Wall clock time and date at job start Mon Mar 30 2020 05:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34237 * 116.99797 * 2 1 4 4 O 1.20826 * 119.99909 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99757 * 179.97438 * 3 2 1 6 6 H 1.08992 * 109.46136 * 30.80461 * 5 3 2 7 7 C 1.53034 * 109.45096 * 270.83160 * 5 3 2 8 8 C 1.53120 * 109.27483 * 180.81050 * 7 5 3 9 9 C 1.53113 * 109.16046 * 57.65904 * 8 7 5 10 10 C 1.53041 * 109.27766 * 302.34248 * 9 8 7 11 11 N 1.46843 * 109.45897 * 150.78524 * 5 3 2 12 12 C 1.46902 * 111.00453 * 305.84301 * 11 5 3 13 13 C 1.52993 * 109.47296 * 162.53683 * 12 11 5 14 14 O 1.42899 * 109.47001 * 67.38341 * 13 12 11 15 15 C 1.42903 * 114.00033 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47202 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99904 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00049 * 180.02562 * 16 15 14 19 19 N 1.31524 * 119.99811 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00111 * 179.72482 * 18 16 15 21 21 H 1.48505 * 109.47024 * 180.27303 * 20 18 16 22 22 H 1.48494 * 109.47322 * 300.27137 * 20 18 16 23 23 H 1.48500 * 109.47165 * 60.27553 * 20 18 16 24 24 H 1.09001 * 109.47666 * 300.00214 * 1 2 3 25 25 H 1.09003 * 109.47126 * 60.00183 * 1 2 3 26 26 H 1.09005 * 109.47282 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.50594 * 300.75074 * 7 5 3 28 28 H 1.09001 * 109.50712 * 60.87050 * 7 5 3 29 29 H 1.09003 * 109.51994 * 177.56236 * 8 7 5 30 30 H 1.08995 * 109.52348 * 297.74835 * 8 7 5 31 31 H 1.09002 * 109.50947 * 62.28242 * 9 8 7 32 32 H 1.08998 * 109.50756 * 182.40458 * 9 8 7 33 33 H 1.09006 * 109.46213 * 299.16359 * 10 9 8 34 34 H 1.08999 * 109.46530 * 179.19891 * 10 9 8 35 35 H 1.09006 * 109.46711 * 42.53477 * 12 11 5 36 36 H 1.08998 * 109.46603 * 282.53868 * 12 11 5 37 37 H 1.08997 * 109.47490 * 307.38457 * 13 12 11 38 38 H 1.09006 * 109.47200 * 187.38081 * 13 12 11 39 39 H 1.08999 * 109.46879 * 60.00161 * 15 14 13 40 40 H 1.08996 * 109.47164 * 300.00451 * 15 14 13 41 41 H 0.96994 * 119.99992 * 359.73097 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9753 0.4124 -0.5254 7 6 4.0757 1.2810 1.4436 8 6 5.6036 1.3816 1.4399 9 6 6.0220 2.6483 0.6883 10 6 5.4561 2.6026 -0.7329 11 7 3.9918 2.5072 -0.6753 12 6 3.4049 2.6005 -2.0187 13 6 3.4971 4.0443 -2.5164 14 8 4.8675 4.3877 -2.7307 15 6 5.0657 5.7229 -3.1997 16 6 6.5392 5.9751 -3.3896 17 1 7.2530 5.1938 -3.1743 18 6 6.9762 7.2034 -3.8384 19 7 6.1069 8.1548 -4.1012 20 14 8.8032 7.5186 -4.0666 21 1 9.0095 8.9081 -4.5482 22 1 9.5029 7.3353 -2.7697 23 1 9.3497 6.5630 -5.0633 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.6561 2.1357 1.9742 28 1 3.7730 0.3592 1.9404 29 1 5.9680 1.4298 2.4661 30 1 6.0250 0.5075 0.9435 31 1 5.6329 3.5245 1.2069 32 1 7.1097 2.7034 0.6451 33 1 5.8564 1.7338 -1.2555 34 1 5.7402 3.5097 -1.2663 35 1 2.3591 2.2954 -1.9803 36 1 3.9495 1.9461 -2.6993 37 1 3.0671 4.7137 -1.7713 38 1 2.9474 4.1417 -3.4526 39 1 4.6682 6.4273 -2.4690 40 1 4.5486 5.8548 -4.1500 41 1 5.1582 7.9911 -3.9830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338882180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:31 Heat of formation + Delta-G solvation = -158.056152 kcal Electronic energy + Delta-G solvation = -21857.385000 eV Core-core repulsion = 18543.371440 eV Total energy + Delta-G solvation = -3314.013560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.96571 -39.95101 -38.55291 -37.47703 -35.45957 -34.57330 -32.48413 -30.50916 -28.82956 -28.39945 -25.56985 -25.01913 -24.53381 -22.85430 -21.93419 -20.71704 -19.19268 -18.80781 -18.14266 -17.63383 -17.42714 -16.91548 -16.13894 -16.00852 -15.69130 -15.39306 -15.17632 -14.94157 -14.69511 -14.36952 -14.15650 -13.98488 -13.58308 -13.26288 -13.10042 -13.03021 -12.82044 -12.52204 -12.44316 -12.32497 -11.99586 -11.90376 -11.82661 -11.64813 -11.28191 -11.18200 -10.84482 -10.77550 -10.29972 -9.42954 -8.82367 -6.53499 1.02406 1.53244 1.53599 1.62870 1.83414 2.50057 2.70371 2.97208 3.04902 3.60916 3.73112 3.87943 3.89911 4.04692 4.14875 4.23686 4.28316 4.28784 4.29703 4.32793 4.45809 4.50385 4.55777 4.65784 4.67426 4.80706 4.88858 4.91493 4.95355 5.05672 5.16152 5.23791 5.38584 5.45746 5.66972 5.88591 5.92262 5.99457 6.33085 6.60580 6.67615 7.28120 8.58421 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026897 B = 0.004304 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.758692 B = 6504.490357 C = 7293.637469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.466 3.534 4 O -0.519 6.519 5 C 0.093 3.907 6 H 0.090 0.910 7 C -0.101 4.101 8 C -0.108 4.108 9 C -0.118 4.118 10 C 0.050 3.950 11 N -0.531 5.531 12 C 0.068 3.932 13 C 0.064 3.936 14 O -0.385 6.385 15 C 0.196 3.804 16 C -0.617 4.617 17 H 0.059 0.941 18 C -0.031 4.031 19 N -0.931 5.931 20 Si 1.129 2.871 21 H -0.279 1.279 22 H -0.265 1.265 23 H -0.266 1.266 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.136 0.864 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.039 0.961 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.036 0.964 38 H 0.048 0.952 39 H -0.024 1.024 40 H -0.021 1.021 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.016 -20.235 11.170 23.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.308 3.692 4 O -0.407 6.407 5 C -0.017 4.017 6 H 0.107 0.893 7 C -0.139 4.139 8 C -0.146 4.146 9 C -0.156 4.156 10 C -0.077 4.077 11 N -0.259 5.259 12 C -0.060 4.060 13 C -0.014 4.014 14 O -0.305 6.305 15 C 0.121 3.879 16 C -0.655 4.655 17 H 0.077 0.923 18 C -0.228 4.228 19 N -0.567 5.567 20 Si 0.947 3.053 21 H -0.204 1.204 22 H -0.190 1.190 23 H -0.190 1.190 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.154 0.846 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.066 0.934 39 H -0.006 1.006 40 H -0.003 1.003 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.211 -18.562 11.026 22.210 hybrid contribution -1.991 -0.984 -0.364 2.250 sum -7.202 -19.546 10.662 23.401 Atomic orbital electron populations 1.23572 0.74652 1.05874 1.02459 1.86506 1.25064 1.32333 1.83697 1.23863 0.92137 0.81439 0.71722 1.90685 1.67453 1.37410 1.45161 1.21430 0.86657 0.93592 0.99984 0.89283 1.21596 0.97375 1.03689 0.91238 1.21555 0.93635 0.97514 1.01866 1.21627 1.00688 0.99027 0.94240 1.22436 0.84376 1.02347 0.98504 1.61710 1.10666 1.35148 1.18333 1.22091 0.99819 0.94866 0.89237 1.22447 0.84205 0.96467 0.98239 1.87805 1.24567 1.31622 1.86481 1.19952 0.97053 0.80082 0.90862 1.22221 0.91917 1.01842 1.49475 0.92306 1.27642 1.11449 0.91468 0.92208 1.70925 1.03171 1.35481 1.47129 0.82818 0.67798 0.76577 0.78075 1.20416 1.19006 1.19048 0.91876 0.92363 0.84579 0.91880 0.87970 0.89135 0.90313 0.92741 0.90320 0.94274 0.89869 0.89534 0.93261 0.94563 0.93363 1.00619 1.00326 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.60 16 2 O -0.36 -7.44 10.57 -51.49 -0.54 -7.98 16 3 C 0.47 12.09 5.78 71.24 0.41 12.51 16 4 O -0.52 -17.08 15.17 21.96 0.33 -16.75 16 5 C 0.09 2.25 2.34 44.19 0.10 2.36 16 6 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 7 C -0.10 -1.99 5.35 30.65 0.16 -1.83 16 8 C -0.11 -1.96 6.00 30.67 0.18 -1.78 16 9 C -0.12 -3.05 6.09 30.65 0.19 -2.87 16 10 C 0.05 1.61 5.18 86.33 0.45 2.05 16 11 N -0.53 -16.94 4.20 -875.51 -3.68 -20.61 16 12 C 0.07 2.27 5.15 86.30 0.44 2.71 16 13 C 0.06 2.62 6.23 71.98 0.45 3.07 16 14 O -0.39 -19.08 7.31 -148.98 -1.09 -20.17 16 15 C 0.20 11.20 5.00 71.24 0.36 11.56 16 16 C -0.62 -37.18 9.43 25.60 0.24 -36.94 16 17 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 18 C -0.03 -1.80 5.46 84.65 0.46 -1.34 16 19 N -0.93 -58.59 13.65 21.45 0.29 -58.30 16 20 Si 1.13 50.44 29.90 68.60 2.05 52.49 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 24 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 25 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 26 H 0.14 1.01 8.14 -2.38 -0.02 1.00 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 33 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.08 3.49 5.11 -2.39 -0.01 3.48 16 35 H 0.09 2.73 5.69 -2.38 -0.01 2.71 16 36 H 0.05 1.58 8.03 -2.39 -0.02 1.56 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 39 H -0.02 -1.43 8.01 -2.39 -0.02 -1.45 16 40 H -0.02 -1.23 8.00 -2.39 -0.02 -1.25 16 41 H 0.25 16.26 7.22 -92.71 -0.67 15.59 16 Total: -1.00 -73.27 330.42 3.11 -70.16 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.09 Total: 10.06 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 4.65 Total: -8.90 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -3.38 Total: -78.91 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -1.30 Total: -44.90 kcal Atomic # 14 Polarization: 50.44 SS G_CDS: 2.05 Total: 52.49 kcal Total: -73.27 3.11 -70.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338882180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.894 kcal (2) G-P(sol) polarization free energy of solvation -73.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds