Wall clock time and date at job start Mon Mar 30 2020 05:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86792 * 120.00381 * 2 1 4 4 H 1.48501 * 109.47042 * 270.00145 * 3 2 1 5 5 H 1.48502 * 109.47292 * 30.00102 * 3 2 1 6 6 H 1.48499 * 109.47394 * 150.00114 * 3 2 1 7 7 C 1.38952 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99699 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00406 * 359.72211 * 7 2 1 10 10 C 1.34778 * 120.00266 * 180.27395 * 9 7 2 11 11 O 1.21294 * 120.00006 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00233 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47251 * 175.75406 * 12 10 9 14 14 C 1.46903 * 111.00045 * 200.00550 * 13 12 10 15 15 C 1.53005 * 109.46709 * 75.75863 * 14 13 12 16 16 O 1.42899 * 109.47021 * 64.28936 * 15 14 13 17 17 C 1.46899 * 110.99956 * 76.05008 * 13 12 10 18 18 C 1.52997 * 109.47210 * 189.99874 * 17 13 12 19 19 H 1.09006 * 110.36967 * 297.35457 * 18 17 13 20 20 C 1.54377 * 110.41266 * 175.00032 * 18 17 13 21 21 C 1.54262 * 105.06327 * 217.36923 * 20 18 17 22 22 C 1.54384 * 105.05679 * 0.02562 * 21 20 18 23 23 N 1.48557 * 104.59820 * 23.84678 * 22 21 20 24 24 H 0.97010 * 119.99817 * 359.97438 * 1 2 3 25 25 H 0.96998 * 120.00150 * 0.27968 * 9 7 2 26 26 H 1.09001 * 109.46767 * 295.75684 * 12 10 9 27 27 H 1.08998 * 109.46711 * 55.75084 * 12 10 9 28 28 H 1.08995 * 109.47104 * 195.75609 * 14 13 12 29 29 H 1.08999 * 109.47213 * 315.76267 * 14 13 12 30 30 H 1.09002 * 109.46563 * 184.29023 * 15 14 13 31 31 H 1.08999 * 109.47309 * 304.28258 * 15 14 13 32 32 H 0.96703 * 113.99624 * 179.97438 * 16 15 14 33 33 H 1.08996 * 109.47551 * 310.00050 * 17 13 12 34 34 H 1.09000 * 109.46942 * 70.00385 * 17 13 12 35 35 H 1.08996 * 110.32255 * 336.26979 * 20 18 17 36 36 H 1.09004 * 110.32054 * 98.37191 * 20 18 17 37 37 H 1.08995 * 110.32568 * 118.89678 * 21 20 18 38 38 H 1.08996 * 110.32512 * 241.10890 * 21 20 18 39 39 H 1.08995 * 110.41035 * 142.63036 * 22 21 20 40 40 H 1.09002 * 110.40779 * 264.95198 * 22 21 20 41 41 H 1.00899 * 111.00524 * 200.95760 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4400 0.7000 7 6 2.0087 -1.2034 -0.0005 8 1 3.0887 -1.2035 -0.0010 9 7 1.3232 -2.3907 0.0047 10 6 1.9970 -3.5579 0.0097 11 8 3.2099 -3.5580 0.0101 12 6 1.2434 -4.8630 0.0161 13 7 2.1946 -5.9781 -0.0818 14 6 1.5267 -7.2004 -0.5487 15 6 1.2652 -7.0958 -2.0526 16 8 2.5112 -7.0388 -2.7499 17 6 2.8725 -6.2060 1.2014 18 6 4.0221 -7.1957 1.0022 19 1 3.6388 -8.1610 0.6713 20 6 4.8275 -7.3557 2.3095 21 6 6.2974 -7.4893 1.8611 22 6 6.2566 -7.3981 0.3204 23 7 5.0022 -6.6602 0.0222 24 1 -0.4850 0.8401 0.0004 25 1 0.3532 -2.3907 0.0047 26 1 0.6755 -4.9500 0.9423 27 1 0.5606 -4.8923 -0.8330 28 1 2.1645 -8.0616 -0.3499 29 1 0.5796 -7.3205 -0.0227 30 1 0.7023 -7.9681 -2.3849 31 1 0.6912 -6.1926 -2.2596 32 1 2.4216 -6.9719 -3.7104 33 1 3.2669 -5.2618 1.5768 34 1 2.1620 -6.6144 1.9201 35 1 4.7027 -6.4761 2.9410 36 1 4.5097 -8.2518 2.8426 37 1 6.8942 -6.6752 2.2724 38 1 6.7024 -8.4519 2.1731 39 1 7.1199 -6.8459 -0.0507 40 1 6.2267 -8.3953 -0.1187 41 1 4.6977 -6.8322 -0.9243 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236499467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:41 Heat of formation + Delta-G solvation = -70.621715 kcal Electronic energy + Delta-G solvation = -21869.926758 eV Core-core repulsion = 18591.997390 eV Total energy + Delta-G solvation = -3277.929367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.08053 -37.86605 -36.96012 -35.38746 -33.66029 -31.09760 -30.33060 -29.92059 -29.15325 -26.59184 -24.44170 -23.49115 -21.44411 -20.59985 -19.67234 -18.96659 -17.74049 -17.23645 -16.51210 -16.20862 -15.60713 -14.91453 -14.60490 -14.40470 -14.10657 -13.81429 -13.53534 -13.23254 -13.07562 -12.72661 -12.64595 -11.91666 -11.79329 -11.63951 -11.46730 -11.38904 -11.27753 -11.01374 -10.92412 -10.89514 -10.42476 -10.30619 -10.28676 -10.09030 -9.77540 -9.33628 -8.28479 -7.99995 -7.80244 -7.64556 -6.28987 -3.68365 3.26255 3.33614 3.40332 3.98182 4.12316 4.32405 4.42355 4.56494 4.89212 4.96045 5.11418 5.18203 5.22399 5.33694 5.34084 5.41639 5.44397 5.62866 5.66933 5.72089 5.76949 5.80172 5.92287 5.94142 6.02139 6.05658 6.07445 6.21063 6.29861 6.43923 6.56380 7.18569 7.42134 7.54512 7.67684 7.83153 7.89753 8.21301 8.78526 9.33679 9.71026 10.25522 10.89522 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.018437 B = 0.005013 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.288927 B = 5584.361798 C = 6419.338554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.019 3.981 3 Si 0.927 3.073 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.290 4.290 8 H 0.102 0.898 9 N -0.575 5.575 10 C 0.447 3.553 11 O -0.555 6.555 12 C 0.044 3.956 13 N -0.496 5.496 14 C 0.047 3.953 15 C 0.084 3.916 16 O -0.555 6.555 17 C 0.074 3.926 18 C 0.078 3.922 19 H 0.037 0.963 20 C -0.121 4.121 21 C -0.121 4.121 22 C 0.032 3.968 23 N -0.630 5.630 24 H 0.269 0.731 25 H 0.389 0.611 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.371 0.629 33 H 0.099 0.901 34 H 0.022 0.978 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.028 0.972 41 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.051 -17.076 -0.002 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.182 4.182 3 Si 0.755 3.245 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.420 4.420 8 H 0.120 0.880 9 N -0.213 5.213 10 C 0.231 3.769 11 O -0.436 6.436 12 C -0.088 4.088 13 N -0.219 5.219 14 C -0.082 4.082 15 C 0.005 3.995 16 O -0.359 6.359 17 C -0.054 4.054 18 C -0.033 4.033 19 H 0.054 0.946 20 C -0.160 4.160 21 C -0.160 4.160 22 C -0.098 4.098 23 N -0.261 5.261 24 H 0.078 0.922 25 H 0.222 0.778 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.216 0.784 33 H 0.117 0.883 34 H 0.040 0.960 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.046 0.954 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.518 -16.181 0.607 16.570 hybrid contribution -1.472 -0.251 -0.380 1.541 sum 2.046 -16.431 0.227 16.560 Atomic orbital electron populations 1.69618 1.05872 1.27786 1.51762 1.25200 0.95587 0.99504 0.97890 0.85896 0.79219 0.81115 0.78278 1.20560 1.21127 1.19515 1.19680 0.93294 0.82295 1.46752 0.88036 1.41868 1.08964 1.04574 1.65907 1.19780 0.88644 0.84358 0.84074 1.90593 1.13159 1.86675 1.53161 1.21919 0.94052 0.92098 1.00720 1.61429 1.28454 1.02820 1.29239 1.22248 0.97714 0.94154 0.94039 1.22156 0.86043 0.98899 0.92382 1.86588 1.29732 1.97167 1.22369 1.22159 0.93625 1.00808 0.88846 1.22385 0.93200 0.94873 0.92801 0.94559 1.22318 0.94883 1.01617 0.97168 1.22245 0.96801 1.01169 0.95749 1.22907 0.95514 0.95939 0.95426 1.63545 1.01269 1.53640 1.07628 0.92159 0.77830 0.93635 0.89966 0.90469 0.93830 0.94232 0.93580 0.78371 0.88300 0.96047 0.90842 0.92071 0.91173 0.92138 0.90659 0.95410 0.83250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.32 13.05 55.50 0.72 -24.60 16 2 C 0.02 0.51 5.50 -17.47 -0.10 0.42 16 3 Si 0.93 21.71 29.55 -169.99 -5.02 16.69 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.29 -8.31 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 9 N -0.57 -14.94 5.29 -10.96 -0.06 -15.00 16 10 C 0.45 10.84 7.52 -10.98 -0.08 10.76 16 11 O -0.55 -15.42 14.63 5.55 0.08 -15.34 16 12 C 0.04 0.80 5.30 -4.98 -0.03 0.77 16 13 N -0.50 -8.39 3.83 -236.08 -0.90 -9.29 16 14 C 0.05 0.62 5.22 -3.82 -0.02 0.60 16 15 C 0.08 1.02 7.22 37.16 0.27 1.28 16 16 O -0.55 -7.46 13.60 -35.23 -0.48 -7.94 16 17 C 0.07 1.22 4.18 -3.83 -0.02 1.21 16 18 C 0.08 1.14 3.00 -66.06 -0.20 0.95 16 19 H 0.04 0.50 6.41 -51.93 -0.33 0.17 16 20 C -0.12 -1.55 6.55 -25.35 -0.17 -1.72 16 21 C -0.12 -1.47 7.00 -25.35 -0.18 -1.65 16 22 C 0.03 0.43 7.47 -2.18 -0.02 0.41 16 23 N -0.63 -10.42 7.15 -102.73 -0.73 -11.15 16 24 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 26 H 0.05 0.77 7.99 -51.93 -0.42 0.35 16 27 H 0.08 1.37 6.45 -51.93 -0.33 1.04 16 28 H 0.08 0.98 5.94 -51.93 -0.31 0.67 16 29 H 0.04 0.51 8.00 -51.93 -0.42 0.09 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.59 6.67 -51.93 -0.35 0.24 16 32 H 0.37 3.39 9.12 45.56 0.42 3.81 16 33 H 0.10 2.03 6.55 -51.93 -0.34 1.69 16 34 H 0.02 0.32 8.12 -51.93 -0.42 -0.11 16 35 H 0.07 1.01 7.82 -51.93 -0.41 0.60 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.35 6.04 8.92 -39.29 -0.35 5.69 16 LS Contribution 331.25 15.07 4.99 4.99 Total: -1.00 -33.14 331.25 -7.70 -40.84 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -5.63 Total: 16.24 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -0.67 Total: 4.57 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.97 Total: -60.05 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.40 Total: -23.28 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.14 -7.70 -40.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236499467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.785 kcal (2) G-P(sol) polarization free energy of solvation -33.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds