Wall clock time and date at job start Mon Mar 30 2020 05:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.47109 * 2 1 4 4 C 1.47013 * 110.99912 * 293.95316 * 3 2 1 5 5 C 1.53099 * 109.25721 * 182.39062 * 4 3 2 6 6 O 1.43018 * 109.25972 * 303.15328 * 5 4 3 7 7 C 1.43013 * 113.73554 * 58.66903 * 6 5 4 8 8 H 1.09005 * 109.50886 * 61.30768 * 7 6 5 9 9 C 1.53002 * 109.50558 * 181.39741 * 7 6 5 10 10 N 1.46903 * 109.46967 * 299.99925 * 9 7 6 11 11 C 1.46896 * 110.99955 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46942 * 179.97438 * 11 10 9 13 13 O 1.21293 * 120.00282 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00075 * 179.97438 * 12 11 10 15 15 C 1.37104 * 120.00173 * 180.02562 * 14 12 11 16 16 H 1.08002 * 119.99666 * 359.97438 * 15 14 12 17 17 C 1.38945 * 120.00001 * 180.27893 * 15 14 12 18 18 N 1.31414 * 119.99893 * 359.72318 * 17 15 14 19 19 Si 1.86801 * 119.99957 * 179.72309 * 17 15 14 20 20 H 1.48494 * 109.47230 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46780 * 119.99924 * 19 17 15 22 22 H 1.48495 * 109.46909 * 239.99525 * 19 17 15 23 23 C 1.47009 * 111.00102 * 57.58877 * 3 2 1 24 24 H 1.09001 * 109.47067 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47175 * 299.99966 * 1 2 3 26 26 H 1.09007 * 109.47268 * 60.00147 * 1 2 3 27 27 H 1.09002 * 109.46741 * 240.00346 * 2 1 3 28 28 H 1.08994 * 109.47413 * 120.00495 * 2 1 3 29 29 H 1.09009 * 109.50791 * 62.45775 * 4 3 2 30 30 H 1.08997 * 109.54799 * 302.34718 * 4 3 2 31 31 H 1.09003 * 109.50988 * 183.21999 * 5 4 3 32 32 H 1.09000 * 109.50552 * 63.09132 * 5 4 3 33 33 H 1.08999 * 109.47423 * 180.02562 * 9 7 6 34 34 H 1.08991 * 109.47394 * 59.99568 * 9 7 6 35 35 H 1.00895 * 111.00244 * 56.04458 * 10 9 7 36 36 H 1.08994 * 109.47346 * 60.00149 * 11 10 9 37 37 H 1.08998 * 109.47279 * 299.99821 * 11 10 9 38 38 H 0.97000 * 120.00140 * 0.02562 * 14 12 11 39 39 H 0.97004 * 119.99542 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.50457 * 57.67016 * 23 3 2 41 41 H 1.09001 * 109.50601 * 297.54754 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6699 2.0674 -1.2543 5 6 2.2492 3.4845 -1.2366 6 8 1.7594 4.1801 -0.0870 7 6 2.0827 3.5433 1.1521 8 1 3.1659 3.4936 1.2641 9 6 1.4856 4.3458 2.3099 10 7 2.0396 5.7063 2.2998 11 6 1.4881 6.5075 3.4005 12 6 2.0788 7.8933 3.3581 13 8 2.8807 8.1846 2.4960 14 7 1.7160 8.8089 4.2782 15 6 2.2529 10.0698 4.2393 16 1 2.9670 10.3292 3.4716 17 6 1.8833 11.0120 5.1913 18 7 1.0149 10.6962 6.1256 19 14 2.6207 12.7276 5.1429 20 1 3.5658 12.8282 4.0019 21 1 1.5359 13.7281 4.9774 22 1 3.3470 12.9901 6.4113 23 6 1.5017 2.1269 1.1586 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 0.5853 2.1188 -1.3506 30 1 2.0844 1.5153 -2.0977 31 1 1.9442 4.0137 -2.1395 32 1 3.3372 3.4324 -1.1945 33 1 1.7327 3.8603 3.2540 34 1 0.4025 4.3938 2.1981 35 1 1.8802 6.1550 1.4103 36 1 1.7352 6.0366 4.3520 37 1 0.4049 6.5705 3.2968 38 1 1.0749 8.5758 4.9679 39 1 0.7565 11.3541 6.7900 40 1 1.7941 1.6178 2.0771 41 1 0.4145 2.1791 1.1010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134619357.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:56 Heat of formation + Delta-G solvation = -101.226075 kcal Electronic energy + Delta-G solvation = -20875.377077 eV Core-core repulsion = 17596.120605 eV Total energy + Delta-G solvation = -3279.256472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.86408 -40.10348 -37.54008 -36.54152 -35.80637 -33.30348 -32.68277 -31.62594 -29.21622 -27.71669 -26.46918 -24.89472 -24.08320 -22.48202 -21.14158 -20.84094 -19.90992 -17.96058 -17.66034 -17.22624 -16.91127 -16.42838 -16.24060 -16.01005 -15.87442 -15.72652 -15.12423 -14.92697 -14.68812 -14.51932 -14.25991 -13.53660 -13.41087 -13.20153 -13.11350 -12.86080 -12.79667 -12.71240 -12.41389 -12.39892 -12.21758 -12.10762 -11.62107 -11.51709 -11.43809 -10.60768 -10.34790 -10.01576 -9.35890 -9.30614 -8.46776 -5.95538 1.36907 1.41943 1.56635 2.04944 2.29338 2.67646 2.83534 3.03901 3.20386 3.51738 3.92097 3.94898 3.99490 4.12423 4.18292 4.24858 4.31831 4.34854 4.44365 4.49134 4.52088 4.55955 4.59357 4.68136 4.70762 4.82398 4.91475 4.99365 5.02263 5.06252 5.29533 5.41217 5.86616 5.94857 6.02609 6.09710 6.25729 6.38663 6.60433 7.12717 7.55942 8.11766 8.71013 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.051394 B = 0.002869 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.681880 B = 9756.495226 C =10115.534013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.050 3.950 3 N -0.547 5.547 4 C 0.020 3.980 5 C 0.059 3.941 6 O -0.403 6.403 7 C 0.098 3.902 8 H 0.060 0.940 9 C 0.071 3.929 10 N -0.681 5.681 11 C 0.064 3.936 12 C 0.437 3.563 13 O -0.624 6.624 14 N -0.573 5.573 15 C -0.334 4.334 16 H 0.077 0.923 17 C -0.014 4.014 18 N -0.921 5.921 19 Si 0.994 3.006 20 H -0.274 1.274 21 H -0.270 1.270 22 H -0.270 1.270 23 C 0.030 3.970 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.053 0.947 33 H 0.104 0.896 34 H 0.041 0.959 35 H 0.346 0.654 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.099 0.901 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.618 -22.048 -9.700 24.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.077 4.077 3 N -0.271 5.271 4 C -0.108 4.108 5 C -0.018 4.018 6 O -0.323 6.323 7 C 0.040 3.960 8 H 0.078 0.922 9 C -0.058 4.058 10 N -0.314 5.314 11 C -0.068 4.068 12 C 0.225 3.775 13 O -0.510 6.510 14 N -0.210 5.210 15 C -0.463 4.463 16 H 0.095 0.905 17 C -0.213 4.213 18 N -0.562 5.562 19 Si 0.817 3.183 20 H -0.199 1.199 21 H -0.195 1.195 22 H -0.195 1.195 23 C -0.098 4.098 24 H 0.093 0.907 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.059 0.941 35 H 0.165 0.835 36 H 0.127 0.873 37 H 0.083 0.917 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.188 -21.771 -9.741 23.951 hybrid contribution -1.633 0.847 0.029 1.840 sum -3.821 -20.924 -9.711 23.382 Atomic orbital electron populations 1.22400 0.97731 1.03044 1.01667 1.22244 0.93287 0.88396 1.03805 1.62423 1.59328 1.03147 1.02228 1.22800 0.99261 0.95424 0.93311 1.22793 0.98485 0.91874 0.88646 1.87956 1.78518 1.50995 1.14795 1.22166 0.99051 0.90980 0.83828 0.92216 1.22046 0.96967 0.88633 0.98151 1.60053 1.61708 1.02892 1.06727 1.21559 0.97398 0.90397 0.97450 1.20890 0.85279 0.87933 0.83411 1.90494 1.39034 1.81595 1.39924 1.41932 1.40510 1.10758 1.27849 1.19704 1.24249 0.88702 1.13654 0.90456 1.26054 0.96906 1.03636 0.94720 1.69681 1.32875 1.37321 1.16285 0.84858 0.78149 0.76933 0.78311 1.19880 1.19483 1.19488 1.22687 0.98119 0.93632 0.95380 0.90736 0.92853 0.93055 0.89599 0.89811 0.93879 0.88068 0.87321 0.92847 0.87807 0.94097 0.83524 0.87276 0.91698 0.76895 0.91263 0.88298 0.93417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 9.20 71.98 0.66 -1.55 16 2 C 0.05 0.62 6.10 86.30 0.53 1.15 16 3 N -0.55 -9.40 4.94 -895.22 -4.42 -13.82 16 4 C 0.02 0.33 5.33 86.31 0.46 0.79 16 5 C 0.06 1.20 7.01 72.02 0.50 1.71 16 6 O -0.40 -10.93 9.81 -148.98 -1.46 -12.39 16 7 C 0.10 2.37 3.08 30.63 0.09 2.46 16 8 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 9 C 0.07 1.79 5.42 86.30 0.47 2.26 16 10 N -0.68 -23.65 6.12 -517.95 -3.17 -26.82 16 11 C 0.06 2.32 6.17 85.56 0.53 2.85 16 12 C 0.44 21.77 7.82 87.66 0.69 22.45 16 13 O -0.62 -36.37 15.78 -3.07 -0.05 -36.42 16 14 N -0.57 -30.31 5.29 -306.98 -1.62 -31.94 16 15 C -0.33 -19.45 9.68 84.04 0.81 -18.63 16 16 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 17 C -0.01 -0.74 5.50 84.92 0.47 -0.27 16 18 N -0.92 -50.37 13.05 21.66 0.28 -50.08 16 19 Si 0.99 43.70 29.55 68.60 2.03 45.72 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 23 C 0.03 0.56 4.41 86.31 0.38 0.94 16 24 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.05 0.70 6.42 -2.39 -0.02 0.68 16 26 H 0.05 0.66 6.61 -2.38 -0.02 0.64 16 27 H 0.09 0.90 8.11 -2.39 -0.02 0.88 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.04 0.73 6.59 -2.38 -0.02 0.71 16 30 H 0.10 1.28 8.12 -2.39 -0.02 1.26 16 31 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.10 2.18 8.14 -2.39 -0.02 2.17 16 34 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.35 13.40 7.83 -89.70 -0.70 12.70 16 36 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 37 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 39 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 40 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.05 0.88 6.40 -2.39 -0.02 0.86 16 Total: -1.00 -69.79 330.44 -3.22 -73.01 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: -0.40 Total: 38.59 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 5.59 Total: 14.15 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -8.93 Total: -122.67 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -1.51 Total: -48.81 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -69.79 -3.22 -73.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134619357.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.214 kcal (2) G-P(sol) polarization free energy of solvation -69.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds