Wall clock time and date at job start Mon Mar 30 2020 05:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00166 * 2 1 4 4 H 1.08997 * 109.57089 * 330.16293 * 3 2 1 5 5 C 1.53117 * 109.52252 * 90.31317 * 3 2 1 6 6 C 1.53038 * 109.28110 * 177.55983 * 5 3 2 7 7 N 1.46848 * 109.52222 * 300.82742 * 6 5 3 8 8 C 1.46901 * 110.99700 * 185.83438 * 7 6 5 9 9 C 1.50705 * 109.47263 * 54.00106 * 8 7 6 10 10 O 1.21292 * 119.99637 * 7.91601 * 9 8 7 11 11 N 1.34771 * 119.99923 * 187.91186 * 9 8 7 12 12 C 1.37102 * 119.99886 * 179.97438 * 11 9 8 13 13 H 1.07997 * 119.99899 * 0.02562 * 12 11 9 14 14 C 1.38955 * 119.99894 * 180.27452 * 12 11 9 15 15 N 1.31401 * 119.99999 * 359.73176 * 14 12 11 16 16 Si 1.86798 * 119.99637 * 179.72541 * 14 12 11 17 17 H 1.48498 * 109.47168 * 90.00640 * 16 14 12 18 18 H 1.48499 * 109.46964 * 210.00076 * 16 14 12 19 19 H 1.48493 * 109.47553 * 330.00364 * 16 14 12 20 20 C 1.46850 * 111.20034 * 61.73894 * 7 6 5 21 21 H 1.09002 * 109.46018 * 58.26075 * 20 7 6 22 22 C 1.52997 * 109.46090 * 178.23966 * 20 7 6 23 23 N 1.46901 * 109.47486 * 292.74769 * 22 20 7 24 24 C 1.53035 * 109.52122 * 298.25620 * 20 7 6 25 25 H 1.08997 * 109.46911 * 60.00033 * 1 2 3 26 26 H 1.08998 * 109.46704 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47019 * 299.99612 * 1 2 3 28 28 H 1.08999 * 109.50938 * 297.50748 * 5 3 2 29 29 H 1.09000 * 109.50309 * 57.62665 * 5 3 2 30 30 H 1.08998 * 109.46646 * 180.80785 * 6 5 3 31 31 H 1.09004 * 109.46046 * 60.84181 * 6 5 3 32 32 H 1.08996 * 109.47400 * 293.99442 * 8 7 6 33 33 H 1.09011 * 109.47139 * 173.99764 * 8 7 6 34 34 H 0.97001 * 120.00225 * 0.02562 * 11 9 8 35 35 H 0.97001 * 120.00121 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.47157 * 52.75149 * 22 20 7 37 37 H 1.09004 * 109.47091 * 172.74472 * 22 20 7 38 38 H 1.00901 * 110.99723 * 180.02562 * 23 22 20 39 39 H 1.00895 * 110.99671 * 303.95663 * 23 22 20 40 40 H 1.08999 * 109.50080 * 179.11699 * 24 20 7 41 41 H 1.08996 * 109.50499 * 299.23907 * 24 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0013 -0.5110 5 6 2.2256 1.7697 1.4431 6 6 2.9038 3.1416 1.4368 7 7 4.1909 3.0495 0.7359 8 6 4.9331 4.3137 0.8299 9 6 5.0655 4.7121 2.2773 10 8 4.7179 3.9463 3.1513 11 7 5.5704 5.9192 2.6005 12 6 5.6904 6.2818 3.9172 13 1 5.3808 5.6000 4.6954 14 6 6.2055 7.5286 4.2503 15 7 6.5826 8.3580 3.3034 16 14 6.3619 8.0256 6.0441 17 1 7.6932 7.6144 6.5575 18 1 6.2188 9.4989 6.1638 19 1 5.2980 7.3590 6.8371 20 6 4.0054 2.6511 -0.6653 21 1 3.3594 3.3727 -1.1654 22 6 5.3639 2.6102 -1.3678 23 7 5.9044 3.9724 -1.4685 24 6 3.3602 1.2646 -0.7216 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.2632 1.8418 1.9498 29 1 2.8596 1.0529 1.9652 30 1 3.0716 3.4686 2.4629 31 1 2.2631 3.8610 0.9267 32 1 4.3964 5.0914 0.2866 33 1 5.9249 4.1860 0.3960 34 1 5.8481 6.5317 1.9015 35 1 6.9419 9.2285 3.5359 36 1 6.0510 1.9882 -0.7942 37 1 5.2436 2.1922 -2.3673 38 1 6.8019 3.9721 -1.9296 39 1 5.2560 4.5847 -1.9403 40 1 3.2082 0.9759 -1.7616 41 1 4.0118 0.5399 -0.2336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226418120.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:22 Heat of formation + Delta-G solvation = -63.206731 kcal Electronic energy + Delta-G solvation = -21923.454748 eV Core-core repulsion = 18645.846918 eV Total energy + Delta-G solvation = -3277.607830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.74536 -38.08484 -37.02076 -34.38554 -33.76193 -32.07809 -31.09123 -30.36576 -27.61123 -26.22867 -24.88214 -24.01416 -22.70862 -21.08413 -19.78475 -19.00816 -17.72192 -16.63430 -16.17857 -15.63203 -15.60580 -15.20839 -14.92926 -14.72603 -14.28989 -14.13788 -13.77159 -13.61054 -13.54378 -12.81618 -12.47321 -12.35779 -11.97647 -11.83987 -11.56526 -11.35547 -11.31883 -11.05348 -10.91298 -10.62530 -10.60614 -10.37089 -10.33136 -10.12590 -9.52699 -9.25165 -8.66265 -7.89837 -7.86008 -7.62794 -6.32360 -3.72218 3.23554 3.31263 3.37272 3.66058 4.05684 4.14255 4.32659 4.54640 4.75877 4.92886 5.11678 5.21640 5.24061 5.26905 5.34624 5.37030 5.38518 5.43311 5.51394 5.55290 5.69320 5.80339 5.93252 5.97751 6.08922 6.21381 6.31088 6.45353 6.56563 6.74678 6.84076 7.06131 7.19567 7.35311 7.57798 7.63603 7.69449 8.18894 8.74739 9.28955 9.68465 10.21485 10.85583 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.025496 B = 0.004468 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.963699 B = 6265.878499 C = 7151.233344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.089 3.911 4 H 0.052 0.948 5 C -0.131 4.131 6 C 0.037 3.963 7 N -0.504 5.504 8 C 0.041 3.959 9 C 0.439 3.561 10 O -0.585 6.585 11 N -0.565 5.565 12 C -0.297 4.297 13 H 0.101 0.899 14 C 0.021 3.979 15 N -0.903 5.903 16 Si 0.928 3.072 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.089 3.911 21 H 0.033 0.967 22 C 0.066 3.934 23 N -0.840 5.840 24 C -0.104 4.104 25 H 0.037 0.963 26 H 0.082 0.918 27 H 0.041 0.959 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.014 0.986 32 H 0.034 0.966 33 H 0.142 0.858 34 H 0.392 0.608 35 H 0.270 0.730 36 H 0.086 0.914 37 H 0.031 0.969 38 H 0.341 0.659 39 H 0.338 0.662 40 H 0.066 0.934 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.113 -10.037 -12.690 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.031 3.969 4 H 0.071 0.929 5 C -0.169 4.169 6 C -0.090 4.090 7 N -0.230 5.230 8 C -0.089 4.089 9 C 0.226 3.774 10 O -0.470 6.470 11 N -0.201 5.201 12 C -0.427 4.427 13 H 0.119 0.881 14 C -0.180 4.180 15 N -0.545 5.545 16 Si 0.755 3.245 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.195 1.195 20 C -0.020 4.020 21 H 0.051 0.949 22 C -0.065 4.065 23 N -0.370 5.370 24 C -0.143 4.143 25 H 0.056 0.944 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.143 0.857 31 H 0.032 0.968 32 H 0.052 0.948 33 H 0.159 0.841 34 H 0.226 0.774 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.049 0.951 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.085 0.915 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.879 -10.886 -11.068 16.980 hybrid contribution -0.590 1.497 -1.012 1.901 sum -7.469 -9.388 -12.080 17.025 Atomic orbital electron populations 1.22739 0.81588 1.02339 0.99805 1.87896 1.19212 1.28286 1.95137 1.22249 0.94279 0.83799 0.96543 0.92946 1.22034 1.00472 0.98483 0.95921 1.22567 0.88285 0.94552 1.03585 1.61646 1.19037 1.31905 1.10366 1.22468 1.02783 0.89013 0.94678 1.20224 0.83687 0.83021 0.90488 1.90389 1.53943 1.52120 1.50563 1.41877 1.55634 1.14191 1.08444 1.19701 1.38977 1.00084 0.83896 0.88071 1.25225 0.97274 0.95886 0.99629 1.69617 1.43346 1.08989 1.32553 0.85896 0.78773 0.77413 0.82416 1.20482 1.21061 1.19527 1.21577 0.94977 0.95330 0.90150 0.94918 1.21859 0.96242 0.90538 0.97865 1.59164 1.08102 1.09829 1.59927 1.21591 0.95386 0.97334 0.99969 0.94430 0.89924 0.94064 0.92149 0.90135 0.85705 0.96825 0.94786 0.84101 0.77442 0.92051 0.89590 0.95112 0.84603 0.84887 0.91522 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 101.05 1.09 1.41 16 2 O -0.39 -5.08 10.35 -35.23 -0.36 -5.45 16 3 C 0.09 1.17 2.68 -26.61 -0.07 1.10 16 4 H 0.05 0.65 7.79 -51.93 -0.40 0.24 16 5 C -0.13 -2.00 5.72 -26.65 -0.15 -2.16 16 6 C 0.04 0.67 5.01 -3.83 -0.02 0.65 16 7 N -0.50 -8.74 4.39 -228.11 -1.00 -9.74 16 8 C 0.04 0.78 4.27 -4.97 -0.02 0.76 16 9 C 0.44 10.69 7.29 -10.99 -0.08 10.61 16 10 O -0.58 -15.99 13.35 5.55 0.07 -15.91 16 11 N -0.57 -14.71 5.29 -10.96 -0.06 -14.76 16 12 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 13 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 14 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 15 N -0.90 -25.02 13.05 55.50 0.72 -24.30 16 16 Si 0.93 21.45 29.55 -169.99 -5.02 16.42 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 C 0.09 1.19 2.19 -67.72 -0.15 1.04 16 21 H 0.03 0.43 8.13 -51.93 -0.42 0.01 16 22 C 0.07 0.74 6.03 -3.83 -0.02 0.72 16 23 N -0.84 -9.09 5.93 -10.37 -0.06 -9.15 16 24 C -0.10 -1.30 5.02 -26.65 -0.13 -1.44 16 25 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.39 7.96 -51.93 -0.41 -0.02 16 28 H 0.06 0.85 7.96 -51.93 -0.41 0.44 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.13 2.74 5.00 -51.93 -0.26 2.48 16 31 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.03 0.61 8.12 -51.93 -0.42 0.19 16 33 H 0.14 2.54 5.31 -51.92 -0.28 2.27 16 34 H 0.39 9.86 7.90 -40.82 -0.32 9.54 16 35 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.34 3.03 9.08 -39.29 -0.36 2.67 16 39 H 0.34 3.30 8.99 -39.29 -0.35 2.95 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 324.24 15.07 4.89 4.89 Total: -1.00 -31.59 324.24 -7.15 -38.74 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -6.53 Total: 14.67 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 0.20 Total: 4.58 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.40 Total: -57.95 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.29 Total: -21.36 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.59 -7.15 -38.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226418120.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.463 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds