Wall clock time and date at job start Mon Mar 30 2020 05:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00075 * 2 1 4 4 C 1.50705 * 109.46819 * 269.99704 * 3 2 1 5 5 H 1.07989 * 120.00383 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99413 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99553 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00446 * 0.02562 * 6 4 3 9 9 H 1.48494 * 109.47497 * 89.99329 * 8 6 4 10 10 H 1.48497 * 109.47170 * 209.99642 * 8 6 4 11 11 H 1.48503 * 109.46931 * 329.99152 * 8 6 4 12 12 C 1.34777 * 119.99410 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99478 * 180.02562 * 12 2 1 14 14 C 1.50695 * 120.00180 * 359.97438 * 12 2 1 15 15 N 1.46898 * 109.46939 * 186.27359 * 14 12 2 16 16 C 1.47020 * 111.00332 * 190.00527 * 15 14 12 17 17 C 1.53090 * 109.25955 * 177.61105 * 16 15 14 18 18 O 1.43011 * 109.26087 * 56.84974 * 17 16 15 19 19 C 1.43020 * 113.73807 * 301.32736 * 18 17 16 20 20 H 1.08997 * 109.53918 * 298.71364 * 19 18 17 21 21 C 1.52998 * 109.50582 * 178.60492 * 19 18 17 22 22 N 1.46901 * 109.47053 * 65.22104 * 21 19 18 23 23 C 1.47014 * 110.99937 * 66.37309 * 15 14 12 24 24 H 1.08996 * 109.47637 * 270.00599 * 1 2 3 25 25 H 1.09002 * 109.47039 * 29.99919 * 1 2 3 26 26 H 1.09002 * 109.47493 * 149.99812 * 1 2 3 27 27 H 1.09002 * 109.47357 * 29.99521 * 3 2 1 28 28 H 1.08998 * 109.47372 * 149.99802 * 3 2 1 29 29 H 0.96996 * 119.99985 * 180.02562 * 7 6 4 30 30 H 1.09007 * 109.46969 * 66.27769 * 14 12 2 31 31 H 1.08998 * 109.47588 * 306.27807 * 14 12 2 32 32 H 1.08999 * 109.50268 * 297.55002 * 16 15 14 33 33 H 1.09003 * 109.50146 * 57.67361 * 16 15 14 34 34 H 1.09001 * 109.50663 * 176.78650 * 17 16 15 35 35 H 1.08994 * 109.50884 * 296.86819 * 17 16 15 36 36 H 1.09005 * 109.47258 * 305.21721 * 21 19 18 37 37 H 1.08997 * 109.46908 * 185.21953 * 21 19 18 38 38 H 1.00893 * 111.00703 * 56.04459 * 22 21 19 39 39 H 1.00906 * 110.99926 * 180.02562 * 22 21 19 40 40 H 1.09000 * 109.50585 * 62.45348 * 23 15 14 41 41 H 1.09001 * 109.50409 * 302.32728 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.3449 3.2577 -2.9128 8 14 3.7330 3.9292 -0.2530 9 1 5.1064 3.5081 0.1231 10 1 3.7479 5.3559 -0.6646 11 1 2.8269 3.7593 0.9113 12 6 2.1388 -1.1673 0.0005 13 8 3.3516 -1.1673 0.0010 14 6 1.3852 -2.4723 0.0017 15 7 2.3326 -3.5846 0.1534 16 6 1.6699 -4.8765 -0.0774 17 6 2.7033 -6.0007 0.0315 18 8 3.3354 -5.9379 1.3127 19 6 3.9915 -4.6935 1.5707 20 1 4.7793 -4.5372 0.8339 21 6 4.6016 -4.7188 2.9735 22 7 5.6646 -5.7313 3.0270 23 6 2.9711 -3.5560 1.4774 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1384 0.5138 29 1 3.8217 4.0836 -3.0900 30 1 0.8451 -2.5808 -0.9389 31 1 0.6773 -2.4824 0.8304 32 1 0.8907 -5.0245 0.6703 33 1 1.2262 -4.8851 -1.0730 34 1 2.2063 -6.9642 -0.0824 35 1 3.4528 -5.8832 -0.7510 36 1 3.8285 -4.9648 3.7016 37 1 5.0205 -3.7396 3.2052 38 1 6.3616 -5.5617 2.3174 39 1 6.0835 -5.7678 3.9443 40 1 2.2127 -3.6829 2.2500 41 1 3.4772 -2.6007 1.6168 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165673215.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:21 Heat of formation + Delta-G solvation = -58.831532 kcal Electronic energy + Delta-G solvation = -21733.676915 eV Core-core repulsion = 18456.258808 eV Total energy + Delta-G solvation = -3277.418107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.98967 -38.73720 -35.72597 -34.91433 -34.58725 -32.55756 -30.88889 -29.72965 -28.16188 -26.16589 -25.48423 -24.45018 -22.45341 -21.65658 -20.45746 -18.49057 -16.98249 -16.74673 -16.73181 -16.17239 -15.83944 -15.31242 -15.22559 -14.76720 -14.63405 -14.28080 -13.98494 -13.69592 -13.49308 -12.88443 -12.71514 -12.52474 -12.35570 -12.09067 -11.94262 -11.92239 -11.51745 -11.31152 -11.17582 -10.89860 -10.56269 -10.45192 -10.15673 -9.68434 -9.54132 -8.99468 -8.83255 -8.60321 -8.29651 -7.71538 -6.09876 -4.08690 3.27181 3.31171 3.33095 3.34628 3.46369 3.72296 4.00978 4.37911 4.41579 4.87061 4.90599 4.95709 5.02015 5.14490 5.18630 5.24138 5.28234 5.34224 5.42131 5.47051 5.51301 5.61366 5.69726 5.75537 5.80111 5.93425 6.00810 6.11646 6.62659 6.83173 6.89355 6.93665 6.97573 7.23679 7.27702 7.31944 7.59435 8.22177 8.45824 8.92238 8.98573 9.50231 11.03630 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.023523 B = 0.004482 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.049557 B = 6245.234495 C = 6843.466092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.600 5.600 3 C 0.217 3.783 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.507 3.493 13 O -0.523 6.523 14 C 0.040 3.960 15 N -0.517 5.517 16 C 0.017 3.983 17 C 0.065 3.935 18 O -0.369 6.369 19 C 0.100 3.900 20 H 0.068 0.932 21 C 0.070 3.930 22 N -0.843 5.843 23 C 0.023 3.977 24 H 0.044 0.956 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.029 0.971 28 H 0.036 0.964 29 H 0.265 0.735 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.341 0.659 39 H 0.340 0.660 40 H 0.036 0.964 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.375 -15.582 10.487 19.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.334 5.334 3 C 0.097 3.903 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.293 3.707 13 O -0.399 6.399 14 C -0.091 4.091 15 N -0.242 5.242 16 C -0.111 4.111 17 C -0.013 4.013 18 O -0.288 6.288 19 C 0.041 3.959 20 H 0.086 0.914 21 C -0.062 4.062 22 N -0.373 5.373 23 C -0.105 4.105 24 H 0.063 0.937 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.054 0.946 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.865 -16.028 9.992 19.279 hybrid contribution 0.096 1.724 1.019 2.005 sum -3.769 -14.304 11.011 18.441 Atomic orbital electron populations 1.21654 0.81047 1.03004 1.00344 1.47860 1.06221 1.07083 1.72199 1.19643 0.92372 0.79957 0.98368 1.21333 1.37010 1.07112 0.91277 0.90766 1.24863 0.95243 0.97347 0.95560 1.69899 1.41461 1.23564 1.18655 0.86843 0.80090 0.79780 0.82911 1.19927 1.21049 1.19128 1.20154 0.88248 0.84648 0.77664 1.90646 1.13622 1.86796 1.48790 1.22046 0.93900 0.90479 1.02708 1.61778 1.30963 1.01337 1.30108 1.22840 0.96486 0.89836 1.01912 1.22608 0.94711 0.97635 0.86320 1.88044 1.71145 1.34959 1.34627 1.22104 0.93920 0.83248 0.96624 0.91424 1.21742 0.94823 0.93558 0.96035 1.58584 1.16754 1.52463 1.09467 1.22858 0.97515 1.01245 0.88915 0.93746 0.90443 0.92315 0.95287 0.94643 0.92554 0.87983 0.92586 0.94118 0.89573 0.88563 0.92294 0.90378 0.93676 0.84656 0.84748 0.94595 0.87983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.12 59.85 0.61 1.85 16 2 N -0.60 -12.20 2.86 -182.95 -0.52 -12.72 16 3 C 0.22 5.28 4.23 -5.19 -0.02 5.26 16 4 C -0.53 -15.22 9.94 -34.44 -0.34 -15.56 16 5 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 8 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 9 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 12 C 0.51 10.20 7.24 -10.99 -0.08 10.12 16 13 O -0.52 -12.66 14.25 5.55 0.08 -12.58 16 14 C 0.04 0.59 3.91 -4.98 -0.02 0.57 16 15 N -0.52 -7.69 4.42 -235.75 -1.04 -8.73 16 16 C 0.02 0.20 5.64 -3.71 -0.02 0.18 16 17 C 0.06 0.73 7.01 37.20 0.26 0.99 16 18 O -0.37 -5.00 10.42 -35.23 -0.37 -5.37 16 19 C 0.10 1.32 2.98 -26.68 -0.08 1.24 16 20 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 21 C 0.07 0.78 6.45 -3.82 -0.02 0.75 16 22 N -0.84 -8.55 9.58 -10.37 -0.10 -8.65 16 23 C 0.02 0.33 4.58 -3.71 -0.02 0.32 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 26 H 0.06 0.71 6.62 -51.93 -0.34 0.37 16 27 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 28 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.10 1.36 7.61 -51.93 -0.40 0.97 16 31 H 0.06 0.70 7.90 -51.93 -0.41 0.29 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.87 8.09 -51.93 -0.42 0.45 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.34 3.21 8.99 -39.30 -0.35 2.86 16 39 H 0.34 2.69 9.08 -39.29 -0.36 2.33 16 40 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 1.72 6.10 -51.93 -0.32 1.40 16 LS Contribution 329.24 15.07 4.96 4.96 Total: -1.00 -35.09 329.24 -7.44 -42.53 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.71 Total: 2.93 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 0.16 Total: 7.74 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.89 Total: -57.06 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.29 Total: -17.95 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.09 -7.44 -42.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165673215.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.305 kcal (2) G-P(sol) polarization free energy of solvation -35.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds