Wall clock time and date at job start Mon Mar 30 2020 05:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86792 * 120.00381 * 2 1 4 4 H 1.48501 * 109.47042 * 270.00145 * 3 2 1 5 5 H 1.48502 * 109.47292 * 30.00102 * 3 2 1 6 6 H 1.48499 * 109.47394 * 150.00114 * 3 2 1 7 7 C 1.38952 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99699 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00406 * 359.72211 * 7 2 1 10 10 C 1.34778 * 120.00266 * 180.27395 * 9 7 2 11 11 O 1.21294 * 120.00006 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00233 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47251 * 175.75406 * 12 10 9 14 14 C 1.46903 * 111.00045 * 200.00550 * 13 12 10 15 15 C 1.53005 * 109.46709 * 75.75863 * 14 13 12 16 16 O 1.42899 * 109.47021 * 64.28936 * 15 14 13 17 17 C 1.46899 * 110.99956 * 76.05008 * 13 12 10 18 18 C 1.52997 * 109.47210 * 189.99874 * 17 13 12 19 19 H 1.09006 * 110.36967 * 297.35457 * 18 17 13 20 20 C 1.54377 * 110.41266 * 175.00032 * 18 17 13 21 21 C 1.54262 * 105.06327 * 217.36923 * 20 18 17 22 22 C 1.54384 * 105.05679 * 0.02562 * 21 20 18 23 23 N 1.48557 * 104.59820 * 23.84678 * 22 21 20 24 24 H 0.97010 * 119.99817 * 359.97438 * 1 2 3 25 25 H 0.96998 * 120.00150 * 0.27968 * 9 7 2 26 26 H 1.09001 * 109.46767 * 295.75684 * 12 10 9 27 27 H 1.08998 * 109.46711 * 55.75084 * 12 10 9 28 28 H 1.08995 * 109.47104 * 195.75609 * 14 13 12 29 29 H 1.08999 * 109.47213 * 315.76267 * 14 13 12 30 30 H 1.09002 * 109.46563 * 184.29023 * 15 14 13 31 31 H 1.08999 * 109.47309 * 304.28258 * 15 14 13 32 32 H 0.96703 * 113.99624 * 179.97438 * 16 15 14 33 33 H 1.08996 * 109.47551 * 310.00050 * 17 13 12 34 34 H 1.09000 * 109.46942 * 70.00385 * 17 13 12 35 35 H 1.08996 * 110.32255 * 336.26979 * 20 18 17 36 36 H 1.09004 * 110.32054 * 98.37191 * 20 18 17 37 37 H 1.08995 * 110.32568 * 118.89678 * 21 20 18 38 38 H 1.08996 * 110.32512 * 241.10890 * 21 20 18 39 39 H 1.08995 * 110.41035 * 142.63036 * 22 21 20 40 40 H 1.09002 * 110.40779 * 264.95198 * 22 21 20 41 41 H 1.00899 * 111.00524 * 200.95760 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4400 0.7000 7 6 2.0087 -1.2034 -0.0005 8 1 3.0887 -1.2035 -0.0010 9 7 1.3232 -2.3907 0.0047 10 6 1.9970 -3.5579 0.0097 11 8 3.2099 -3.5580 0.0101 12 6 1.2434 -4.8630 0.0161 13 7 2.1946 -5.9781 -0.0818 14 6 1.5267 -7.2004 -0.5487 15 6 1.2652 -7.0958 -2.0526 16 8 2.5112 -7.0388 -2.7499 17 6 2.8725 -6.2060 1.2014 18 6 4.0221 -7.1957 1.0022 19 1 3.6388 -8.1610 0.6713 20 6 4.8275 -7.3557 2.3095 21 6 6.2974 -7.4893 1.8611 22 6 6.2566 -7.3981 0.3204 23 7 5.0022 -6.6602 0.0222 24 1 -0.4850 0.8401 0.0004 25 1 0.3532 -2.3907 0.0047 26 1 0.6755 -4.9500 0.9423 27 1 0.5606 -4.8923 -0.8330 28 1 2.1645 -8.0616 -0.3499 29 1 0.5796 -7.3205 -0.0227 30 1 0.7023 -7.9681 -2.3849 31 1 0.6912 -6.1926 -2.2596 32 1 2.4216 -6.9719 -3.7104 33 1 3.2669 -5.2618 1.5768 34 1 2.1620 -6.6144 1.9201 35 1 4.7027 -6.4761 2.9410 36 1 4.5097 -8.2518 2.8426 37 1 6.8942 -6.6752 2.2724 38 1 6.7024 -8.4519 2.1731 39 1 7.1199 -6.8459 -0.0507 40 1 6.2267 -8.3953 -0.1187 41 1 4.6977 -6.8322 -0.9243 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236499467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:40 Heat of formation + Delta-G solvation = -99.929884 kcal Electronic energy + Delta-G solvation = -21871.197655 eV Core-core repulsion = 18591.997390 eV Total energy + Delta-G solvation = -3279.200265 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.50275 -39.40778 -38.13119 -36.61622 -35.71218 -33.17986 -31.47980 -31.01737 -30.42518 -28.05137 -26.27706 -24.70645 -22.60755 -21.72522 -20.91427 -20.66700 -19.78130 -18.29033 -17.78766 -17.60700 -16.97622 -16.54574 -16.09090 -15.77576 -15.58890 -15.39155 -15.11717 -14.48295 -14.31838 -13.98117 -13.70414 -13.58670 -13.28238 -13.13160 -12.85655 -12.79332 -12.61456 -12.41736 -12.35319 -12.12676 -12.10038 -11.90597 -11.60747 -11.37949 -11.29907 -10.71869 -10.15703 -9.90791 -9.19861 -8.97092 -8.40557 -5.87627 1.39735 1.41903 1.54995 2.18220 2.32298 2.78844 3.26486 3.40712 3.49157 3.55991 3.88406 3.90884 4.11762 4.20423 4.25077 4.29937 4.36154 4.45736 4.55623 4.59198 4.61397 4.70830 4.73095 4.79030 4.81728 4.96003 5.02800 5.04821 5.10581 5.26951 5.32980 5.46119 5.97876 6.08631 6.21768 6.37004 6.64691 6.70480 7.07464 7.22431 7.67303 8.26453 8.77413 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.018437 B = 0.005013 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.288927 B = 5584.361798 C = 6419.338554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.015 4.015 3 Si 0.990 3.010 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.276 1.276 7 C -0.324 4.324 8 H 0.074 0.926 9 N -0.584 5.584 10 C 0.443 3.557 11 O -0.595 6.595 12 C 0.057 3.943 13 N -0.514 5.514 14 C 0.046 3.954 15 C 0.082 3.918 16 O -0.580 6.580 17 C 0.077 3.923 18 C 0.081 3.919 19 H 0.055 0.945 20 C -0.120 4.120 21 C -0.118 4.118 22 C 0.031 3.969 23 N -0.663 5.663 24 H 0.275 0.725 25 H 0.393 0.607 26 H 0.065 0.935 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.387 0.613 33 H 0.050 0.950 34 H 0.042 0.958 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.046 0.954 41 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.349 -18.646 0.069 18.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.214 4.214 3 Si 0.814 3.186 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.201 1.201 7 C -0.454 4.454 8 H 0.092 0.908 9 N -0.223 5.223 10 C 0.230 3.770 11 O -0.479 6.479 12 C -0.075 4.075 13 N -0.239 5.239 14 C -0.081 4.081 15 C 0.004 3.996 16 O -0.387 6.387 17 C -0.051 4.051 18 C -0.029 4.029 19 H 0.073 0.927 20 C -0.159 4.159 21 C -0.156 4.156 22 C -0.098 4.098 23 N -0.293 5.293 24 H 0.085 0.915 25 H 0.226 0.774 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.235 0.765 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.790 -17.772 0.671 18.003 hybrid contribution -1.244 0.193 -0.429 1.330 sum 1.546 -17.579 0.242 17.648 Atomic orbital electron populations 1.69678 1.06715 1.28949 1.51362 1.25951 0.96513 1.02136 0.96809 0.84978 0.77831 0.77257 0.78558 1.19746 1.19522 1.20070 1.19594 0.92464 0.84178 1.49184 0.90785 1.41937 1.09048 1.04672 1.66643 1.20869 0.88544 0.85813 0.81788 1.90564 1.15320 1.87587 1.54405 1.21746 0.93760 0.89466 1.02491 1.61344 1.28907 1.04043 1.29583 1.22386 0.98593 0.92283 0.94870 1.22250 0.85732 0.99933 0.91701 1.86546 1.30836 1.97273 1.24006 1.22059 0.94768 0.99066 0.89248 1.22398 0.92488 0.94731 0.93279 0.92744 1.22344 0.95171 1.02141 0.96254 1.22258 0.96329 1.02393 0.94658 1.22953 0.93961 0.96393 0.96480 1.63529 1.02941 1.55376 1.07489 0.91546 0.77370 0.91765 0.87926 0.89736 0.91487 0.90826 0.94574 0.76540 0.93150 0.94001 0.92631 0.89225 0.92157 0.89246 0.91342 0.93565 0.84245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.42 13.05 21.66 0.28 -51.14 16 2 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 3 Si 0.99 44.68 29.55 68.60 2.03 46.70 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.32 -19.16 9.68 84.04 0.81 -18.34 16 8 H 0.07 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.58 -31.18 5.29 -306.98 -1.62 -32.81 16 10 C 0.44 22.08 7.52 87.66 0.66 22.74 16 11 O -0.60 -34.59 14.63 -3.07 -0.04 -34.63 16 12 C 0.06 2.05 5.30 85.56 0.45 2.50 16 13 N -0.51 -16.97 3.83 -900.81 -3.45 -20.42 16 14 C 0.05 1.09 5.22 86.30 0.45 1.54 16 15 C 0.08 1.79 7.22 71.98 0.52 2.31 16 16 O -0.58 -14.82 13.60 -148.98 -2.03 -16.85 16 17 C 0.08 2.52 4.18 86.30 0.36 2.88 16 18 C 0.08 2.30 3.00 45.06 0.13 2.43 16 19 H 0.05 1.35 6.41 -2.38 -0.02 1.33 16 20 C -0.12 -2.92 6.55 31.49 0.21 -2.72 16 21 C -0.12 -2.68 7.00 31.49 0.22 -2.46 16 22 C 0.03 0.81 7.47 86.45 0.65 1.46 16 23 N -0.66 -21.98 7.15 -478.94 -3.42 -25.40 16 24 H 0.28 14.32 8.31 -92.70 -0.77 13.55 16 25 H 0.39 19.93 7.90 -92.71 -0.73 19.20 16 26 H 0.06 2.08 7.99 -2.39 -0.02 2.06 16 27 H 0.10 3.28 6.45 -2.39 -0.02 3.26 16 28 H 0.08 1.90 5.94 -2.39 -0.01 1.88 16 29 H 0.07 1.30 8.00 -2.39 -0.02 1.28 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 31 H 0.04 0.85 6.67 -2.39 -0.02 0.84 16 32 H 0.39 6.62 9.12 -74.06 -0.68 5.94 16 33 H 0.05 2.15 6.55 -2.39 -0.02 2.13 16 34 H 0.04 1.17 8.12 -2.39 -0.02 1.15 16 35 H 0.05 1.53 7.82 -2.39 -0.02 1.51 16 36 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.34 11.86 8.92 -89.69 -0.80 11.06 16 Total: -1.00 -73.60 331.25 -4.47 -78.07 By element: Atomic # 1 Polarization: 45.64 SS G_CDS: -1.15 Total: 44.50 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 4.93 Total: 11.97 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -8.21 Total: -129.77 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -2.07 Total: -51.48 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -73.60 -4.47 -78.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236499467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.856 kcal (2) G-P(sol) polarization free energy of solvation -73.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds