Wall clock time and date at job start Mon Mar 30 2020 05:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34237 * 116.99797 * 2 1 4 4 O 1.20826 * 119.99909 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99757 * 179.97438 * 3 2 1 6 6 H 1.08992 * 109.46136 * 30.80461 * 5 3 2 7 7 C 1.53034 * 109.45096 * 270.83160 * 5 3 2 8 8 C 1.53120 * 109.27483 * 180.81050 * 7 5 3 9 9 C 1.53113 * 109.16046 * 57.65904 * 8 7 5 10 10 C 1.53041 * 109.27766 * 302.34248 * 9 8 7 11 11 N 1.46843 * 109.45897 * 150.78524 * 5 3 2 12 12 C 1.46902 * 111.00453 * 305.84301 * 11 5 3 13 13 C 1.52993 * 109.47296 * 162.53683 * 12 11 5 14 14 O 1.42899 * 109.47001 * 67.38341 * 13 12 11 15 15 C 1.42903 * 114.00033 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47202 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99904 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00049 * 180.02562 * 16 15 14 19 19 N 1.31524 * 119.99811 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00111 * 179.72482 * 18 16 15 21 21 H 1.48505 * 109.47024 * 180.27303 * 20 18 16 22 22 H 1.48494 * 109.47322 * 300.27137 * 20 18 16 23 23 H 1.48500 * 109.47165 * 60.27553 * 20 18 16 24 24 H 1.09001 * 109.47666 * 300.00214 * 1 2 3 25 25 H 1.09003 * 109.47126 * 60.00183 * 1 2 3 26 26 H 1.09005 * 109.47282 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.50594 * 300.75074 * 7 5 3 28 28 H 1.09001 * 109.50712 * 60.87050 * 7 5 3 29 29 H 1.09003 * 109.51994 * 177.56236 * 8 7 5 30 30 H 1.08995 * 109.52348 * 297.74835 * 8 7 5 31 31 H 1.09002 * 109.50947 * 62.28242 * 9 8 7 32 32 H 1.08998 * 109.50756 * 182.40458 * 9 8 7 33 33 H 1.09006 * 109.46213 * 299.16359 * 10 9 8 34 34 H 1.08999 * 109.46530 * 179.19891 * 10 9 8 35 35 H 1.09006 * 109.46711 * 42.53477 * 12 11 5 36 36 H 1.08998 * 109.46603 * 282.53868 * 12 11 5 37 37 H 1.08997 * 109.47490 * 307.38457 * 13 12 11 38 38 H 1.09006 * 109.47200 * 187.38081 * 13 12 11 39 39 H 1.08999 * 109.46879 * 60.00161 * 15 14 13 40 40 H 1.08996 * 109.47164 * 300.00451 * 15 14 13 41 41 H 0.96994 * 119.99992 * 359.73097 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9753 0.4124 -0.5254 7 6 4.0757 1.2810 1.4436 8 6 5.6036 1.3816 1.4399 9 6 6.0220 2.6483 0.6883 10 6 5.4561 2.6026 -0.7329 11 7 3.9918 2.5072 -0.6753 12 6 3.4049 2.6005 -2.0187 13 6 3.4971 4.0443 -2.5164 14 8 4.8675 4.3877 -2.7307 15 6 5.0657 5.7229 -3.1997 16 6 6.5392 5.9751 -3.3896 17 1 7.2530 5.1938 -3.1743 18 6 6.9762 7.2034 -3.8384 19 7 6.1069 8.1548 -4.1012 20 14 8.8032 7.5186 -4.0666 21 1 9.0095 8.9081 -4.5482 22 1 9.5029 7.3353 -2.7697 23 1 9.3497 6.5630 -5.0633 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.6561 2.1357 1.9742 28 1 3.7730 0.3592 1.9404 29 1 5.9680 1.4298 2.4661 30 1 6.0250 0.5075 0.9435 31 1 5.6329 3.5245 1.2069 32 1 7.1097 2.7034 0.6451 33 1 5.8564 1.7338 -1.2555 34 1 5.7402 3.5097 -1.2663 35 1 2.3591 2.2954 -1.9803 36 1 3.9495 1.9461 -2.6993 37 1 3.0671 4.7137 -1.7713 38 1 2.9474 4.1417 -3.4526 39 1 4.6682 6.4273 -2.4690 40 1 4.5486 5.8548 -4.1500 41 1 5.1582 7.9911 -3.9830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338882180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:32 Heat of formation + Delta-G solvation = -136.176101 kcal Electronic energy + Delta-G solvation = -21856.436210 eV Core-core repulsion = 18543.371440 eV Total energy + Delta-G solvation = -3313.064770 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.90456 -38.76712 -36.78728 -36.43028 -33.79079 -32.77963 -31.39852 -28.99465 -27.97791 -26.37335 -24.45444 -23.69411 -22.45203 -21.51259 -20.85199 -19.67087 -17.77568 -17.08527 -16.91602 -16.50491 -15.78984 -15.54426 -14.81728 -14.55250 -14.26328 -14.05395 -13.82267 -13.69487 -13.28561 -13.10408 -12.88072 -12.48314 -12.22244 -12.19006 -11.65150 -11.41839 -11.30022 -11.26060 -10.99731 -10.86696 -10.73310 -10.71473 -10.55565 -10.12521 -10.09388 -9.85221 -8.78518 -8.61415 -8.24226 -8.16405 -6.44673 -4.13543 2.08012 2.46072 3.43282 3.46008 3.64749 3.88898 4.44315 4.55570 4.66891 4.79768 4.86060 4.88390 4.96008 5.02809 5.15750 5.17578 5.30551 5.33320 5.42596 5.56551 5.62395 5.68867 5.82138 5.90189 5.95507 5.99318 6.04145 6.13568 6.19477 6.30002 6.48450 6.70366 6.84275 7.13358 7.20176 7.21083 7.69281 7.90438 8.19381 8.64011 8.81954 9.57292 10.95542 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026897 B = 0.004304 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.758692 B = 6504.490357 C = 7293.637469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.461 3.539 4 O -0.482 6.482 5 C 0.095 3.905 6 H 0.069 0.931 7 C -0.105 4.105 8 C -0.118 4.118 9 C -0.120 4.120 10 C 0.046 3.954 11 N -0.513 5.513 12 C 0.057 3.943 13 C 0.069 3.931 14 O -0.385 6.385 15 C 0.186 3.814 16 C -0.595 4.595 17 H 0.060 0.940 18 C 0.017 3.983 19 N -0.911 5.911 20 Si 1.078 2.922 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.286 1.286 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.029 0.971 34 H 0.129 0.871 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.041 0.959 39 H -0.003 1.003 40 H -0.007 1.007 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.968 -17.804 10.253 21.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.302 3.698 4 O -0.367 6.367 5 C -0.015 4.015 6 H 0.087 0.913 7 C -0.142 4.142 8 C -0.155 4.155 9 C -0.157 4.157 10 C -0.080 4.080 11 N -0.240 5.240 12 C -0.071 4.071 13 C -0.009 4.009 14 O -0.305 6.305 15 C 0.111 3.889 16 C -0.634 4.634 17 H 0.078 0.922 18 C -0.186 4.186 19 N -0.547 5.547 20 Si 0.905 3.095 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.213 1.213 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.147 0.853 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.014 0.986 40 H 0.011 0.989 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.131 -16.079 10.092 19.949 hybrid contribution -1.548 -1.663 -0.106 2.274 sum -7.678 -17.742 9.986 21.759 Atomic orbital electron populations 1.23249 0.76455 1.03539 1.02628 1.86518 1.23357 1.33808 1.84397 1.23755 0.91932 0.81365 0.72729 1.90692 1.66660 1.36105 1.43247 1.21279 0.86742 0.94570 0.98866 0.91287 1.21550 0.97083 1.02877 0.92733 1.21589 0.94120 0.98853 1.00953 1.21646 1.00439 0.97855 0.95806 1.22615 0.84000 1.04306 0.97056 1.61814 1.10750 1.32604 1.18839 1.22236 0.98991 0.97446 0.88398 1.22225 0.86188 0.94429 0.98072 1.87764 1.22061 1.33883 1.86750 1.20276 0.97895 0.78570 0.92131 1.21878 0.91038 1.01346 1.49101 0.92218 1.25916 1.07227 0.91901 0.93602 1.70793 1.03538 1.34685 1.45671 0.83417 0.73249 0.76169 0.76637 1.20677 1.21194 1.21287 0.91894 0.91893 0.88173 0.90266 0.90942 0.91315 0.92007 0.90882 0.91086 0.95239 0.85315 0.90569 0.93933 0.93116 0.94132 0.98575 0.98886 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.20 10.57 -39.28 -0.41 -4.61 16 3 C 0.46 6.33 5.78 36.01 0.21 6.54 16 4 O -0.48 -8.00 15.17 -18.75 -0.28 -8.29 16 5 C 0.10 1.25 2.34 -68.88 -0.16 1.09 16 6 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 7 C -0.10 -1.16 5.35 -26.65 -0.14 -1.30 16 8 C -0.12 -1.24 6.00 -26.61 -0.16 -1.40 16 9 C -0.12 -1.60 6.09 -26.65 -0.16 -1.77 16 10 C 0.05 0.75 5.18 -3.83 -0.02 0.73 16 11 N -0.51 -8.26 4.20 -228.08 -0.96 -9.21 16 12 C 0.06 0.95 5.15 -3.83 -0.02 0.93 16 13 C 0.07 1.36 6.23 37.15 0.23 1.59 16 14 O -0.38 -9.18 7.31 -35.23 -0.26 -9.44 16 15 C 0.19 5.09 5.00 36.00 0.18 5.27 16 16 C -0.60 -17.57 9.43 -34.44 -0.32 -17.89 16 17 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 18 C 0.02 0.49 5.46 -17.81 -0.10 0.40 16 19 N -0.91 -28.14 13.65 55.43 0.76 -27.38 16 20 Si 1.08 25.42 29.90 -169.99 -5.08 20.33 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 24 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 25 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.13 2.61 5.11 -51.93 -0.27 2.34 16 35 H 0.08 1.21 5.69 -51.93 -0.30 0.92 16 36 H 0.04 0.69 8.03 -51.93 -0.42 0.28 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.00 -0.10 8.01 -51.93 -0.42 -0.51 16 40 H -0.01 -0.18 8.00 -51.93 -0.42 -0.60 16 41 H 0.27 8.25 7.22 -40.82 -0.29 7.95 16 LS Contribution 330.42 15.07 4.98 4.98 Total: -1.00 -33.10 330.42 -7.47 -40.57 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -6.81 Total: -2.49 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 0.60 Total: -4.45 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: -0.20 Total: -36.60 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.96 Total: -22.34 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.33 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.10 -7.47 -40.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338882180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.609 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds