Wall clock time and date at job start Mon Mar 30 2020 05:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47024 * 2 1 4 4 C 1.53007 * 109.46890 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.46812 * 179.97438 * 4 3 2 6 6 C 1.42904 * 113.99793 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47098 * 180.02562 * 6 5 4 8 8 H 1.09009 * 109.46821 * 55.00186 * 7 6 5 9 9 O 1.42895 * 109.47263 * 295.00469 * 7 6 5 10 10 C 1.52994 * 109.47075 * 175.00030 * 7 6 5 11 11 N 1.46899 * 109.47367 * 190.56625 * 10 7 6 12 12 C 1.46893 * 111.00589 * 172.09287 * 11 10 7 13 13 C 1.50697 * 109.47656 * 196.04196 * 12 11 10 14 14 H 1.08004 * 119.99494 * 3.71532 * 13 12 11 15 15 C 1.37875 * 120.00180 * 183.72072 * 13 12 11 16 16 N 1.31510 * 120.00504 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99668 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47447 * 60.00132 * 17 15 13 19 19 H 1.48508 * 109.46851 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47194 * 299.99525 * 17 15 13 21 21 C 1.46905 * 110.99768 * 296.04687 * 11 10 7 22 22 C 1.52995 * 117.49996 * 154.73431 * 21 11 10 23 23 C 1.53000 * 117.50053 * 86.10895 * 21 11 10 24 24 H 1.09002 * 109.47073 * 60.00024 * 1 2 3 25 25 H 1.08994 * 109.46970 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47078 * 300.00559 * 1 2 3 27 27 H 1.08998 * 109.47755 * 239.99767 * 2 1 3 28 28 H 1.09008 * 109.47099 * 119.99260 * 2 1 3 29 29 H 1.08998 * 109.47649 * 59.99790 * 3 2 1 30 30 H 1.08998 * 109.47307 * 299.99424 * 3 2 1 31 31 H 1.09001 * 109.46914 * 60.00441 * 4 3 2 32 32 H 1.08995 * 109.47173 * 299.99504 * 4 3 2 33 33 H 1.09002 * 109.46981 * 60.00336 * 6 5 4 34 34 H 1.08995 * 109.47214 * 300.00505 * 6 5 4 35 35 H 0.96706 * 114.00084 * 300.00070 * 9 7 6 36 36 H 1.09000 * 109.47326 * 310.56443 * 10 7 6 37 37 H 1.09000 * 109.47242 * 70.56727 * 10 7 6 38 38 H 1.09004 * 109.47189 * 316.04045 * 12 11 10 39 39 H 1.09000 * 109.47296 * 76.03413 * 12 11 10 40 40 H 0.96995 * 120.00598 * 179.97438 * 16 15 13 41 41 H 1.09007 * 115.54513 * 300.43975 * 21 11 10 42 42 H 1.08998 * 117.50472 * 359.97438 * 22 21 11 43 43 H 1.08999 * 117.50324 * 145.02261 * 22 21 11 44 44 H 1.09004 * 117.49542 * 214.97844 * 23 21 11 45 45 H 1.08991 * 117.49794 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.4709 2.9026 0.0000 7 6 5.8654 4.3809 0.0000 8 1 5.3896 4.8839 0.8419 9 8 5.4380 4.9880 -1.2210 10 6 7.3853 4.5031 0.1256 11 7 7.7446 5.9047 0.3793 12 6 9.1742 6.0336 0.6914 13 6 9.4318 7.3784 1.3208 14 1 8.6071 8.0441 1.5287 15 6 10.7202 7.7589 1.6311 16 7 11.7243 6.9482 1.3783 17 14 11.0394 9.4262 2.4106 18 1 10.3178 9.5136 3.7056 19 1 12.4965 9.5925 2.6443 20 1 10.5578 10.4977 1.5023 21 6 7.3752 6.7571 -0.7588 22 6 7.1168 8.2385 -0.4772 23 6 5.9473 7.3052 -0.7968 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9286 -0.8892 32 1 3.9330 0.9289 0.8909 33 1 5.8736 2.4187 -0.8898 34 1 5.8737 2.4194 0.8901 35 1 5.8227 4.5900 -2.0139 36 1 7.7325 3.8837 0.9526 37 1 7.8544 4.1696 -0.8000 38 1 9.4671 5.2457 1.3852 39 1 9.7559 5.9444 -0.2261 40 1 12.6307 7.2160 1.5962 41 1 7.8408 6.4989 -1.7100 42 1 7.2204 8.5808 0.5524 43 1 7.4123 8.9555 -1.2432 44 1 5.4736 7.4081 -1.7731 45 1 5.2818 7.0331 0.0224 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227898012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:38 Heat of formation + Delta-G solvation = -78.603962 kcal Electronic energy + Delta-G solvation = -21294.672778 eV Core-core repulsion = 18119.937617 eV Total energy + Delta-G solvation = -3174.735160 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.87680 -37.75096 -35.97884 -34.94822 -33.58723 -32.33333 -30.35846 -28.99255 -26.87075 -24.36998 -23.34920 -22.16086 -21.62337 -21.39210 -21.05081 -19.50649 -16.86120 -16.64421 -16.23097 -16.00972 -15.56027 -14.89814 -14.65554 -14.48556 -14.42189 -14.00543 -13.79684 -13.29829 -12.90588 -12.82359 -12.34590 -12.14770 -11.88096 -11.65751 -11.40676 -11.34618 -11.25759 -11.10548 -10.90948 -10.81916 -10.68595 -10.66153 -10.33104 -10.02231 -9.84952 -9.66653 -9.31110 -9.08459 -8.71706 -8.35777 -7.27918 -5.97603 -3.97139 3.36935 3.40291 3.43137 3.48089 4.44949 4.60287 4.63440 4.67829 4.78734 4.88218 4.94159 5.02201 5.13721 5.19254 5.28013 5.35055 5.38281 5.43887 5.50033 5.53840 5.56829 5.64345 5.70663 5.81865 5.86761 5.96618 5.96887 6.03524 6.09546 6.27064 6.42388 6.55622 6.56392 6.88829 7.11896 7.15545 7.23600 7.40400 7.89175 7.96319 8.13645 8.25926 8.58620 9.10446 9.66094 11.13485 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.034930 B = 0.003115 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.401165 B = 8986.000786 C = 9336.868173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.119 4.119 4 C 0.060 3.940 5 O -0.377 6.377 6 C 0.033 3.967 7 C 0.117 3.883 8 H 0.110 0.890 9 O -0.537 6.537 10 C 0.033 3.967 11 N -0.507 5.507 12 C 0.196 3.804 13 C -0.497 4.497 14 H 0.068 0.932 15 C 0.052 3.948 16 N -0.904 5.904 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.277 1.277 21 C 0.034 3.966 22 C -0.169 4.169 23 C -0.134 4.134 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.359 0.641 36 H 0.075 0.925 37 H 0.025 0.975 38 H 0.024 0.976 39 H -0.006 1.006 40 H 0.260 0.740 41 H 0.062 0.938 42 H 0.101 0.899 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.732 -12.123 -4.918 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.017 4.017 5 O -0.296 6.296 6 C -0.045 4.045 7 C 0.057 3.943 8 H 0.128 0.872 9 O -0.341 6.341 10 C -0.097 4.097 11 N -0.232 5.232 12 C 0.071 3.929 13 C -0.535 4.535 14 H 0.086 0.914 15 C -0.148 4.148 16 N -0.544 5.544 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.202 1.202 21 C -0.075 4.075 22 C -0.206 4.206 23 C -0.172 4.172 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.205 0.795 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.042 0.958 39 H 0.011 0.989 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.119 0.881 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.244 -11.441 -4.065 21.090 hybrid contribution 1.557 -0.198 -0.610 1.684 sum -15.687 -11.639 -4.676 20.085 Atomic orbital electron populations 1.21753 0.95450 1.01620 1.02093 1.21449 0.96227 0.96209 1.02111 1.21540 0.93618 0.97001 1.03477 1.22504 0.95067 0.84345 0.99776 1.87954 1.20822 1.25523 1.95330 1.23310 0.81575 0.99145 1.00443 1.21923 0.93926 0.89469 0.88962 0.87180 1.86803 1.72277 1.60245 1.14741 1.22576 0.94150 0.92965 0.99960 1.61910 1.22736 1.03293 1.35268 1.19709 0.80148 0.97854 0.95168 1.21212 0.92358 1.01220 1.38735 0.91390 1.24988 0.96191 0.97369 0.96294 1.69945 0.99210 1.36376 1.48854 0.86590 0.76821 0.84317 0.79863 1.20244 1.21515 1.20241 1.21911 0.98538 0.94770 0.92323 1.23081 1.02448 0.92462 1.02636 1.22672 0.90749 1.02474 1.01325 0.92591 0.92699 0.92568 0.91943 0.91895 0.91095 0.91103 0.93763 0.93648 0.93483 0.92617 0.79488 0.90621 0.95648 0.95774 0.98853 0.93037 0.92072 0.88071 0.90486 0.90397 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.60 16 2 C -0.12 -0.86 5.93 -26.73 -0.16 -1.02 16 3 C -0.12 -1.06 5.58 -26.73 -0.15 -1.21 16 4 C 0.06 0.61 5.94 37.16 0.22 0.83 16 5 O -0.38 -5.03 10.31 -40.08 -0.41 -5.45 16 6 C 0.03 0.41 5.56 37.16 0.21 0.61 16 7 C 0.12 1.73 2.77 -26.73 -0.07 1.65 16 8 H 0.11 1.85 7.90 -51.92 -0.41 1.44 16 9 O -0.54 -7.84 8.91 -40.08 -0.36 -8.19 16 10 C 0.03 0.56 4.76 -3.83 -0.02 0.54 16 11 N -0.51 -10.88 4.59 -228.09 -1.05 -11.93 16 12 C 0.20 5.09 4.74 -4.98 -0.02 5.07 16 13 C -0.50 -13.91 8.35 -34.44 -0.29 -14.20 16 14 H 0.07 1.88 5.52 -52.48 -0.29 1.59 16 15 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 16 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 17 Si 0.90 21.91 29.54 -169.99 -5.02 16.88 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.03 0.67 3.90 -67.71 -0.26 0.41 16 22 C -0.17 -3.34 9.39 -26.73 -0.25 -3.59 16 23 C -0.13 -2.36 7.20 -26.73 -0.19 -2.55 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 35 H 0.36 4.23 9.05 45.56 0.41 4.64 16 36 H 0.08 1.28 7.85 -51.93 -0.41 0.87 16 37 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.66 7.84 -51.93 -0.41 0.26 16 39 H -0.01 -0.18 8.05 -51.93 -0.42 -0.60 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.10 2.20 6.20 -51.93 -0.32 1.87 16 43 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.08 1.25 8.09 -51.93 -0.42 0.82 16 45 H 0.09 1.61 7.41 -51.93 -0.39 1.22 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -30.72 357.63 -9.13 -39.86 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.70 Total: 2.36 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -0.72 Total: -12.66 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: -0.31 Total: -38.20 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.77 Total: -13.64 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.72 -9.13 -39.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227898012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.746 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds