Wall clock time and date at job start Mon Mar 30 2020 05:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47024 * 2 1 4 4 C 1.53007 * 109.46890 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.46812 * 179.97438 * 4 3 2 6 6 C 1.42904 * 113.99793 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47098 * 180.02562 * 6 5 4 8 8 H 1.09009 * 109.46821 * 55.00186 * 7 6 5 9 9 O 1.42895 * 109.47263 * 295.00469 * 7 6 5 10 10 C 1.52994 * 109.47075 * 175.00030 * 7 6 5 11 11 N 1.46899 * 109.47367 * 190.56625 * 10 7 6 12 12 C 1.46893 * 111.00589 * 172.09287 * 11 10 7 13 13 C 1.50697 * 109.47656 * 196.04196 * 12 11 10 14 14 H 1.08004 * 119.99494 * 3.71532 * 13 12 11 15 15 C 1.37875 * 120.00180 * 183.72072 * 13 12 11 16 16 N 1.31510 * 120.00504 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99668 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47447 * 60.00132 * 17 15 13 19 19 H 1.48508 * 109.46851 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47194 * 299.99525 * 17 15 13 21 21 C 1.46905 * 110.99768 * 296.04687 * 11 10 7 22 22 C 1.52995 * 117.49996 * 154.73431 * 21 11 10 23 23 C 1.53000 * 117.50053 * 86.10895 * 21 11 10 24 24 H 1.09002 * 109.47073 * 60.00024 * 1 2 3 25 25 H 1.08994 * 109.46970 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47078 * 300.00559 * 1 2 3 27 27 H 1.08998 * 109.47755 * 239.99767 * 2 1 3 28 28 H 1.09008 * 109.47099 * 119.99260 * 2 1 3 29 29 H 1.08998 * 109.47649 * 59.99790 * 3 2 1 30 30 H 1.08998 * 109.47307 * 299.99424 * 3 2 1 31 31 H 1.09001 * 109.46914 * 60.00441 * 4 3 2 32 32 H 1.08995 * 109.47173 * 299.99504 * 4 3 2 33 33 H 1.09002 * 109.46981 * 60.00336 * 6 5 4 34 34 H 1.08995 * 109.47214 * 300.00505 * 6 5 4 35 35 H 0.96706 * 114.00084 * 300.00070 * 9 7 6 36 36 H 1.09000 * 109.47326 * 310.56443 * 10 7 6 37 37 H 1.09000 * 109.47242 * 70.56727 * 10 7 6 38 38 H 1.09004 * 109.47189 * 316.04045 * 12 11 10 39 39 H 1.09000 * 109.47296 * 76.03413 * 12 11 10 40 40 H 0.96995 * 120.00598 * 179.97438 * 16 15 13 41 41 H 1.09007 * 115.54513 * 300.43975 * 21 11 10 42 42 H 1.08998 * 117.50472 * 359.97438 * 22 21 11 43 43 H 1.08999 * 117.50324 * 145.02261 * 22 21 11 44 44 H 1.09004 * 117.49542 * 214.97844 * 23 21 11 45 45 H 1.08991 * 117.49794 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.4709 2.9026 0.0000 7 6 5.8654 4.3809 0.0000 8 1 5.3896 4.8839 0.8419 9 8 5.4380 4.9880 -1.2210 10 6 7.3853 4.5031 0.1256 11 7 7.7446 5.9047 0.3793 12 6 9.1742 6.0336 0.6914 13 6 9.4318 7.3784 1.3208 14 1 8.6071 8.0441 1.5287 15 6 10.7202 7.7589 1.6311 16 7 11.7243 6.9482 1.3783 17 14 11.0394 9.4262 2.4106 18 1 10.3178 9.5136 3.7056 19 1 12.4965 9.5925 2.6443 20 1 10.5578 10.4977 1.5023 21 6 7.3752 6.7571 -0.7588 22 6 7.1168 8.2385 -0.4772 23 6 5.9473 7.3052 -0.7968 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9286 -0.8892 32 1 3.9330 0.9289 0.8909 33 1 5.8736 2.4187 -0.8898 34 1 5.8737 2.4194 0.8901 35 1 5.8227 4.5900 -2.0139 36 1 7.7325 3.8837 0.9526 37 1 7.8544 4.1696 -0.8000 38 1 9.4671 5.2457 1.3852 39 1 9.7559 5.9444 -0.2261 40 1 12.6307 7.2160 1.5962 41 1 7.8408 6.4989 -1.7100 42 1 7.2204 8.5808 0.5524 43 1 7.4123 8.9555 -1.2432 44 1 5.4736 7.4081 -1.7731 45 1 5.2818 7.0331 0.0224 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227898012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:37 Heat of formation + Delta-G solvation = -99.285455 kcal Electronic energy + Delta-G solvation = -21295.569595 eV Core-core repulsion = 18119.937617 eV Total energy + Delta-G solvation = -3175.631977 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.13936 -38.92770 -37.19692 -35.68696 -35.38002 -34.24656 -31.53350 -30.00818 -28.59359 -25.77472 -24.17240 -24.00094 -22.92242 -22.69980 -21.86639 -21.14784 -18.62168 -17.64793 -17.56856 -17.00010 -16.73575 -16.56369 -16.16980 -15.85592 -15.67468 -15.12736 -15.00830 -14.47601 -14.11180 -14.01458 -13.74542 -13.57224 -13.16714 -12.92267 -12.83644 -12.71203 -12.55556 -12.33267 -12.27638 -11.96409 -11.89722 -11.83772 -11.57920 -11.51393 -11.39697 -11.09254 -10.84813 -10.55511 -10.53905 -10.18804 -9.02560 -8.16129 -6.23441 1.41152 1.43982 1.51382 2.40383 2.54220 3.16324 3.22813 3.30312 3.61661 3.92396 3.99801 4.09902 4.17445 4.19718 4.30457 4.33839 4.37432 4.43068 4.45069 4.46978 4.53342 4.69103 4.71938 4.74041 4.92726 4.95481 4.96126 5.04940 5.05300 5.09412 5.23000 5.24967 5.26741 5.35730 5.42644 5.45236 5.57049 5.77092 6.10307 6.27178 6.43813 6.67306 6.92579 6.94627 7.44881 8.94687 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.034930 B = 0.003115 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.401165 B = 8986.000786 C = 9336.868173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.116 4.116 4 C 0.055 3.945 5 O -0.400 6.400 6 C 0.040 3.960 7 C 0.132 3.868 8 H 0.090 0.910 9 O -0.546 6.546 10 C 0.032 3.968 11 N -0.516 5.516 12 C 0.211 3.789 13 C -0.508 4.508 14 H 0.068 0.932 15 C -0.002 4.002 16 N -0.938 5.938 17 Si 0.963 3.037 18 H -0.270 1.270 19 H -0.285 1.285 20 H -0.268 1.268 21 C 0.018 3.982 22 C -0.184 4.184 23 C -0.093 4.093 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.374 0.626 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.001 0.999 39 H -0.037 1.037 40 H 0.262 0.738 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.129 -12.334 -5.426 22.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.154 4.154 4 C -0.021 4.021 5 O -0.320 6.320 6 C -0.037 4.037 7 C 0.072 3.928 8 H 0.107 0.893 9 O -0.351 6.351 10 C -0.096 4.096 11 N -0.241 5.241 12 C 0.085 3.915 13 C -0.547 4.547 14 H 0.086 0.914 15 C -0.199 4.199 16 N -0.580 5.580 17 Si 0.788 3.212 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.193 1.193 21 C -0.091 4.091 22 C -0.221 4.221 23 C -0.130 4.130 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.222 0.778 36 H 0.092 0.908 37 H 0.052 0.948 38 H 0.019 0.981 39 H -0.019 1.019 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.121 0.879 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.669 -11.665 -4.586 22.487 hybrid contribution 1.946 -0.188 -0.490 2.016 sum -16.723 -11.853 -5.076 21.117 Atomic orbital electron populations 1.21763 0.94994 1.02253 1.01981 1.21433 0.96603 0.94898 1.02693 1.21538 0.92936 0.98176 1.02721 1.22695 0.95663 0.83052 1.00700 1.87911 1.20966 1.27553 1.95538 1.23151 0.81666 0.97197 1.01714 1.21579 0.91494 0.91103 0.88580 0.89254 1.86731 1.72331 1.60853 1.15227 1.22659 0.96234 0.90469 1.00255 1.61808 1.19433 1.06097 1.36742 1.19352 0.82700 0.96404 0.93017 1.21532 0.92560 1.01999 1.38580 0.91383 1.25864 0.96008 1.01183 0.96811 1.70073 0.99603 1.38329 1.49981 0.85532 0.76784 0.79759 0.79144 1.19472 1.21072 1.19337 1.21984 1.00760 0.94705 0.91670 1.23094 1.04559 0.92762 1.01735 1.22579 0.89126 0.99157 1.02187 0.92654 0.91700 0.92783 0.91241 0.91413 0.91977 0.91741 0.92569 0.92898 0.91611 0.91941 0.77784 0.90807 0.94803 0.98052 1.01947 0.92949 0.92160 0.90386 0.89268 0.87864 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.99 16 2 C -0.12 -1.45 5.93 30.59 0.18 -1.27 16 3 C -0.12 -1.92 5.58 30.60 0.17 -1.75 16 4 C 0.06 1.02 5.94 71.98 0.43 1.45 16 5 O -0.40 -10.01 10.31 -144.34 -1.49 -11.50 16 6 C 0.04 0.92 5.56 71.98 0.40 1.32 16 7 C 0.13 3.76 2.77 30.59 0.08 3.85 16 8 H 0.09 2.95 7.90 -2.38 -0.02 2.93 16 9 O -0.55 -14.82 8.91 -144.34 -1.29 -16.10 16 10 C 0.03 1.10 4.76 86.30 0.41 1.52 16 11 N -0.52 -22.37 4.59 -875.54 -4.02 -26.39 16 12 C 0.21 11.32 4.74 85.56 0.41 11.73 16 13 C -0.51 -28.98 8.35 25.60 0.21 -28.76 16 14 H 0.07 3.82 5.52 -2.91 -0.02 3.80 16 15 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 16 N -0.94 -57.10 13.29 21.45 0.28 -56.82 16 17 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 21 C 0.02 0.70 3.90 44.91 0.18 0.87 16 22 C -0.18 -7.15 9.39 30.59 0.29 -6.86 16 23 C -0.09 -3.09 7.20 30.59 0.22 -2.87 16 24 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.36 8.11 -2.39 -0.02 1.34 16 35 H 0.37 7.87 9.05 -74.05 -0.67 7.20 16 36 H 0.07 2.51 7.85 -2.39 -0.02 2.49 16 37 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.00 0.08 7.84 -2.38 -0.02 0.06 16 39 H -0.04 -2.19 8.05 -2.39 -0.02 -2.20 16 40 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 41 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 42 H 0.08 3.40 6.20 -2.39 -0.01 3.39 16 43 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 44 H 0.10 2.96 8.09 -2.38 -0.02 2.94 16 45 H 0.08 2.87 7.41 -2.39 -0.02 2.85 16 Total: -1.00 -66.12 357.63 -0.06 -66.19 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.27 Total: 18.88 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 4.15 Total: -21.40 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -3.74 Total: -83.21 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -2.77 Total: -27.60 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -66.12 -0.06 -66.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227898012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.099 kcal (2) G-P(sol) polarization free energy of solvation -66.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds