19 17 15 22 22 H 1.48495 * 109.46909 * 239.99525 * 19 17 15 23 23 C 1.47009 * 111.00102 * 57.58877 * 3 2 1 24 24 H 1.09001 * 109.47067 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47175 * 299.99966 * 1 2 3 26 26 H 1.09007 * 109.47268 * 60.00147 * 1 2 3 27 27 H 1.09002 * 109.46741 * 240.00346 * 2 1 3 28 28 H 1.08994 * 109.47413 * 120.00495 * 2 1 3 29 29 H 1.09009 * 109.50791 * 62.45775 * 4 3 2 30 30 H 1.08997 * 109.54799 * 302.34718 * 4 3 2 31 31 H 1.09003 * 109.50988 * 183.21999 * 5 4 3 32 32 H 1.09000 * 109.50552 * 63.09132 * 5 4 3 33 33 H 1.08999 * 109.47423 * 180.02562 * 9 7 6 34 34 H 1.08991 * 109.47394 * 59.99568 * 9 7 6 35 35 H 1.00895 * 111.00244 * 56.04458 * 10 9 7 36 36 H 1.08994 * 109.47346 * 60.00149 * 11 10 9 37 37 H 1.08998 * 109.47279 * 299.99821 * 11 10 9 38 38 H 0.97000 * 120.00140 * 0.02562 * 14 12 11 39 39 H 0.97004 * 119.99542 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.50457 * 57.67016 * 23 3 2 41 41 H 1.09001 * 109.50601 * 297.54754 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6699 2.0674 -1.2543 5 6 2.2492 3.4845 -1.2366 6 8 1.7594 4.1801 -0.0870 7 6 2.0827 3.5433 1.1521 8 1 3.1659 3.4936 1.2641 9 6 1.4856 4.3458 2.3099 10 7 2.0396 5.7063 2.2998 11 6 1.4881 6.5075 3.4005 12 6 2.0788 7.8933 3.3581 13 8 2.8807 8.1846 2.4960 14 7 1.7160 8.8089 4.2782 15 6 2.2529 10.0698 4.2393 16 1 2.9670 10.3292 3.4716 17 6 1.8833 11.0120 5.1913 18 7 1.0149 10.6962 6.1256 19 14 2.6207 12.7276 5.1429 20 1 3.5658 12.8282 4.0019 21 1 1.5359 13.7281 4.9774 22 1 3.3470 12.9901 6.4113 23 6 1.5017 2.1269 1.1586 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 0.5853 2.1188 -1.3506 30 1 2.0844 1.5153 -2.0977 31 1 1.9442 4.0137 -2.1395 32 1 3.3372 3.4324 -1.1945 33 1 1.7327 3.8603 3.2540 34 1 0.4025 4.3938 2.1981 35 1 1.8802 6.1550 1.4103 36 1 1.7352 6.0366 4.3520 37 1 0.4049 6.5705 3.2968 38 1 1.0749 8.5758 4.9679 39 1 0.7565 11.3541 6.7900 40 1 1.7941 1.6178 2.0771 41 1 0.4145 2.1791 1.1010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134619357.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:56 Heat of formation + Delta-G solvation = -74.666056 kcal Electronic energy + Delta-G solvation = -20874.225348 eV Core-core repulsion = 17596.120605 eV Total energy + Delta-G solvation = -3278.104743 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.01641 -38.19479 -36.64822 -35.22633 -33.79733 -31.73034 -31.11777 -30.97078 -28.01911 -26.56556 -24.96332 -23.64013 -23.19795 -21.52049 -20.14177 -19.17358 -17.83914 -16.71776 -16.51895 -16.17694 -15.53869 -15.35687 -15.16465 -14.64735 -14.47759 -14.30633 -14.07906 -13.81508 -13.32257 -13.29673 -12.82396 -12.64309 -12.20798 -12.13502 -11.77162 -11.72368 -11.50958 -11.41398 -11.34279 -11.02156 -10.94611 -10.54949 -10.30497 -10.17631 -9.70530 -9.46981 -8.63400 -8.38390 -7.97141 -7.89840 -6.37075 -3.77506 3.19940 3.30001 3.37754 3.47792 3.69876 3.97513 4.14915 4.34805 4.60504 4.67260 4.79204 4.89622 4.93366 5.02152 5.04851 5.12046 5.20555 5.28950 5.30744 5.39374 5.44271 5.47153 5.56161 5.58137 5.66127 5.78499 5.85783 5.88778 6.01923 6.05481 6.33031 6.64882 6.66874 7.12542 7.31294 7.60174 7.81530 8.12247 8.67126 9.23274 9.60114 10.12086 10.80981 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.051394 B = 0.002869 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.681880 B = 9756.495226 C =10115.534013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.050 3.950 3 N -0.535 5.535 4 C 0.014 3.986 5 C 0.065 3.935 6 O -0.378 6.378 7 C 0.096 3.904 8 H 0.077 0.923 9 C 0.069 3.931 10 N -0.665 5.665 11 C 0.050 3.950 12 C 0.443 3.557 13 O -0.581 6.581 14 N -0.566 5.566 15 C -0.297 4.297 16 H 0.103 0.897 17 C 0.020 3.980 18 N -0.903 5.903 19 Si 0.929 3.071 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.022 3.978 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.032 0.968 35 H 0.358 0.642 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.392 0.608 39 H 0.270 0.730 40 H 0.086 0.914 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.962 -20.900 -10.007 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.078 4.078 3 N -0.259 5.259 4 C -0.114 4.114 5 C -0.012 4.012 6 O -0.296 6.296 7 C 0.038 3.962 8 H 0.095 0.905 9 C -0.061 4.061 10 N -0.299 5.299 11 C -0.083 4.083 12 C 0.228 3.772 13 O -0.465 6.465 14 N -0.203 5.203 15 C -0.426 4.426 16 H 0.121 0.879 17 C -0.181 4.181 18 N -0.545 5.545 19 Si 0.756 3.244 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.107 4.107 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.050 0.950 35 H 0.179 0.821 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.225 0.775 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.507 -20.584 -10.071 22.965 hybrid contribution -1.846 0.537 0.160 1.929 sum -3.353 -20.047 -9.910 22.613 Atomic orbital electron populations 1.22449 0.98126 1.02419 1.02314 1.22177 0.93007 0.89658 1.02956 1.62415 1.58879 1.02214 1.02374 1.22844 0.99425 0.96332 0.92770 1.22614 0.98765 0.90679 0.89133 1.87995 1.78187 1.49658 1.13779 1.22215 1.00016 0.89662 0.84312 0.90469 1.21927 0.96576 0.90905 0.96698 1.60041 1.60696 1.01359 1.07780 1.21678 0.96690 0.94022 0.95895 1.19820 0.86333 0.86099 0.84931 1.90528 1.37157 1.80307 1.38468 1.41873 1.40260 1.10968 1.27212 1.19761 1.23053 0.86831 1.12982 0.87881 1.25258 0.96928 1.00283 0.95606 1.69627 1.32755 1.35944 1.16184 0.85800 0.78750 0.81534 0.78266 1.19214 1.20812 1.20781 1.22806 0.98355 0.95081 0.94422 0.91985 0.92162 0.92511 0.90624 0.90421 0.93745 0.89853 0.88523 0.92169 0.89774 0.95005 0.82138 0.89657 0.93932 0.77484 0.91996 0.89561 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.34 9.20 37.16 0.34 -1.00 16 2 C 0.05 0.37 6.10 -3.82 -0.02 0.34 16 3 N -0.53 -5.05 4.94 -234.31 -1.16 -6.20 16 4 C 0.01 0.13 5.33 -3.71 -0.02 0.11 16 5 C 0.07 0.68 7.01 37.21 0.26 0.94 16 6 O -0.38 -5.14 9.81 -35.23 -0.35 -5.49 16 7 C 0.10 1.20 3.08 -26.68 -0.08 1.12 16 8 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 9 C 0.07 0.92 5.42 -3.82 -0.02 0.90 16 10 N -0.67 -11.71 6.12 -115.06 -0.70 -12.41 16 11 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 12 C 0.44 10.88 7.82 -10.98 -0.09 10.80 16 13 O -0.58 -16.43 15.78 5.55 0.09 -16.35 16 14 N -0.57 -14.77 5.29 -10.96 -0.06 -14.83 16 15 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 16 H 0.10 3.09 7.16 -52.49 -0.38 2.72 16 17 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 18 N -0.90 -25.02 13.05 55.50 0.72 -24.29 16 19 Si 0.93 21.43 29.55 -169.99 -5.02 16.41 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.02 0.22 4.41 -3.72 -0.02 0.20 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.45 6.42 -51.93 -0.33 0.12 16 26 H 0.06 0.42 6.61 -51.93 -0.34 0.07 16 27 H 0.08 0.49 8.11 -51.93 -0.42 0.07 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.41 6.59 -51.92 -0.34 0.07 16 30 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.36 6.85 7.83 -39.29 -0.31 6.54 16 36 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 39 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.48 6.40 -51.93 -0.33 0.14 16 LS Contribution 330.44 15.07 4.98 4.98 Total: -1.00 -32.23 330.44 -7.98 -40.20 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -6.56 Total: 11.82 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 0.08 Total: 6.16 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -1.19 Total: -57.74 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.26 Total: -21.83 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.23 -7.98 -40.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134619357.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.462 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds