Wall clock time and date at job start Mon Mar 30 2020 05:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 117.00375 * 2 1 4 4 O 1.20825 * 120.00145 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00068 * 179.97438 * 3 2 1 6 6 H 1.08992 * 109.50274 * 300.07691 * 5 3 2 7 7 C 1.53116 * 109.53282 * 60.18140 * 5 3 2 8 8 C 1.53118 * 109.15746 * 177.61495 * 7 5 3 9 9 C 1.53034 * 109.27878 * 302.34048 * 8 7 5 10 10 N 1.46850 * 109.52473 * 59.18075 * 9 8 7 11 11 C 1.46899 * 111.00398 * 174.15932 * 10 9 8 12 12 C 1.52997 * 109.46965 * 199.93255 * 11 10 9 13 13 O 1.42901 * 109.47509 * 64.59024 * 12 11 10 14 14 C 1.42899 * 114.00218 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47134 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00164 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00099 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00066 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99574 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46819 * 90.00585 * 19 17 15 21 21 H 1.48502 * 109.46819 * 210.00062 * 19 17 15 22 22 H 1.48496 * 109.47467 * 330.00386 * 19 17 15 23 23 C 1.46847 * 111.19527 * 298.26297 * 10 9 8 24 24 H 1.09000 * 109.46512 * 299.99913 * 1 2 3 25 25 H 1.08998 * 109.46509 * 59.99943 * 1 2 3 26 26 H 1.08997 * 109.47170 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.52240 * 297.51281 * 7 5 3 28 28 H 1.08992 * 109.52717 * 57.71216 * 7 5 3 29 29 H 1.08993 * 109.50750 * 62.28286 * 8 7 5 30 30 H 1.08999 * 109.50349 * 182.36502 * 8 7 5 31 31 H 1.08994 * 109.46549 * 299.16433 * 9 8 7 32 32 H 1.09005 * 109.46656 * 179.19451 * 9 8 7 33 33 H 1.08997 * 109.47180 * 319.92860 * 11 10 9 34 34 H 1.08995 * 109.46762 * 79.93301 * 11 10 9 35 35 H 1.09004 * 109.46655 * 184.58668 * 12 11 10 36 36 H 1.09003 * 109.47443 * 304.58517 * 12 11 10 37 37 H 1.08999 * 109.46596 * 299.99654 * 14 13 12 38 38 H 1.09000 * 109.47158 * 59.98936 * 14 13 12 39 39 H 0.97004 * 120.00047 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.45804 * 181.75462 * 23 10 9 41 41 H 1.08995 * 109.45854 * 301.71657 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5665 1.2747 0.0006 6 1 3.9564 0.7797 0.8899 7 6 4.1157 0.5847 -1.2510 8 6 5.6406 0.7216 -1.2721 9 6 6.0153 2.2049 -1.2353 10 7 5.4675 2.8195 -0.0193 11 6 5.9233 4.2090 0.1196 12 6 5.7699 4.6529 1.5757 13 8 6.6379 3.8771 2.4043 14 6 6.5713 4.2134 3.7915 15 6 7.5217 3.3379 4.5669 16 1 8.1168 2.5983 4.0519 17 6 7.6316 3.4811 5.9338 18 7 8.4614 2.7174 6.6104 19 14 6.6029 4.7610 6.8244 20 1 5.3124 4.1560 7.2413 21 1 7.3364 5.2380 8.0243 22 1 6.3421 5.9063 5.9158 23 6 4.0012 2.7420 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.8451 -0.4711 -1.2334 28 1 3.6956 1.0546 -2.1402 29 1 6.0633 0.2179 -0.4028 30 1 6.0341 0.2687 -2.1821 31 1 5.6041 2.7052 -2.1120 32 1 7.1007 2.3055 -1.2357 33 1 6.9710 4.2787 -0.1730 34 1 5.3231 4.8540 -0.5221 35 1 6.0308 5.7076 1.6633 36 1 4.7375 4.5064 1.8934 37 1 6.8486 5.2590 3.9254 38 1 5.5556 4.0576 4.1548 39 1 8.5390 2.8185 7.5720 40 1 3.6237 3.2327 0.8976 41 1 3.5994 3.2399 -0.8820 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338957078.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:39 Heat of formation + Delta-G solvation = -157.231604 kcal Electronic energy + Delta-G solvation = -21399.347305 eV Core-core repulsion = 18085.369500 eV Total energy + Delta-G solvation = -3313.977805 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.81885 -39.92436 -38.40955 -37.54750 -35.20660 -34.59550 -32.31046 -30.83013 -29.14845 -28.66680 -25.32533 -25.18974 -23.93372 -22.45889 -22.05201 -20.72154 -19.04446 -18.65890 -17.94794 -17.49398 -17.40628 -16.91924 -16.44995 -16.02622 -15.79652 -15.33665 -15.11708 -14.87231 -14.65382 -14.31905 -14.14999 -13.86960 -13.73709 -13.39062 -13.10179 -13.07277 -12.73764 -12.51635 -12.43070 -12.18471 -11.97792 -11.83788 -11.82198 -11.69963 -11.40612 -11.29484 -11.19254 -10.90870 -10.27778 -9.19373 -8.35848 -6.42723 1.06510 1.32741 1.35368 1.46327 1.63125 2.29769 2.92960 2.96681 3.15652 3.48898 3.70645 3.80744 4.11481 4.13777 4.23037 4.27845 4.29201 4.30448 4.32015 4.47288 4.54263 4.59999 4.62112 4.68116 4.72273 4.76541 4.83933 4.92729 4.94133 5.02397 5.08770 5.19117 5.29651 5.41331 5.46497 5.94974 6.11244 6.19822 6.61430 6.63209 6.82278 7.21871 8.81382 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.017605 B = 0.004401 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.061532 B = 6360.103159 C = 7042.585102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.473 3.527 4 O -0.537 6.537 5 C -0.079 4.079 6 H 0.111 0.889 7 C -0.100 4.100 8 C -0.112 4.112 9 C 0.052 3.948 10 N -0.550 5.550 11 C 0.068 3.932 12 C 0.054 3.946 13 O -0.389 6.389 14 C 0.179 3.821 15 C -0.541 4.541 16 H 0.031 0.969 17 C 0.015 3.985 18 N -0.942 5.942 19 Si 0.952 3.048 20 H -0.262 1.262 21 H -0.271 1.271 22 H -0.247 1.247 23 C 0.079 3.921 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.133 0.867 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.038 0.962 37 H 0.010 0.990 38 H 0.002 0.998 39 H 0.273 0.727 40 H 0.061 0.939 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.399 -2.649 -19.132 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.317 3.683 4 O -0.427 6.427 5 C -0.099 4.099 6 H 0.129 0.871 7 C -0.138 4.138 8 C -0.150 4.150 9 C -0.075 4.075 10 N -0.276 5.276 11 C -0.059 4.059 12 C -0.024 4.024 13 O -0.308 6.308 14 C 0.103 3.897 15 C -0.578 4.578 16 H 0.050 0.950 17 C -0.183 4.183 18 N -0.582 5.582 19 Si 0.774 3.226 20 H -0.187 1.187 21 H -0.196 1.196 22 H -0.171 1.171 23 C -0.049 4.049 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.151 0.849 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.027 0.973 38 H 0.020 0.980 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.252 -2.815 -18.646 23.637 hybrid contribution -0.803 1.043 0.416 1.380 sum -15.055 -1.773 -18.230 23.709 Atomic orbital electron populations 1.23572 0.74751 1.05806 1.02491 1.86507 1.25019 1.32493 1.83501 1.23904 0.92159 0.81267 0.70951 1.90643 1.67908 1.37329 1.46832 1.21092 0.85981 0.98912 1.03874 0.87135 1.21543 0.96370 1.01550 0.94330 1.21591 0.94564 0.95324 1.03524 1.22229 1.00206 0.95503 0.89558 1.61647 1.07896 1.18311 1.39712 1.22068 1.01780 0.88273 0.93798 1.22683 0.93369 0.94581 0.91730 1.87946 1.63437 1.61455 1.17994 1.20274 0.94906 0.94696 0.79822 1.21152 1.23870 1.19991 0.92826 0.95020 1.25789 0.96503 0.98361 0.97652 1.70028 1.38396 1.41165 1.08574 0.85653 0.78905 0.79535 0.78520 1.18704 1.19610 1.17081 1.21768 0.87863 0.94051 1.01219 0.92402 0.91579 0.84881 0.88987 0.90813 0.91916 0.88251 0.93525 0.90426 0.89636 0.90924 0.92486 0.94396 0.97272 0.98006 0.91833 0.92005 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.60 16 2 O -0.36 -7.72 10.50 -51.38 -0.54 -8.26 16 3 C 0.47 11.97 7.26 71.24 0.52 12.49 16 4 O -0.54 -16.31 15.73 21.97 0.35 -15.96 16 5 C -0.08 -1.91 2.79 -11.49 -0.03 -1.94 16 6 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 7 C -0.10 -1.80 5.22 30.67 0.16 -1.64 16 8 C -0.11 -2.09 6.09 30.65 0.19 -1.90 16 9 C 0.05 1.13 5.43 86.32 0.47 1.60 16 10 N -0.55 -15.66 4.53 -896.39 -4.06 -19.72 16 11 C 0.07 1.90 5.39 86.30 0.47 2.37 16 12 C 0.05 1.89 6.13 71.98 0.44 2.33 16 13 O -0.39 -18.68 10.27 -148.98 -1.53 -20.20 16 14 C 0.18 9.33 4.76 71.23 0.34 9.67 16 15 C -0.54 -33.77 9.99 25.60 0.26 -33.51 16 16 H 0.03 2.22 8.06 -2.91 -0.02 2.20 16 17 C 0.01 0.89 5.47 84.66 0.46 1.36 16 18 N -0.94 -60.17 13.96 21.45 0.30 -59.87 16 19 Si 0.95 44.51 27.47 68.60 1.88 46.39 16 20 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 23 C 0.08 2.13 3.86 86.33 0.33 2.46 16 24 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 25 H 0.07 0.95 8.13 -2.39 -0.02 0.93 16 26 H 0.13 1.11 8.14 -2.39 -0.02 1.10 16 27 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 30 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 1.72 7.93 -2.38 -0.02 1.70 16 33 H 0.09 2.34 7.79 -2.39 -0.02 2.32 16 34 H 0.07 1.61 8.00 -2.39 -0.02 1.59 16 35 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.04 1.32 6.71 -2.39 -0.02 1.31 16 37 H 0.01 0.48 7.20 -2.39 -0.02 0.46 16 38 H 0.00 0.11 7.57 -2.39 -0.02 0.10 16 39 H 0.27 15.95 8.31 -92.70 -0.77 15.18 16 40 H 0.06 1.92 6.62 -2.39 -0.02 1.91 16 41 H 0.05 1.14 8.08 -2.39 -0.02 1.13 16 Total: -1.00 -75.68 333.82 2.13 -73.55 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 0.93 Total: 9.18 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 4.79 Total: -5.11 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -3.76 Total: -79.59 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -1.72 Total: -44.42 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.39 kcal Total: -75.68 2.13 -73.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338957078.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.679 kcal (2) G-P(sol) polarization free energy of solvation -75.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds