Wall clock time and date at job start Mon Mar 30 2020 05:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00075 * 2 1 4 4 C 1.50705 * 109.46819 * 269.99704 * 3 2 1 5 5 H 1.07989 * 120.00383 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99413 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99553 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00446 * 0.02562 * 6 4 3 9 9 H 1.48494 * 109.47497 * 89.99329 * 8 6 4 10 10 H 1.48497 * 109.47170 * 209.99642 * 8 6 4 11 11 H 1.48503 * 109.46931 * 329.99152 * 8 6 4 12 12 C 1.34777 * 119.99410 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99478 * 180.02562 * 12 2 1 14 14 C 1.50695 * 120.00180 * 359.97438 * 12 2 1 15 15 N 1.46898 * 109.46939 * 186.27359 * 14 12 2 16 16 C 1.47020 * 111.00332 * 190.00527 * 15 14 12 17 17 C 1.53090 * 109.25955 * 177.61105 * 16 15 14 18 18 O 1.43011 * 109.26087 * 56.84974 * 17 16 15 19 19 C 1.43020 * 113.73807 * 301.32736 * 18 17 16 20 20 H 1.08997 * 109.53918 * 298.71364 * 19 18 17 21 21 C 1.52998 * 109.50582 * 178.60492 * 19 18 17 22 22 N 1.46901 * 109.47053 * 65.22104 * 21 19 18 23 23 C 1.47014 * 110.99937 * 66.37309 * 15 14 12 24 24 H 1.08996 * 109.47637 * 270.00599 * 1 2 3 25 25 H 1.09002 * 109.47039 * 29.99919 * 1 2 3 26 26 H 1.09002 * 109.47493 * 149.99812 * 1 2 3 27 27 H 1.09002 * 109.47357 * 29.99521 * 3 2 1 28 28 H 1.08998 * 109.47372 * 149.99802 * 3 2 1 29 29 H 0.96996 * 119.99985 * 180.02562 * 7 6 4 30 30 H 1.09007 * 109.46969 * 66.27769 * 14 12 2 31 31 H 1.08998 * 109.47588 * 306.27807 * 14 12 2 32 32 H 1.08999 * 109.50268 * 297.55002 * 16 15 14 33 33 H 1.09003 * 109.50146 * 57.67361 * 16 15 14 34 34 H 1.09001 * 109.50663 * 176.78650 * 17 16 15 35 35 H 1.08994 * 109.50884 * 296.86819 * 17 16 15 36 36 H 1.09005 * 109.47258 * 305.21721 * 21 19 18 37 37 H 1.08997 * 109.46908 * 185.21953 * 21 19 18 38 38 H 1.00893 * 111.00703 * 56.04459 * 22 21 19 39 39 H 1.00906 * 110.99926 * 180.02562 * 22 21 19 40 40 H 1.09000 * 109.50585 * 62.45348 * 23 15 14 41 41 H 1.09001 * 109.50409 * 302.32728 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.3449 3.2577 -2.9128 8 14 3.7330 3.9292 -0.2530 9 1 5.1064 3.5081 0.1231 10 1 3.7479 5.3559 -0.6646 11 1 2.8269 3.7593 0.9113 12 6 2.1388 -1.1673 0.0005 13 8 3.3516 -1.1673 0.0010 14 6 1.3852 -2.4723 0.0017 15 7 2.3326 -3.5846 0.1534 16 6 1.6699 -4.8765 -0.0774 17 6 2.7033 -6.0007 0.0315 18 8 3.3354 -5.9379 1.3127 19 6 3.9915 -4.6935 1.5707 20 1 4.7793 -4.5372 0.8339 21 6 4.6016 -4.7188 2.9735 22 7 5.6646 -5.7313 3.0270 23 6 2.9711 -3.5560 1.4774 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1384 0.5138 29 1 3.8217 4.0836 -3.0900 30 1 0.8451 -2.5808 -0.9389 31 1 0.6773 -2.4824 0.8304 32 1 0.8907 -5.0245 0.6703 33 1 1.2262 -4.8851 -1.0730 34 1 2.2063 -6.9642 -0.0824 35 1 3.4528 -5.8832 -0.7510 36 1 3.8285 -4.9648 3.7016 37 1 5.0205 -3.7396 3.2052 38 1 6.3616 -5.5617 2.3174 39 1 6.0835 -5.7678 3.9443 40 1 2.2127 -3.6829 2.2500 41 1 3.4772 -2.6007 1.6168 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165673215.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:21 Heat of formation + Delta-G solvation = -89.119376 kcal Electronic energy + Delta-G solvation = -21734.990294 eV Core-core repulsion = 18456.258808 eV Total energy + Delta-G solvation = -3278.731486 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.20133 -40.08066 -36.94087 -36.37502 -35.58317 -34.69863 -31.81818 -31.28767 -29.64997 -27.43002 -26.76395 -25.59021 -24.05419 -22.85056 -21.47342 -20.01118 -19.15491 -18.05488 -17.71313 -17.35072 -17.11088 -16.77161 -16.31803 -16.04804 -15.83881 -15.67849 -15.16996 -14.85898 -14.68724 -14.49896 -14.11385 -13.90341 -13.64034 -13.50102 -13.23003 -13.09541 -13.01698 -12.72087 -12.45328 -12.35728 -12.14036 -12.00105 -11.75147 -11.44896 -10.84657 -10.81523 -10.44203 -9.64310 -9.43032 -9.30930 -8.34868 -6.40011 1.31563 1.35716 1.44120 1.80012 2.17055 2.30060 2.74148 2.85457 2.99642 3.49464 3.72718 3.95374 3.97984 4.03392 4.11308 4.23339 4.27005 4.32448 4.42043 4.48687 4.56434 4.60639 4.65432 4.71517 4.80400 4.83007 4.93361 4.94806 4.97612 5.02571 5.45107 5.60170 5.79116 5.95610 6.09606 6.23855 6.29908 6.56519 6.61611 6.71454 7.21120 7.45152 8.82317 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.023523 B = 0.004482 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.049557 B = 6245.234495 C = 6843.466092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.610 5.610 3 C 0.226 3.774 4 C -0.536 4.536 5 H 0.027 0.973 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.275 1.275 11 H -0.237 1.237 12 C 0.496 3.504 13 O -0.576 6.576 14 C 0.053 3.947 15 N -0.545 5.545 16 C 0.021 3.979 17 C 0.060 3.940 18 O -0.379 6.379 19 C 0.104 3.896 20 H 0.045 0.955 21 C 0.074 3.926 22 N -0.849 5.849 23 C 0.030 3.970 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.050 0.950 28 H 0.017 0.983 29 H 0.268 0.732 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.125 0.875 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.047 0.953 38 H 0.344 0.656 39 H 0.353 0.647 40 H 0.049 0.951 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.077 -16.518 12.549 21.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.342 5.342 3 C 0.103 3.897 4 C -0.575 4.575 5 H 0.046 0.954 6 C -0.188 4.188 7 N -0.587 5.587 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.200 1.200 11 H -0.160 1.160 12 C 0.284 3.716 13 O -0.456 6.456 14 C -0.077 4.077 15 N -0.271 5.271 16 C -0.106 4.106 17 C -0.017 4.017 18 O -0.298 6.298 19 C 0.045 3.955 20 H 0.063 0.937 21 C -0.057 4.057 22 N -0.380 5.380 23 C -0.099 4.099 24 H 0.097 0.903 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.068 0.932 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.139 0.861 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.143 0.857 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.156 0.844 39 H 0.167 0.833 40 H 0.067 0.933 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.626 -16.995 12.068 21.590 hybrid contribution 0.604 1.929 0.268 2.039 sum -5.022 -15.067 12.337 20.110 Atomic orbital electron populations 1.21971 0.77612 1.04055 1.02892 1.47984 1.08450 1.05871 1.71935 1.19298 0.92679 0.82548 0.95175 1.21580 1.36782 1.06667 0.92480 0.95447 1.25872 0.95300 0.98975 0.98622 1.70055 1.42753 1.24507 1.21341 0.85696 0.79512 0.77743 0.79862 1.20286 1.19991 1.16017 1.21195 0.88049 0.86241 0.76123 1.90618 1.16193 1.87717 1.51034 1.21975 0.93467 0.87351 1.04941 1.61717 1.32075 1.02751 1.30511 1.22911 0.96533 0.87868 1.03322 1.22813 0.94580 0.99164 0.85158 1.88031 1.71270 1.34800 1.35657 1.22027 0.93156 0.83113 0.97187 0.93657 1.21677 0.95216 0.93983 0.94838 1.58570 1.16886 1.52034 1.10498 1.22713 0.97822 1.00008 0.89327 0.90270 0.91556 0.89251 0.93201 0.96462 0.92278 0.86098 0.89223 0.92559 0.87905 0.85680 0.93465 0.89856 0.93514 0.84383 0.83285 0.93259 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.07 10.12 127.77 1.29 3.36 16 2 N -0.61 -24.22 2.86 -851.13 -2.43 -26.65 16 3 C 0.23 10.93 4.23 85.64 0.36 11.29 16 4 C -0.54 -31.74 9.94 25.60 0.25 -31.49 16 5 H 0.03 1.82 8.06 -2.92 -0.02 1.79 16 6 C 0.01 0.60 5.47 84.65 0.46 1.07 16 7 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 8 Si 0.95 44.50 27.47 68.60 1.88 46.38 16 9 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 12 C 0.50 19.74 7.24 87.66 0.64 20.38 16 13 O -0.58 -28.75 14.25 -3.04 -0.04 -28.79 16 14 C 0.05 1.44 3.91 85.56 0.33 1.78 16 15 N -0.54 -15.39 4.42 -899.78 -3.98 -19.37 16 16 C 0.02 0.42 5.64 86.31 0.49 0.91 16 17 C 0.06 1.24 7.01 72.01 0.50 1.74 16 18 O -0.38 -9.69 10.42 -148.98 -1.55 -11.24 16 19 C 0.10 2.72 2.98 30.63 0.09 2.82 16 20 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 21 C 0.07 1.61 6.45 86.30 0.56 2.16 16 22 N -0.85 -16.46 9.58 -186.72 -1.79 -18.25 16 23 C 0.03 0.84 4.58 86.31 0.40 1.24 16 24 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.07 1.94 8.07 -2.39 -0.02 1.92 16 26 H 0.09 1.85 6.62 -2.39 -0.02 1.83 16 27 H 0.05 2.21 7.13 -2.39 -0.02 2.19 16 28 H 0.02 0.90 6.85 -2.39 -0.02 0.88 16 29 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 30 H 0.12 2.84 7.61 -2.38 -0.02 2.82 16 31 H 0.09 1.86 7.90 -2.39 -0.02 1.84 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.10 1.73 8.09 -2.39 -0.02 1.72 16 34 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.34 6.36 8.99 -89.70 -0.81 5.56 16 39 H 0.35 5.16 9.08 -89.69 -0.81 4.35 16 40 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.07 2.46 6.10 -2.39 -0.01 2.45 16 Total: -1.00 -79.91 329.24 -2.88 -82.78 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.65 Total: 19.84 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 5.38 Total: 15.26 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -7.90 Total: -124.23 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -1.60 Total: -40.04 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Total: -79.91 -2.88 -82.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165673215.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.336 kcal (2) G-P(sol) polarization free energy of solvation -79.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds