Wall clock time and date at job start Mon Mar 30 2020 05:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00166 * 2 1 4 4 H 1.08997 * 109.57089 * 330.16293 * 3 2 1 5 5 C 1.53117 * 109.52252 * 90.31317 * 3 2 1 6 6 C 1.53038 * 109.28110 * 177.55983 * 5 3 2 7 7 N 1.46848 * 109.52222 * 300.82742 * 6 5 3 8 8 C 1.46901 * 110.99700 * 185.83438 * 7 6 5 9 9 C 1.50705 * 109.47263 * 54.00106 * 8 7 6 10 10 O 1.21292 * 119.99637 * 7.91601 * 9 8 7 11 11 N 1.34771 * 119.99923 * 187.91186 * 9 8 7 12 12 C 1.37102 * 119.99886 * 179.97438 * 11 9 8 13 13 H 1.07997 * 119.99899 * 0.02562 * 12 11 9 14 14 C 1.38955 * 119.99894 * 180.27452 * 12 11 9 15 15 N 1.31401 * 119.99999 * 359.73176 * 14 12 11 16 16 Si 1.86798 * 119.99637 * 179.72541 * 14 12 11 17 17 H 1.48498 * 109.47168 * 90.00640 * 16 14 12 18 18 H 1.48499 * 109.46964 * 210.00076 * 16 14 12 19 19 H 1.48493 * 109.47553 * 330.00364 * 16 14 12 20 20 C 1.46850 * 111.20034 * 61.73894 * 7 6 5 21 21 H 1.09002 * 109.46018 * 58.26075 * 20 7 6 22 22 C 1.52997 * 109.46090 * 178.23966 * 20 7 6 23 23 N 1.46901 * 109.47486 * 292.74769 * 22 20 7 24 24 C 1.53035 * 109.52122 * 298.25620 * 20 7 6 25 25 H 1.08997 * 109.46911 * 60.00033 * 1 2 3 26 26 H 1.08998 * 109.46704 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47019 * 299.99612 * 1 2 3 28 28 H 1.08999 * 109.50938 * 297.50748 * 5 3 2 29 29 H 1.09000 * 109.50309 * 57.62665 * 5 3 2 30 30 H 1.08998 * 109.46646 * 180.80785 * 6 5 3 31 31 H 1.09004 * 109.46046 * 60.84181 * 6 5 3 32 32 H 1.08996 * 109.47400 * 293.99442 * 8 7 6 33 33 H 1.09011 * 109.47139 * 173.99764 * 8 7 6 34 34 H 0.97001 * 120.00225 * 0.02562 * 11 9 8 35 35 H 0.97001 * 120.00121 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.47157 * 52.75149 * 22 20 7 37 37 H 1.09004 * 109.47091 * 172.74472 * 22 20 7 38 38 H 1.00901 * 110.99723 * 180.02562 * 23 22 20 39 39 H 1.00895 * 110.99671 * 303.95663 * 23 22 20 40 40 H 1.08999 * 109.50080 * 179.11699 * 24 20 7 41 41 H 1.08996 * 109.50499 * 299.23907 * 24 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0013 -0.5110 5 6 2.2256 1.7697 1.4431 6 6 2.9038 3.1416 1.4368 7 7 4.1909 3.0495 0.7359 8 6 4.9331 4.3137 0.8299 9 6 5.0655 4.7121 2.2773 10 8 4.7179 3.9463 3.1513 11 7 5.5704 5.9192 2.6005 12 6 5.6904 6.2818 3.9172 13 1 5.3808 5.6000 4.6954 14 6 6.2055 7.5286 4.2503 15 7 6.5826 8.3580 3.3034 16 14 6.3619 8.0256 6.0441 17 1 7.6932 7.6144 6.5575 18 1 6.2188 9.4989 6.1638 19 1 5.2980 7.3590 6.8371 20 6 4.0054 2.6511 -0.6653 21 1 3.3594 3.3727 -1.1654 22 6 5.3639 2.6102 -1.3678 23 7 5.9044 3.9724 -1.4685 24 6 3.3602 1.2646 -0.7216 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.2632 1.8418 1.9498 29 1 2.8596 1.0529 1.9652 30 1 3.0716 3.4686 2.4629 31 1 2.2631 3.8610 0.9267 32 1 4.3964 5.0914 0.2866 33 1 5.9249 4.1860 0.3960 34 1 5.8481 6.5317 1.9015 35 1 6.9419 9.2285 3.5359 36 1 6.0510 1.9882 -0.7942 37 1 5.2436 2.1922 -2.3673 38 1 6.8019 3.9721 -1.9296 39 1 5.2560 4.5847 -1.9403 40 1 3.2082 0.9759 -1.7616 41 1 4.0118 0.5399 -0.2336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226418120.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:22 Heat of formation + Delta-G solvation = -89.190689 kcal Electronic energy + Delta-G solvation = -21924.581497 eV Core-core repulsion = 18645.846918 eV Total energy + Delta-G solvation = -3278.734579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.05948 -39.66394 -38.26456 -35.98472 -35.22352 -33.44374 -33.09670 -31.47723 -28.93250 -27.45074 -26.26448 -25.42864 -24.05047 -22.15377 -21.04482 -20.79982 -19.78604 -17.76054 -17.61224 -16.82504 -16.72217 -16.56871 -16.28604 -15.92321 -15.88880 -15.46977 -15.35264 -15.06849 -14.94235 -13.96913 -13.93354 -13.49915 -13.44668 -13.24942 -12.93665 -12.80799 -12.65089 -12.50257 -12.37597 -12.11634 -12.05121 -11.91627 -11.74793 -11.46936 -11.34971 -10.51916 -10.14970 -9.89328 -9.19597 -9.03934 -8.41851 -5.89762 1.39460 1.42083 1.54963 2.14346 2.31911 2.73464 2.88782 3.26187 3.48097 3.67164 3.80654 3.90564 4.08831 4.19646 4.31352 4.37337 4.40742 4.46981 4.53181 4.54607 4.59981 4.68656 4.73224 4.86418 4.87881 4.98390 5.04067 5.20310 5.23080 5.28531 5.40237 5.46194 5.98584 6.20387 6.26361 6.28049 6.43217 6.64736 6.68295 7.19077 7.64938 8.21946 8.75638 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.025496 B = 0.004468 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.963699 B = 6265.878499 C = 7151.233344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.095 3.905 4 H 0.068 0.932 5 C -0.124 4.124 6 C 0.042 3.958 7 N -0.520 5.520 8 C 0.061 3.939 9 C 0.433 3.567 10 O -0.619 6.619 11 N -0.574 5.574 12 C -0.332 4.332 13 H 0.076 0.924 14 C -0.013 4.013 15 N -0.921 5.921 16 Si 0.991 3.009 17 H -0.271 1.271 18 H -0.270 1.270 19 H -0.274 1.274 20 C 0.089 3.911 21 H 0.044 0.956 22 C 0.071 3.929 23 N -0.854 5.854 24 C -0.100 4.100 25 H 0.053 0.947 26 H 0.099 0.901 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.020 0.980 32 H 0.047 0.953 33 H 0.155 0.845 34 H 0.395 0.605 35 H 0.276 0.724 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.353 0.647 39 H 0.347 0.653 40 H 0.095 0.905 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.508 -10.157 -14.481 19.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C 0.037 3.963 4 H 0.086 0.914 5 C -0.163 4.163 6 C -0.086 4.086 7 N -0.246 5.246 8 C -0.070 4.070 9 C 0.221 3.779 10 O -0.507 6.507 11 N -0.211 5.211 12 C -0.462 4.462 13 H 0.094 0.906 14 C -0.213 4.213 15 N -0.562 5.562 16 Si 0.815 3.185 17 H -0.197 1.197 18 H -0.195 1.195 19 H -0.199 1.199 20 C -0.019 4.019 21 H 0.062 0.938 22 C -0.060 4.060 23 N -0.386 5.386 24 C -0.138 4.138 25 H 0.072 0.928 26 H 0.118 0.882 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.039 0.961 32 H 0.065 0.935 33 H 0.172 0.828 34 H 0.229 0.771 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.168 0.832 39 H 0.160 0.840 40 H 0.113 0.887 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.273 -11.008 -12.897 18.450 hybrid contribution -0.517 1.480 -0.476 1.639 sum -7.790 -9.528 -13.373 18.174 Atomic orbital electron populations 1.22968 0.79878 1.03802 1.00557 1.87879 1.21156 1.28009 1.95118 1.22150 0.95168 0.84333 0.94661 0.91433 1.21943 0.99928 0.96403 0.97994 1.22325 0.89060 0.96106 1.01110 1.61630 1.18710 1.30904 1.13360 1.22389 1.04117 0.90152 0.90335 1.21314 0.81854 0.81975 0.92745 1.90384 1.54850 1.52961 1.52472 1.41935 1.56419 1.14991 1.07773 1.19658 1.41097 1.00754 0.84660 0.90572 1.25998 0.96216 0.95237 1.03830 1.69678 1.43051 1.09290 1.34218 0.84958 0.78689 0.77564 0.77285 1.19692 1.19496 1.19929 1.21722 0.96692 0.95897 0.87615 0.93805 1.21782 0.94556 0.90746 0.98902 1.58979 1.09102 1.09848 1.60714 1.21579 0.94541 0.96314 1.01383 0.92815 0.88237 0.94132 0.91467 0.92475 0.90362 0.96143 0.93526 0.82801 0.77117 0.91421 0.91067 0.92000 0.83200 0.83962 0.88651 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.82 113.37 1.23 1.64 16 2 O -0.40 -9.80 10.35 -148.98 -1.54 -11.34 16 3 C 0.09 2.32 2.68 30.67 0.08 2.40 16 4 H 0.07 1.47 7.79 -2.39 -0.02 1.45 16 5 C -0.12 -3.82 5.72 30.65 0.18 -3.65 16 6 C 0.04 1.52 5.01 86.33 0.43 1.95 16 7 N -0.52 -17.86 4.39 -875.62 -3.85 -21.71 16 8 C 0.06 2.27 4.27 85.56 0.37 2.64 16 9 C 0.43 21.73 7.29 87.66 0.64 22.37 16 10 O -0.62 -35.54 13.35 -3.07 -0.04 -35.58 16 11 N -0.57 -30.75 5.29 -306.98 -1.62 -32.37 16 12 C -0.33 -19.47 9.68 84.04 0.81 -18.66 16 13 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 14 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 15 N -0.92 -50.86 13.05 21.66 0.28 -50.58 16 16 Si 0.99 44.06 29.55 68.60 2.03 46.09 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 20 C 0.09 2.18 2.19 44.94 0.10 2.28 16 21 H 0.04 1.01 8.13 -2.39 -0.02 0.99 16 22 C 0.07 1.41 6.03 86.30 0.52 1.93 16 23 N -0.85 -16.44 5.93 -186.72 -1.11 -17.54 16 24 C -0.10 -2.26 5.02 30.65 0.15 -2.11 16 25 H 0.05 0.76 8.09 -2.39 -0.02 0.74 16 26 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.04 0.70 7.96 -2.39 -0.02 0.68 16 28 H 0.07 1.91 7.96 -2.39 -0.02 1.89 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.08 3.62 5.00 -2.39 -0.01 3.61 16 31 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.05 1.63 8.12 -2.39 -0.02 1.61 16 33 H 0.16 5.43 5.31 -2.38 -0.01 5.42 16 34 H 0.40 20.25 7.90 -92.71 -0.73 19.52 16 35 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.35 5.42 9.08 -89.69 -0.81 4.61 16 39 H 0.35 5.79 8.99 -89.70 -0.81 4.98 16 40 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -69.88 324.24 -2.17 -72.05 By element: Atomic # 1 Polarization: 41.74 SS G_CDS: -1.30 Total: 40.44 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 4.97 Total: 10.54 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -6.29 Total: -122.20 kcal Atomic # 8 Polarization: -45.34 SS G_CDS: -1.58 Total: -46.92 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -69.88 -2.17 -72.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226418120.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.139 kcal (2) G-P(sol) polarization free energy of solvation -69.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds