Wall clock time and date at job start Mon Mar 30 2020 04:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45195 * 109.46999 * 2 1 4 4 C 1.34234 * 117.00008 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99624 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99987 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.46999 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.47111 * 305.00093 * 7 6 4 9 9 O 1.42902 * 109.47141 * 64.99966 * 7 6 4 10 10 C 1.53008 * 109.47151 * 184.99768 * 7 6 4 11 11 N 1.46901 * 109.47065 * 179.97438 * 10 7 6 12 12 C 1.46891 * 110.99845 * 190.00145 * 11 10 7 13 13 C 1.50706 * 109.47305 * 162.97955 * 12 11 10 14 14 H 1.08003 * 119.99605 * 4.65523 * 13 12 11 15 15 C 1.37865 * 120.00261 * 184.65682 * 13 12 11 16 16 N 1.31516 * 120.00402 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00248 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46774 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47376 * 119.99736 * 17 15 13 20 20 H 1.48497 * 109.47235 * 240.00012 * 17 15 13 21 21 C 1.46905 * 110.99688 * 66.04688 * 11 10 7 22 22 C 1.53003 * 117.49444 * 126.97732 * 21 11 10 23 23 C 1.53002 * 117.49633 * 58.31676 * 21 11 10 24 24 H 1.08999 * 109.47113 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46778 * 300.00248 * 1 2 3 26 26 H 1.08996 * 109.46936 * 60.00356 * 1 2 3 27 27 H 1.08997 * 109.46778 * 239.99752 * 2 1 3 28 28 H 1.09004 * 109.46752 * 119.99923 * 2 1 3 29 29 H 1.09001 * 109.47277 * 59.99734 * 6 4 3 30 30 H 1.09007 * 109.47311 * 299.99863 * 6 4 3 31 31 H 0.96701 * 113.99582 * 59.99659 * 9 7 6 32 32 H 1.09000 * 109.46783 * 60.00204 * 10 7 6 33 33 H 1.08999 * 109.47071 * 300.00548 * 10 7 6 34 34 H 1.09004 * 109.47576 * 282.97759 * 12 11 10 35 35 H 1.09003 * 109.47282 * 42.98102 * 12 11 10 36 36 H 0.96998 * 120.00509 * 179.97438 * 16 15 13 37 37 H 1.09001 * 115.55265 * 272.64423 * 21 11 10 38 38 H 1.08998 * 117.49638 * 359.97438 * 22 21 11 39 39 H 1.08995 * 117.49639 * 145.01981 * 22 21 11 40 40 H 1.08997 * 117.49810 * 214.96954 * 23 21 11 41 41 H 1.08995 * 117.49945 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 6 5.4486 2.8573 -0.0010 8 1 5.7806 2.2501 0.8410 9 8 5.8946 2.2632 -1.2218 10 6 6.0332 4.2658 0.1240 11 7 7.5002 4.1888 0.1247 12 6 8.0950 5.4843 0.4791 13 6 9.5347 5.2840 0.8770 14 1 9.9864 4.3063 0.7959 15 6 10.2753 6.3487 1.3446 16 7 9.7255 7.5394 1.4429 17 14 12.0600 6.1006 1.8371 18 1 12.4367 4.6787 1.6330 19 1 12.9292 6.9682 1.0022 20 1 12.2328 6.4575 3.2682 21 6 8.0031 3.7155 -1.1719 22 6 9.0647 4.5669 -1.8712 23 6 7.6335 4.5304 -2.4130 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.5851 3.4698 0.8888 30 1 3.5845 3.4693 -0.8912 31 1 5.6344 2.7515 -2.0149 32 1 5.6930 4.7189 1.0552 33 1 5.7011 4.8730 -0.7181 34 1 8.0452 6.1541 -0.3795 35 1 7.5450 5.9208 1.3128 36 1 10.2464 8.2885 1.7722 37 1 8.0727 2.6334 -1.2826 38 1 9.3896 5.4783 -1.3693 39 1 9.8325 4.0449 -2.4422 40 1 7.4604 3.9843 -3.3403 41 1 7.0169 5.4173 -2.2675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166982708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:31 Heat of formation + Delta-G solvation = -104.429430 kcal Electronic energy + Delta-G solvation = -21414.952146 eV Core-core repulsion = 18103.264015 eV Total energy + Delta-G solvation = -3311.688131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.54937 -38.77788 -37.01787 -36.04759 -33.12456 -32.46290 -32.07418 -30.89583 -27.88808 -25.50735 -23.46401 -22.70964 -22.11820 -21.23107 -20.61683 -18.95708 -17.62686 -16.94954 -16.69070 -16.17770 -16.09128 -15.52095 -15.08149 -14.84261 -14.20296 -14.06718 -13.55537 -13.34552 -13.17996 -12.71341 -12.53181 -12.25393 -11.99099 -11.82710 -11.72736 -11.47261 -11.21176 -10.84069 -10.76803 -10.69110 -10.67670 -10.43440 -10.20190 -10.10594 -9.85360 -9.61332 -9.25506 -8.87437 -8.43093 -7.20092 -6.01687 -4.00624 2.23438 2.54981 3.32660 3.40567 3.46816 4.38755 4.51789 4.55243 4.65811 4.68650 4.71775 4.76520 5.01565 5.09225 5.16602 5.34569 5.37715 5.44910 5.49449 5.58222 5.64684 5.69800 5.79158 5.82195 5.89935 6.11925 6.22324 6.35078 6.42128 6.71016 6.86540 7.13130 7.22489 7.42900 7.76495 7.85256 7.92636 8.10531 8.23363 8.54203 9.07913 9.61965 11.08778 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.034972 B = 0.003610 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.444873 B = 7755.226301 C = 8019.852086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.366 6.366 4 C 0.460 3.540 5 O -0.488 6.488 6 C -0.148 4.148 7 C 0.127 3.873 8 H 0.111 0.889 9 O -0.539 6.539 10 C 0.027 3.973 11 N -0.501 5.501 12 C 0.186 3.814 13 C -0.492 4.492 14 H 0.065 0.935 15 C 0.052 3.948 16 N -0.901 5.901 17 Si 0.895 3.105 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.285 1.285 21 C 0.054 3.946 22 C -0.180 4.180 23 C -0.238 4.238 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.362 0.638 32 H 0.078 0.922 33 H 0.030 0.970 34 H -0.004 1.004 35 H 0.029 0.971 36 H 0.260 0.740 37 H 0.119 0.881 38 H 0.130 0.870 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.539 -9.508 -5.072 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.284 6.284 4 C 0.302 3.698 5 O -0.374 6.374 6 C -0.186 4.186 7 C 0.067 3.933 8 H 0.129 0.871 9 O -0.343 6.343 10 C -0.102 4.102 11 N -0.223 5.223 12 C 0.061 3.939 13 C -0.531 4.531 14 H 0.084 0.916 15 C -0.148 4.148 16 N -0.542 5.542 17 Si 0.723 3.277 18 H -0.196 1.196 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.055 4.055 22 C -0.217 4.217 23 C -0.277 4.277 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.132 0.868 30 H 0.123 0.877 31 H 0.208 0.792 32 H 0.096 0.904 33 H 0.048 0.952 34 H 0.013 0.987 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.136 0.864 38 H 0.148 0.852 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.893 -10.437 -4.213 19.474 hybrid contribution 0.393 0.998 -0.672 1.265 sum -15.500 -9.439 -4.884 18.793 Atomic orbital electron populations 1.21803 0.92795 1.02856 1.03456 1.22977 0.95181 0.80525 1.02583 1.86506 1.25145 1.32180 1.84555 1.23658 0.80248 0.92970 0.72899 1.90721 1.60074 1.42850 1.43719 1.22276 0.98702 0.91280 1.06357 1.21799 0.87279 0.95047 0.89177 0.87087 1.86737 1.79160 1.53579 1.14784 1.22719 0.91474 0.94913 1.01080 1.62111 1.02318 1.32059 1.25839 1.19887 0.95320 0.83561 0.95138 1.21167 0.95096 0.95423 1.41383 0.91639 1.24973 0.98616 0.95185 0.96042 1.69962 1.36635 1.00111 1.47458 0.86472 0.84832 0.78304 0.78058 1.19569 1.21203 1.21145 1.22667 1.01253 0.96724 0.84856 1.23557 0.90701 1.05016 1.02391 1.23347 1.01116 1.03810 0.99422 0.90356 0.91505 0.91545 0.91328 0.91310 0.86820 0.87679 0.79157 0.90398 0.95219 0.98653 0.95266 0.93060 0.86371 0.85193 0.90299 0.90158 0.90166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.29 37.16 0.38 -0.59 16 2 C 0.06 0.57 6.19 37.16 0.23 0.80 16 3 O -0.37 -4.18 10.22 -39.27 -0.40 -4.58 16 4 C 0.46 5.95 7.84 36.00 0.28 6.23 16 5 O -0.49 -7.98 15.17 -24.05 -0.36 -8.34 16 6 C -0.15 -1.61 5.49 -27.89 -0.15 -1.76 16 7 C 0.13 1.82 2.75 -26.73 -0.07 1.75 16 8 H 0.11 1.84 7.96 -51.93 -0.41 1.43 16 9 O -0.54 -8.15 9.57 -49.68 -0.48 -8.63 16 10 C 0.03 0.44 4.70 -3.82 -0.02 0.42 16 11 N -0.50 -10.49 4.67 -228.07 -1.07 -11.55 16 12 C 0.19 4.65 4.27 -4.98 -0.02 4.63 16 13 C -0.49 -13.48 6.87 -34.44 -0.24 -13.71 16 14 H 0.07 1.84 7.80 -52.48 -0.41 1.43 16 15 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 16 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 17 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.05 1.05 4.26 -67.71 -0.29 0.76 16 22 C -0.18 -3.60 8.87 -26.69 -0.24 -3.83 16 23 C -0.24 -4.04 8.56 -26.69 -0.23 -4.27 16 24 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 28 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 29 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.36 4.43 8.28 45.56 0.38 4.81 16 32 H 0.08 1.25 7.85 -51.93 -0.41 0.85 16 33 H 0.03 0.46 6.83 -51.93 -0.35 0.11 16 34 H 0.00 -0.11 6.04 -51.93 -0.31 -0.42 16 35 H 0.03 0.79 7.79 -51.93 -0.40 0.38 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.12 2.30 7.06 -51.93 -0.37 1.93 16 38 H 0.13 3.09 4.92 -51.93 -0.26 2.83 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.08 1.41 7.14 -51.93 -0.37 1.04 16 LS Contribution 332.57 15.07 5.01 5.01 Total: -1.00 -31.83 332.57 -7.90 -39.73 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.86 Total: 5.48 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -0.46 Total: -8.21 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: -0.33 Total: -37.07 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -1.24 Total: -21.55 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.83 -7.90 -39.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166982708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.698 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds