Wall clock time and date at job start Mon Mar 30 2020 05:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 117.00375 * 2 1 4 4 O 1.20825 * 120.00145 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00068 * 179.97438 * 3 2 1 6 6 H 1.08992 * 109.50274 * 300.07691 * 5 3 2 7 7 C 1.53116 * 109.53282 * 60.18140 * 5 3 2 8 8 C 1.53118 * 109.15746 * 177.61495 * 7 5 3 9 9 C 1.53034 * 109.27878 * 302.34048 * 8 7 5 10 10 N 1.46850 * 109.52473 * 59.18075 * 9 8 7 11 11 C 1.46899 * 111.00398 * 174.15932 * 10 9 8 12 12 C 1.52997 * 109.46965 * 199.93255 * 11 10 9 13 13 O 1.42901 * 109.47509 * 64.59024 * 12 11 10 14 14 C 1.42899 * 114.00218 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47134 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00164 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00099 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00066 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99574 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46819 * 90.00585 * 19 17 15 21 21 H 1.48502 * 109.46819 * 210.00062 * 19 17 15 22 22 H 1.48496 * 109.47467 * 330.00386 * 19 17 15 23 23 C 1.46847 * 111.19527 * 298.26297 * 10 9 8 24 24 H 1.09000 * 109.46512 * 299.99913 * 1 2 3 25 25 H 1.08998 * 109.46509 * 59.99943 * 1 2 3 26 26 H 1.08997 * 109.47170 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.52240 * 297.51281 * 7 5 3 28 28 H 1.08992 * 109.52717 * 57.71216 * 7 5 3 29 29 H 1.08993 * 109.50750 * 62.28286 * 8 7 5 30 30 H 1.08999 * 109.50349 * 182.36502 * 8 7 5 31 31 H 1.08994 * 109.46549 * 299.16433 * 9 8 7 32 32 H 1.09005 * 109.46656 * 179.19451 * 9 8 7 33 33 H 1.08997 * 109.47180 * 319.92860 * 11 10 9 34 34 H 1.08995 * 109.46762 * 79.93301 * 11 10 9 35 35 H 1.09004 * 109.46655 * 184.58668 * 12 11 10 36 36 H 1.09003 * 109.47443 * 304.58517 * 12 11 10 37 37 H 1.08999 * 109.46596 * 299.99654 * 14 13 12 38 38 H 1.09000 * 109.47158 * 59.98936 * 14 13 12 39 39 H 0.97004 * 120.00047 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.45804 * 181.75462 * 23 10 9 41 41 H 1.08995 * 109.45854 * 301.71657 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5665 1.2747 0.0006 6 1 3.9564 0.7797 0.8899 7 6 4.1157 0.5847 -1.2510 8 6 5.6406 0.7216 -1.2721 9 6 6.0153 2.2049 -1.2353 10 7 5.4675 2.8195 -0.0193 11 6 5.9233 4.2090 0.1196 12 6 5.7699 4.6529 1.5757 13 8 6.6379 3.8771 2.4043 14 6 6.5713 4.2134 3.7915 15 6 7.5217 3.3379 4.5669 16 1 8.1168 2.5983 4.0519 17 6 7.6316 3.4811 5.9338 18 7 8.4614 2.7174 6.6104 19 14 6.6029 4.7610 6.8244 20 1 5.3124 4.1560 7.2413 21 1 7.3364 5.2380 8.0243 22 1 6.3421 5.9063 5.9158 23 6 4.0012 2.7420 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.8451 -0.4711 -1.2334 28 1 3.6956 1.0546 -2.1402 29 1 6.0633 0.2179 -0.4028 30 1 6.0341 0.2687 -2.1821 31 1 5.6041 2.7052 -2.1120 32 1 7.1007 2.3055 -1.2357 33 1 6.9710 4.2787 -0.1730 34 1 5.3231 4.8540 -0.5221 35 1 6.0308 5.7076 1.6633 36 1 4.7375 4.5064 1.8934 37 1 6.8486 5.2590 3.9254 38 1 5.5556 4.0576 4.1548 39 1 8.5390 2.8185 7.5720 40 1 3.6237 3.2327 0.8976 41 1 3.5994 3.2399 -0.8820 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338957078.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:40 Heat of formation + Delta-G solvation = -133.146878 kcal Electronic energy + Delta-G solvation = -21398.302913 eV Core-core repulsion = 18085.369500 eV Total energy + Delta-G solvation = -3312.933413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.83693 -38.87893 -36.79916 -36.50413 -33.93285 -32.51185 -31.35077 -29.21903 -27.98955 -27.27446 -24.33480 -24.15475 -21.78510 -21.34500 -21.00488 -19.77487 -17.70389 -16.98543 -16.76010 -16.55400 -15.80570 -15.63411 -14.99484 -14.55372 -14.36853 -14.20727 -14.08553 -13.81670 -13.30688 -13.02987 -12.79964 -12.59348 -12.43381 -12.33161 -12.01495 -11.54357 -11.39723 -11.06416 -10.98263 -10.96383 -10.85136 -10.74429 -10.63949 -10.32886 -10.20845 -9.80185 -9.10105 -8.76033 -8.37742 -8.14277 -6.06118 -4.04085 2.06979 2.51109 3.28590 3.35275 3.37305 3.95290 4.40488 4.42359 4.58770 4.70914 4.73070 4.88729 4.96376 5.00691 5.08676 5.22540 5.25511 5.30760 5.40759 5.44189 5.49247 5.58085 5.65925 5.73595 5.86213 5.89166 5.92097 5.97346 6.08955 6.20412 6.21292 6.26938 6.68390 7.07346 7.15399 7.19962 7.60125 7.67051 8.12543 8.75598 9.07146 9.54127 11.07087 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.017605 B = 0.004401 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.061532 B = 6360.103159 C = 7042.585102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.469 3.531 4 O -0.509 6.509 5 C -0.079 4.079 6 H 0.124 0.876 7 C -0.109 4.109 8 C -0.116 4.116 9 C 0.054 3.946 10 N -0.524 5.524 11 C 0.064 3.936 12 C 0.063 3.937 13 O -0.364 6.364 14 C 0.168 3.832 15 C -0.514 4.514 16 H 0.083 0.917 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.875 3.125 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.267 1.267 23 C 0.073 3.927 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.028 0.972 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.040 0.960 36 H 0.037 0.963 37 H 0.000 1.000 38 H -0.004 1.004 39 H 0.265 0.735 40 H 0.085 0.915 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.772 -3.462 -18.066 22.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.312 3.688 4 O -0.396 6.396 5 C -0.098 4.098 6 H 0.142 0.858 7 C -0.146 4.146 8 C -0.154 4.154 9 C -0.074 4.074 10 N -0.248 5.248 11 C -0.064 4.064 12 C -0.015 4.015 13 O -0.283 6.283 14 C 0.092 3.908 15 C -0.552 4.552 16 H 0.101 0.899 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.701 3.299 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.192 1.192 23 C -0.055 4.055 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.017 0.983 38 H 0.014 0.986 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.624 -3.607 -17.548 21.916 hybrid contribution -1.327 1.401 0.146 1.935 sum -13.951 -2.206 -17.402 22.413 Atomic orbital electron populations 1.23260 0.76530 1.03629 1.02505 1.86519 1.23263 1.33512 1.84051 1.23840 0.92017 0.81223 0.71740 1.90660 1.67294 1.36381 1.45298 1.21105 0.86092 0.99564 1.03043 0.85796 1.21555 0.96761 1.00952 0.95367 1.21593 0.94408 0.96336 1.03036 1.22149 1.00416 0.94664 0.90151 1.61687 1.07399 1.18138 1.37602 1.22106 1.01039 0.87401 0.95826 1.22325 0.94341 0.94153 0.90718 1.87991 1.61713 1.59838 1.18761 1.20576 0.96048 0.95490 0.78679 1.20903 1.22860 1.19701 0.91701 0.89902 1.24759 0.95312 0.95902 0.96998 1.69878 1.36740 1.39223 1.07773 0.86872 0.80768 0.82507 0.79719 1.20006 1.20853 1.19155 1.21883 0.88217 0.93258 1.02119 0.91837 0.92055 0.88109 0.90343 0.91978 0.90009 0.90985 0.95352 0.90099 0.89781 0.93854 0.94149 0.94500 0.98283 0.98647 0.92465 0.89654 0.94348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.06 10.50 -39.25 -0.41 -4.47 16 3 C 0.47 6.08 7.26 36.01 0.26 6.34 16 4 O -0.51 -7.82 15.73 -18.75 -0.29 -8.11 16 5 C -0.08 -0.97 2.79 -91.69 -0.26 -1.22 16 6 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 7 C -0.11 -1.07 5.22 -26.61 -0.14 -1.21 16 8 C -0.12 -1.17 6.09 -26.65 -0.16 -1.33 16 9 C 0.05 0.63 5.43 -3.83 -0.02 0.61 16 10 N -0.52 -7.62 4.53 -234.68 -1.06 -8.68 16 11 C 0.06 0.93 5.39 -3.83 -0.02 0.91 16 12 C 0.06 1.13 6.13 37.16 0.23 1.36 16 13 O -0.36 -8.65 10.27 -35.23 -0.36 -9.01 16 14 C 0.17 4.37 4.76 36.00 0.17 4.54 16 15 C -0.51 -15.55 9.99 -34.44 -0.34 -15.89 16 16 H 0.08 2.74 8.06 -52.49 -0.42 2.32 16 17 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 19 Si 0.87 21.83 27.47 -169.99 -4.67 17.16 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 23 C 0.07 1.01 3.86 -3.83 -0.01 0.99 16 24 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 25 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.94 7.93 -51.93 -0.41 0.53 16 33 H 0.08 1.20 7.79 -51.93 -0.40 0.79 16 34 H 0.04 0.53 8.00 -51.93 -0.42 0.12 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.04 0.65 6.71 -51.93 -0.35 0.31 16 37 H 0.00 -0.01 7.20 -51.93 -0.37 -0.39 16 38 H 0.00 -0.11 7.57 -51.93 -0.39 -0.50 16 39 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 40 H 0.09 1.31 6.62 -51.93 -0.34 0.97 16 41 H 0.04 0.51 8.08 -51.93 -0.42 0.09 16 LS Contribution 333.82 15.07 5.03 5.03 Total: -1.00 -34.14 333.82 -7.25 -41.39 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -6.93 Total: -4.52 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 0.67 Total: -1.52 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.29 Total: -35.95 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -1.07 Total: -21.59 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.14 -7.25 -41.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338957078.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.758 kcal (2) G-P(sol) polarization free energy of solvation -34.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds