Wall clock time and date at job start Mon Mar 30 2020 05:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99867 * 2 1 4 4 H 1.48506 * 109.47310 * 270.00005 * 3 2 1 5 5 H 1.48491 * 109.47296 * 30.00489 * 3 2 1 6 6 H 1.48502 * 109.46905 * 150.00533 * 3 2 1 7 7 C 1.37874 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99766 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46928 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99873 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99754 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00137 * 179.97438 * 11 10 9 14 14 N 1.46896 * 109.47452 * 179.97438 * 13 11 10 15 15 C 1.44068 * 110.99786 * 66.04557 * 14 13 11 16 16 C 1.54019 * 108.26877 * 219.69502 * 15 14 13 17 17 C 1.46287 * 112.02509 * 280.50172 * 16 15 14 18 18 O 1.44536 * 111.34528 * 59.66007 * 17 16 15 19 19 C 1.39989 * 112.89719 * 280.43307 * 18 17 16 20 20 H 1.08997 * 108.74792 * 333.62988 * 19 18 17 21 21 C 1.53002 * 108.74463 * 215.41023 * 19 18 17 22 22 N 1.46909 * 109.47011 * 65.00082 * 21 19 18 23 23 C 1.48519 * 111.00443 * 194.17661 * 14 13 11 24 24 H 0.97002 * 119.99998 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 26 26 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 27 27 H 0.96995 * 120.00050 * 359.72380 * 10 9 7 28 28 H 1.09004 * 109.47043 * 299.99732 * 13 11 10 29 29 H 1.09000 * 109.46978 * 59.99653 * 13 11 10 30 30 H 1.08997 * 109.70780 * 339.38927 * 15 14 13 31 31 H 1.09000 * 109.70584 * 99.96242 * 15 14 13 32 32 H 1.09005 * 108.96678 * 41.15381 * 16 15 14 33 33 H 1.08994 * 108.97166 * 159.92701 * 16 15 14 34 34 H 1.09003 * 109.10071 * 180.13439 * 17 16 15 35 35 H 1.08994 * 109.10622 * 299.17536 * 17 16 15 36 36 H 1.08994 * 109.47472 * 184.99879 * 21 19 18 37 37 H 1.08997 * 109.47457 * 305.00349 * 21 19 18 38 38 H 1.00900 * 111.00004 * 56.04570 * 22 21 19 39 39 H 1.00896 * 110.99467 * 180.02562 * 22 21 19 40 40 H 1.09009 * 108.98884 * 313.10236 * 23 14 13 41 41 H 1.08996 * 108.98934 * 71.82895 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0022 11 6 5.3249 -2.8215 -0.0024 12 8 6.1130 -1.8997 -0.0021 13 6 5.8273 -4.2423 -0.0030 14 7 7.2962 -4.2424 -0.0036 15 6 7.8131 -3.6966 1.2254 16 6 9.0366 -2.8236 0.8892 17 6 10.2390 -3.6266 0.6666 18 8 10.0565 -4.5556 -0.4256 19 6 9.3385 -5.6985 -0.0542 20 1 9.4771 -5.8677 1.0135 21 6 9.8978 -6.9003 -0.8183 22 7 11.2831 -7.1473 -0.3962 23 6 7.8284 -5.5866 -0.3438 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8746 -0.6800 -0.8912 27 1 3.3696 -3.3125 0.0016 28 1 5.4640 -4.7565 0.8869 29 1 5.4638 -4.7558 -0.8931 30 1 7.0484 -3.0875 1.7074 31 1 8.1108 -4.5069 1.8909 32 1 8.8238 -2.2471 -0.0112 33 1 9.2190 -2.1360 1.7150 34 1 11.0728 -2.9637 0.4355 35 1 10.4688 -4.1841 1.5745 36 1 9.2909 -7.7804 -0.6058 37 1 9.8755 -6.6932 -1.8881 38 1 11.3389 -7.2783 0.6027 39 1 11.6754 -7.9366 -0.8872 40 1 7.2982 -6.3368 0.2431 41 1 7.6549 -5.7792 -1.4025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313349133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:16 Heat of formation + Delta-G solvation = -66.716436 kcal Electronic energy + Delta-G solvation = -21472.561389 eV Core-core repulsion = 18194.801367 eV Total energy + Delta-G solvation = -3277.760022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.07627 -38.75781 -36.08816 -35.11019 -34.18378 -32.53233 -32.30032 -30.03774 -28.21866 -26.58815 -25.94666 -23.11312 -21.84993 -21.50134 -20.44743 -19.76616 -17.45528 -16.97575 -16.54100 -16.32760 -15.70176 -15.52149 -15.08039 -14.80034 -14.49632 -14.45477 -13.94358 -13.72085 -13.54578 -13.14341 -12.89987 -12.65683 -12.51552 -12.34270 -12.22355 -11.77035 -11.24257 -11.03467 -10.93719 -10.78091 -10.70613 -10.53105 -9.96768 -9.58454 -9.49061 -9.12251 -8.98707 -8.77192 -8.16254 -8.08230 -6.21549 -4.23700 3.25738 3.29557 3.33659 3.42446 3.46400 3.67431 4.17552 4.28674 4.34057 4.77541 4.87084 4.89092 4.94528 4.97942 5.13208 5.14104 5.25537 5.28589 5.32528 5.41834 5.48321 5.52987 5.62750 5.69926 5.83335 5.95373 6.11047 6.54353 6.73626 6.79955 6.99243 7.06311 7.08710 7.25643 7.26938 7.32325 7.40950 8.15697 8.53771 8.76072 8.98812 9.39001 10.90426 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.042139 B = 0.003555 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.301030 B = 7874.211735 C = 8343.732802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.223 3.777 10 N -0.709 5.709 11 C 0.499 3.501 12 O -0.537 6.537 13 C 0.040 3.960 14 N -0.527 5.527 15 C 0.074 3.926 16 C -0.147 4.147 17 C 0.069 3.931 18 O -0.344 6.344 19 C 0.099 3.901 20 H 0.048 0.952 21 C 0.062 3.938 22 N -0.843 5.843 23 C 0.041 3.959 24 H 0.267 0.733 25 H 0.023 0.977 26 H 0.020 0.980 27 H 0.395 0.605 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.027 0.973 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.041 0.959 36 H 0.037 0.963 37 H 0.084 0.916 38 H 0.336 0.664 39 H 0.342 0.658 40 H 0.040 0.960 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.701 -15.259 2.364 24.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.101 3.899 10 N -0.359 5.359 11 C 0.283 3.717 12 O -0.414 6.414 13 C -0.091 4.091 14 N -0.252 5.252 15 C -0.055 4.055 16 C -0.186 4.186 17 C -0.007 4.007 18 O -0.262 6.262 19 C 0.038 3.962 20 H 0.066 0.934 21 C -0.070 4.070 22 N -0.372 5.372 23 C -0.087 4.087 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.038 0.962 27 H 0.228 0.772 28 H 0.075 0.925 29 H 0.117 0.883 30 H 0.096 0.904 31 H 0.045 0.955 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.102 0.898 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.058 0.942 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 19.465 -13.387 1.540 23.675 hybrid contribution -0.948 -0.971 1.196 1.808 sum 18.517 -14.358 2.736 23.591 Atomic orbital electron populations 1.69882 1.06229 1.27424 1.49527 1.24802 0.94790 0.99204 0.93868 0.86804 0.80530 0.83185 0.79090 1.19818 1.20951 1.18518 1.21102 0.88599 0.95180 1.53235 0.90313 1.19451 0.95105 0.78695 0.96681 1.46173 1.05656 1.10952 1.73126 1.20354 0.83050 0.90668 0.77653 1.90652 1.55279 1.45885 1.49604 1.21979 0.88618 0.95913 1.02585 1.60111 1.05270 1.23542 1.36273 1.21669 0.97917 0.96692 0.89190 1.21133 0.94422 0.99169 1.03833 1.21617 0.97897 0.92096 0.89088 1.87860 1.72998 1.30056 1.35267 1.21732 0.89854 0.87075 0.97515 0.93404 1.21940 0.88716 0.95046 1.01270 1.58537 1.19583 1.48523 1.10581 1.23117 0.94918 0.88707 1.01987 0.92272 0.95875 0.96177 0.77201 0.92477 0.88307 0.90367 0.95454 0.88988 0.91262 0.89541 0.94084 0.94499 0.89765 0.85158 0.84534 0.94211 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.96 55.43 0.77 -25.81 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.54 -14.92 9.83 -34.44 -0.34 -15.26 16 8 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16 9 C 0.22 5.49 4.50 -5.19 -0.02 5.47 16 10 N -0.71 -14.25 5.55 -61.47 -0.34 -14.59 16 11 C 0.50 9.41 7.19 -10.99 -0.08 9.33 16 12 O -0.54 -12.02 14.89 5.55 0.08 -11.93 16 13 C 0.04 0.55 5.34 -4.98 -0.03 0.53 16 14 N -0.53 -7.35 3.90 -235.58 -0.92 -8.27 16 15 C 0.07 1.01 4.48 -4.80 -0.02 0.98 16 16 C -0.15 -1.97 5.62 -29.39 -0.17 -2.13 16 17 C 0.07 0.80 6.21 33.97 0.21 1.01 16 18 O -0.34 -4.50 10.03 -32.90 -0.33 -4.83 16 19 C 0.10 1.02 2.15 -26.12 -0.06 0.96 16 20 H 0.05 0.46 6.55 -51.93 -0.34 0.12 16 21 C 0.06 0.51 6.30 -3.82 -0.02 0.49 16 22 N -0.84 -6.46 9.55 -10.37 -0.10 -6.56 16 23 C 0.04 0.44 5.18 -2.32 -0.01 0.43 16 24 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 26 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 27 H 0.39 6.93 8.32 -40.82 -0.34 6.59 16 28 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 29 H 0.10 1.18 8.03 -51.93 -0.42 0.77 16 30 H 0.08 1.23 6.26 -51.93 -0.33 0.90 16 31 H 0.03 0.32 6.89 -51.93 -0.36 -0.04 16 32 H 0.09 1.53 8.11 -51.93 -0.42 1.11 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.04 0.41 7.47 -51.93 -0.39 0.02 16 36 H 0.04 0.24 8.12 -51.93 -0.42 -0.18 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.34 2.15 8.98 -39.29 -0.35 1.80 16 39 H 0.34 1.95 9.08 -39.29 -0.36 1.60 16 40 H 0.04 0.36 8.04 -51.92 -0.42 -0.06 16 41 H 0.08 0.86 7.98 -51.93 -0.41 0.44 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -33.25 325.63 -7.81 -41.06 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -6.59 Total: 5.24 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -0.63 Total: 3.89 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.58 Total: -55.24 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.25 Total: -16.77 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.25 -7.81 -41.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313349133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.659 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds