Wall clock time and date at job start Mon Mar 30 2020 05:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99867 * 2 1 4 4 H 1.48506 * 109.47310 * 270.00005 * 3 2 1 5 5 H 1.48491 * 109.47296 * 30.00489 * 3 2 1 6 6 H 1.48502 * 109.46905 * 150.00533 * 3 2 1 7 7 C 1.37874 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99766 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46928 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99873 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99754 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00137 * 179.97438 * 11 10 9 14 14 N 1.46896 * 109.47452 * 179.97438 * 13 11 10 15 15 C 1.44068 * 110.99786 * 66.04557 * 14 13 11 16 16 C 1.54019 * 108.26877 * 219.69502 * 15 14 13 17 17 C 1.46287 * 112.02509 * 280.50172 * 16 15 14 18 18 O 1.44536 * 111.34528 * 59.66007 * 17 16 15 19 19 C 1.39989 * 112.89719 * 280.43307 * 18 17 16 20 20 H 1.08997 * 108.74792 * 333.62988 * 19 18 17 21 21 C 1.53002 * 108.74463 * 215.41023 * 19 18 17 22 22 N 1.46909 * 109.47011 * 65.00082 * 21 19 18 23 23 C 1.48519 * 111.00443 * 194.17661 * 14 13 11 24 24 H 0.97002 * 119.99998 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 26 26 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 27 27 H 0.96995 * 120.00050 * 359.72380 * 10 9 7 28 28 H 1.09004 * 109.47043 * 299.99732 * 13 11 10 29 29 H 1.09000 * 109.46978 * 59.99653 * 13 11 10 30 30 H 1.08997 * 109.70780 * 339.38927 * 15 14 13 31 31 H 1.09000 * 109.70584 * 99.96242 * 15 14 13 32 32 H 1.09005 * 108.96678 * 41.15381 * 16 15 14 33 33 H 1.08994 * 108.97166 * 159.92701 * 16 15 14 34 34 H 1.09003 * 109.10071 * 180.13439 * 17 16 15 35 35 H 1.08994 * 109.10622 * 299.17536 * 17 16 15 36 36 H 1.08994 * 109.47472 * 184.99879 * 21 19 18 37 37 H 1.08997 * 109.47457 * 305.00349 * 21 19 18 38 38 H 1.00900 * 111.00004 * 56.04570 * 22 21 19 39 39 H 1.00896 * 110.99467 * 180.02562 * 22 21 19 40 40 H 1.09009 * 108.98884 * 313.10236 * 23 14 13 41 41 H 1.08996 * 108.98934 * 71.82895 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0022 11 6 5.3249 -2.8215 -0.0024 12 8 6.1130 -1.8997 -0.0021 13 6 5.8273 -4.2423 -0.0030 14 7 7.2962 -4.2424 -0.0036 15 6 7.8131 -3.6966 1.2254 16 6 9.0366 -2.8236 0.8892 17 6 10.2390 -3.6266 0.6666 18 8 10.0565 -4.5556 -0.4256 19 6 9.3385 -5.6985 -0.0542 20 1 9.4771 -5.8677 1.0135 21 6 9.8978 -6.9003 -0.8183 22 7 11.2831 -7.1473 -0.3962 23 6 7.8284 -5.5866 -0.3438 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8746 -0.6800 -0.8912 27 1 3.3696 -3.3125 0.0016 28 1 5.4640 -4.7565 0.8869 29 1 5.4638 -4.7558 -0.8931 30 1 7.0484 -3.0875 1.7074 31 1 8.1108 -4.5069 1.8909 32 1 8.8238 -2.2471 -0.0112 33 1 9.2190 -2.1360 1.7150 34 1 11.0728 -2.9637 0.4355 35 1 10.4688 -4.1841 1.5745 36 1 9.2909 -7.7804 -0.6058 37 1 9.8755 -6.6932 -1.8881 38 1 11.3389 -7.2783 0.6027 39 1 11.6754 -7.9366 -0.8872 40 1 7.2982 -6.3368 0.2431 41 1 7.6549 -5.7792 -1.4025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313349133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:16 Heat of formation + Delta-G solvation = -95.612276 kcal Electronic energy + Delta-G solvation = -21473.814406 eV Core-core repulsion = 18194.801367 eV Total energy + Delta-G solvation = -3279.013040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.15805 -40.08729 -37.18615 -36.00073 -35.83494 -34.39854 -33.35223 -31.19990 -29.81825 -27.72672 -26.95923 -24.33728 -23.39555 -22.41304 -21.54877 -21.19012 -19.18538 -18.07487 -17.64216 -17.53358 -16.90405 -16.90000 -16.30477 -15.96242 -15.80398 -15.52464 -15.17525 -14.85991 -14.67749 -14.50519 -14.25801 -14.14887 -13.75455 -13.50351 -13.28795 -13.05873 -12.92670 -12.69392 -12.23596 -11.94678 -11.89788 -11.65856 -11.65155 -11.44455 -10.92612 -10.71917 -10.41473 -9.87694 -9.52883 -9.11959 -8.40954 -6.47580 1.31720 1.33966 1.46433 1.79642 2.25449 2.28234 2.85555 2.94587 3.02783 3.59065 3.86533 3.94099 4.04141 4.12635 4.19780 4.20946 4.32461 4.38283 4.42591 4.46669 4.56899 4.63465 4.72799 4.78882 4.80722 4.97336 5.03655 5.05720 5.18432 5.26397 5.43078 5.56440 5.93744 6.11390 6.23695 6.30020 6.50747 6.53772 6.64283 6.90460 7.16126 7.48192 8.73788 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.042139 B = 0.003555 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.301030 B = 7874.211735 C = 8343.732802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.026 3.974 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.236 3.764 10 N -0.709 5.709 11 C 0.496 3.504 12 O -0.575 6.575 13 C 0.052 3.948 14 N -0.552 5.552 15 C 0.077 3.923 16 C -0.141 4.141 17 C 0.071 3.929 18 O -0.369 6.369 19 C 0.093 3.907 20 H 0.059 0.941 21 C 0.067 3.933 22 N -0.855 5.855 23 C 0.041 3.959 24 H 0.272 0.728 25 H 0.010 0.990 26 H 0.007 0.993 27 H 0.408 0.592 28 H 0.086 0.914 29 H 0.123 0.877 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.344 0.656 39 H 0.352 0.648 40 H 0.066 0.934 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.038 -16.872 2.827 26.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.174 4.174 3 Si 0.761 3.239 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.078 0.922 9 C 0.112 3.888 10 N -0.360 5.360 11 C 0.283 3.717 12 O -0.455 6.455 13 C -0.078 4.078 14 N -0.277 5.277 15 C -0.052 4.052 16 C -0.180 4.180 17 C -0.005 4.005 18 O -0.287 6.287 19 C 0.034 3.966 20 H 0.077 0.923 21 C -0.065 4.065 22 N -0.387 5.387 23 C -0.086 4.086 24 H 0.081 0.919 25 H 0.028 0.972 26 H 0.025 0.975 27 H 0.243 0.757 28 H 0.103 0.897 29 H 0.141 0.859 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.157 0.843 39 H 0.166 0.834 40 H 0.084 0.916 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 20.809 -15.051 2.001 25.760 hybrid contribution -1.356 -0.533 1.045 1.793 sum 19.452 -15.584 3.046 25.111 Atomic orbital electron populations 1.69979 1.07649 1.28592 1.50801 1.25593 0.95532 1.02635 0.93640 0.85860 0.79212 0.79434 0.79379 1.19159 1.19757 1.18590 1.21306 0.90008 0.94562 1.52455 0.92188 1.19020 0.93215 0.81250 0.95353 1.46025 1.06818 1.09518 1.73685 1.21301 0.81903 0.92726 0.75812 1.90639 1.56028 1.47791 1.50992 1.21906 0.88899 0.92028 1.04983 1.60034 1.05228 1.25851 1.36609 1.21593 0.97045 0.96989 0.89525 1.21081 0.95519 0.99269 1.02106 1.21615 0.96936 0.92171 0.89778 1.87838 1.73497 1.31059 1.36291 1.21924 0.89432 0.86821 0.98463 0.92330 1.21857 0.89434 0.94997 1.00168 1.58494 1.19383 1.49399 1.11397 1.23203 0.95421 0.87506 1.02495 0.91851 0.97186 0.97492 0.75683 0.89664 0.85922 0.93002 0.93027 0.93035 0.90631 0.89143 0.91859 0.92179 0.91075 0.84282 0.83374 0.91576 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.86 13.96 21.45 0.30 -55.56 16 2 C 0.03 1.50 5.47 84.65 0.46 1.96 16 3 Si 0.94 44.65 27.47 68.60 1.88 46.53 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.26 -12.40 6.54 99.48 0.65 -11.74 16 7 C -0.55 -30.25 9.83 25.60 0.25 -30.00 16 8 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 9 C 0.24 11.66 4.50 85.63 0.38 12.05 16 10 N -0.71 -28.17 5.55 -466.78 -2.59 -30.76 16 11 C 0.50 18.36 7.19 87.66 0.63 18.99 16 12 O -0.57 -25.99 14.89 -3.04 -0.05 -26.04 16 13 C 0.05 1.32 5.34 85.56 0.46 1.78 16 14 N -0.55 -14.31 3.90 -899.23 -3.51 -17.82 16 15 C 0.08 1.99 4.48 87.18 0.39 2.38 16 16 C -0.14 -3.72 5.62 28.87 0.16 -3.56 16 17 C 0.07 1.53 6.21 69.91 0.43 1.97 16 18 O -0.37 -9.08 10.03 -140.62 -1.41 -10.49 16 19 C 0.09 1.68 2.15 30.99 0.07 1.75 16 20 H 0.06 0.92 6.55 -2.39 -0.02 0.91 16 21 C 0.07 0.93 6.30 86.30 0.54 1.48 16 22 N -0.86 -11.03 9.55 -186.71 -1.78 -12.82 16 23 C 0.04 0.76 5.18 86.38 0.45 1.21 16 24 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 25 H 0.01 0.53 7.20 -2.39 -0.02 0.52 16 26 H 0.01 0.37 7.57 -2.39 -0.02 0.35 16 27 H 0.41 13.96 8.32 -92.71 -0.77 13.18 16 28 H 0.09 1.72 8.12 -2.38 -0.02 1.70 16 29 H 0.12 2.54 8.03 -2.39 -0.02 2.52 16 30 H 0.05 1.60 6.26 -2.39 -0.01 1.59 16 31 H 0.05 1.06 6.89 -2.39 -0.02 1.05 16 32 H 0.05 1.77 8.11 -2.38 -0.02 1.75 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 35 H 0.06 1.09 7.47 -2.39 -0.02 1.07 16 36 H 0.06 0.57 8.12 -2.39 -0.02 0.55 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.34 3.46 8.98 -89.69 -0.81 2.65 16 39 H 0.35 3.23 9.08 -89.70 -0.81 2.41 16 40 H 0.07 0.90 8.04 -2.38 -0.02 0.88 16 41 H 0.08 1.50 7.98 -2.39 -0.02 1.48 16 Total: -1.00 -72.46 325.63 -4.31 -76.77 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -1.39 Total: 20.18 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 4.23 Total: 9.99 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -7.58 Total: -116.95 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -1.46 Total: -36.52 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.53 kcal Total: -72.46 -4.31 -76.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313349133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.840 kcal (2) G-P(sol) polarization free energy of solvation -72.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds