Wall clock time and date at job start Mon Mar 30 2020 04:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45195 * 109.46999 * 2 1 4 4 C 1.34234 * 117.00008 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99624 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99987 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.46999 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.47111 * 305.00093 * 7 6 4 9 9 O 1.42902 * 109.47141 * 64.99966 * 7 6 4 10 10 C 1.53008 * 109.47151 * 184.99768 * 7 6 4 11 11 N 1.46901 * 109.47065 * 179.97438 * 10 7 6 12 12 C 1.46891 * 110.99845 * 190.00145 * 11 10 7 13 13 C 1.50706 * 109.47305 * 162.97955 * 12 11 10 14 14 H 1.08003 * 119.99605 * 4.65523 * 13 12 11 15 15 C 1.37865 * 120.00261 * 184.65682 * 13 12 11 16 16 N 1.31516 * 120.00402 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00248 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46774 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47376 * 119.99736 * 17 15 13 20 20 H 1.48497 * 109.47235 * 240.00012 * 17 15 13 21 21 C 1.46905 * 110.99688 * 66.04688 * 11 10 7 22 22 C 1.53003 * 117.49444 * 126.97732 * 21 11 10 23 23 C 1.53002 * 117.49633 * 58.31676 * 21 11 10 24 24 H 1.08999 * 109.47113 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46778 * 300.00248 * 1 2 3 26 26 H 1.08996 * 109.46936 * 60.00356 * 1 2 3 27 27 H 1.08997 * 109.46778 * 239.99752 * 2 1 3 28 28 H 1.09004 * 109.46752 * 119.99923 * 2 1 3 29 29 H 1.09001 * 109.47277 * 59.99734 * 6 4 3 30 30 H 1.09007 * 109.47311 * 299.99863 * 6 4 3 31 31 H 0.96701 * 113.99582 * 59.99659 * 9 7 6 32 32 H 1.09000 * 109.46783 * 60.00204 * 10 7 6 33 33 H 1.08999 * 109.47071 * 300.00548 * 10 7 6 34 34 H 1.09004 * 109.47576 * 282.97759 * 12 11 10 35 35 H 1.09003 * 109.47282 * 42.98102 * 12 11 10 36 36 H 0.96998 * 120.00509 * 179.97438 * 16 15 13 37 37 H 1.09001 * 115.55265 * 272.64423 * 21 11 10 38 38 H 1.08998 * 117.49638 * 359.97438 * 22 21 11 39 39 H 1.08995 * 117.49639 * 145.01981 * 22 21 11 40 40 H 1.08997 * 117.49810 * 214.96954 * 23 21 11 41 41 H 1.08995 * 117.49945 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 6 5.4486 2.8573 -0.0010 8 1 5.7806 2.2501 0.8410 9 8 5.8946 2.2632 -1.2218 10 6 6.0332 4.2658 0.1240 11 7 7.5002 4.1888 0.1247 12 6 8.0950 5.4843 0.4791 13 6 9.5347 5.2840 0.8770 14 1 9.9864 4.3063 0.7959 15 6 10.2753 6.3487 1.3446 16 7 9.7255 7.5394 1.4429 17 14 12.0600 6.1006 1.8371 18 1 12.4367 4.6787 1.6330 19 1 12.9292 6.9682 1.0022 20 1 12.2328 6.4575 3.2682 21 6 8.0031 3.7155 -1.1719 22 6 9.0647 4.5669 -1.8712 23 6 7.6335 4.5304 -2.4130 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.5851 3.4698 0.8888 30 1 3.5845 3.4693 -0.8912 31 1 5.6344 2.7515 -2.0149 32 1 5.6930 4.7189 1.0552 33 1 5.7011 4.8730 -0.7181 34 1 8.0452 6.1541 -0.3795 35 1 7.5450 5.9208 1.3128 36 1 10.2464 8.2885 1.7722 37 1 8.0727 2.6334 -1.2826 38 1 9.3896 5.4783 -1.3693 39 1 9.8325 4.0449 -2.4422 40 1 7.4604 3.9843 -3.3403 41 1 7.0169 5.4173 -2.2675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166982708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:31 Heat of formation + Delta-G solvation = -126.413694 kcal Electronic energy + Delta-G solvation = -21415.905456 eV Core-core repulsion = 18103.264015 eV Total energy + Delta-G solvation = -3312.641440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.55053 -40.21855 -38.15673 -37.19653 -34.99532 -34.06392 -32.94184 -31.97584 -29.62005 -27.01228 -24.58211 -24.33284 -23.36401 -22.55490 -21.67563 -20.54126 -18.67097 -18.35415 -17.98169 -17.70893 -17.39115 -16.70003 -16.59136 -16.15076 -15.82176 -15.05198 -15.01600 -14.50141 -14.25260 -14.11113 -13.56493 -13.54292 -13.31724 -12.98513 -12.84528 -12.70484 -12.65089 -12.61806 -12.49210 -12.03894 -11.91179 -11.80914 -11.49946 -11.48194 -11.42931 -11.21959 -11.09434 -10.57933 -10.32957 -8.85627 -8.15531 -6.21190 1.25141 1.40079 1.42026 1.54826 1.68253 2.42808 3.08571 3.17947 3.28580 3.53129 3.72071 3.88851 4.01389 4.10578 4.15291 4.23418 4.29458 4.32040 4.35743 4.42970 4.47957 4.65311 4.79886 4.86204 4.89205 4.93579 5.08174 5.15939 5.18814 5.20488 5.26528 5.43114 5.51145 5.67893 5.72992 6.13341 6.47370 6.69918 6.80403 6.92546 6.94448 7.45444 8.94486 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.034972 B = 0.003610 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.444873 B = 7755.226301 C = 8019.852086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 O -0.364 6.364 4 C 0.464 3.536 5 O -0.530 6.530 6 C -0.138 4.138 7 C 0.139 3.861 8 H 0.084 0.916 9 O -0.554 6.554 10 C 0.028 3.972 11 N -0.519 5.519 12 C 0.205 3.795 13 C -0.498 4.498 14 H 0.054 0.946 15 C 0.003 3.997 16 N -0.934 5.934 17 Si 0.958 3.042 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.281 1.281 21 C 0.050 3.950 22 C -0.202 4.202 23 C -0.199 4.199 24 H 0.098 0.902 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.376 0.624 32 H 0.077 0.923 33 H 0.046 0.954 34 H -0.023 1.023 35 H 0.003 0.997 36 H 0.262 0.738 37 H 0.121 0.879 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.811 -10.123 -6.023 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.282 6.282 4 C 0.308 3.692 5 O -0.418 6.418 6 C -0.175 4.175 7 C 0.079 3.921 8 H 0.102 0.898 9 O -0.360 6.360 10 C -0.100 4.100 11 N -0.241 5.241 12 C 0.079 3.921 13 C -0.536 4.536 14 H 0.072 0.928 15 C -0.194 4.194 16 N -0.575 5.575 17 Si 0.784 3.216 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.207 1.207 21 C -0.059 4.059 22 C -0.240 4.240 23 C -0.238 4.238 24 H 0.116 0.884 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.224 0.776 32 H 0.096 0.904 33 H 0.064 0.936 34 H -0.005 1.005 35 H 0.021 0.979 36 H 0.071 0.929 37 H 0.139 0.861 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.134 0.866 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.197 -11.054 -5.176 21.089 hybrid contribution 0.725 1.142 -0.407 1.412 sum -16.472 -9.912 -5.583 20.019 Atomic orbital electron populations 1.21815 0.90327 1.04297 1.03764 1.23241 0.97105 0.79504 1.02265 1.86506 1.24196 1.33442 1.84009 1.23964 0.80473 0.93145 0.71646 1.90713 1.61009 1.44251 1.45844 1.22183 0.95728 0.90702 1.08934 1.21486 0.89570 0.92715 0.88337 0.89841 1.86707 1.79689 1.54097 1.15489 1.22792 0.88702 0.96732 1.01759 1.61951 1.05112 1.29535 1.27538 1.19479 0.94214 0.85080 0.93294 1.21349 0.96462 0.94808 1.41019 0.92815 1.25737 1.02614 0.94929 0.96153 1.70060 1.38194 1.00831 1.48462 0.85494 0.80073 0.78260 0.77785 1.19276 1.20536 1.20655 1.22602 1.01477 0.96704 0.85084 1.23412 0.92806 1.03839 1.03916 1.23337 0.98054 1.02881 0.99531 0.88374 0.91239 0.91129 0.91642 0.91778 0.84580 0.84619 0.77571 0.90434 0.93607 1.00492 0.97903 0.92899 0.86140 0.89291 0.88833 0.86572 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.29 71.98 0.74 -0.79 16 2 C 0.05 0.91 6.19 71.98 0.45 1.35 16 3 O -0.36 -7.65 10.22 -51.45 -0.53 -8.18 16 4 C 0.46 11.28 7.84 71.23 0.56 11.83 16 5 O -0.53 -17.06 15.17 27.05 0.41 -16.65 16 6 C -0.14 -2.65 5.49 29.85 0.16 -2.48 16 7 C 0.14 3.81 2.75 30.60 0.08 3.90 16 8 H 0.08 2.78 7.96 -2.39 -0.02 2.76 16 9 O -0.55 -15.79 9.57 -135.16 -1.29 -17.08 16 10 C 0.03 0.90 4.70 86.31 0.41 1.30 16 11 N -0.52 -21.81 4.67 -875.48 -4.09 -25.90 16 12 C 0.21 10.55 4.27 85.56 0.37 10.91 16 13 C -0.50 -27.93 6.87 25.60 0.18 -27.76 16 14 H 0.05 3.08 7.80 -2.91 -0.02 3.06 16 15 C 0.00 0.18 5.46 84.65 0.46 0.64 16 16 N -0.93 -55.46 13.29 21.44 0.28 -55.18 16 17 Si 0.96 44.93 29.54 68.60 2.03 46.95 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 C 0.05 1.90 4.26 44.92 0.19 2.09 16 22 C -0.20 -8.06 8.87 30.62 0.27 -7.78 16 23 C -0.20 -6.33 8.56 30.62 0.26 -6.07 16 24 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 28 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 29 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.14 1.84 8.14 -2.38 -0.02 1.83 16 31 H 0.38 8.08 8.28 -74.06 -0.61 7.47 16 32 H 0.08 2.45 7.85 -2.39 -0.02 2.44 16 33 H 0.05 1.32 6.83 -2.39 -0.02 1.30 16 34 H -0.02 -1.22 6.04 -2.38 -0.01 -1.23 16 35 H 0.00 0.16 7.79 -2.39 -0.02 0.14 16 36 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 37 H 0.12 4.55 7.06 -2.39 -0.02 4.54 16 38 H 0.09 4.35 4.92 -2.39 -0.01 4.34 16 39 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 40 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.08 2.52 7.14 -2.39 -0.02 2.50 16 Total: -1.00 -70.44 332.57 1.34 -69.10 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.41 Total: 19.79 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 4.13 Total: -12.85 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -3.81 Total: -81.08 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -1.41 Total: -41.91 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -70.44 1.34 -69.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166982708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.315 kcal (2) G-P(sol) polarization free energy of solvation -70.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds